View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18804_low_16 (Length: 327)
Name: NF18804_low_16
Description: NF18804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18804_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 20 - 315
Target Start/End: Complemental strand, 33029811 - 33029518
Alignment:
| Q |
20 |
ctgctcttgtttctcatgtgtttaatcacagtcctgtatgtataaaaatagtattgacatttatgaaatataaaactttaccgataagacaacctctata |
119 |
Q |
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| T |
33029811 |
ctgctcttgtttctcatgtgtttaatcacagtcctgtatgtataaa--tagtattgacatttatgaaatataaaactttaccgataacacaacctctata |
33029714 |
T |
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| Q |
120 |
gtatattttaacattgaaaatcgaaatccaaaacttgaaaccaaattatggttattatttaaaatacatatttatgaaatatgtataatatttaaaaata |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33029713 |
gtatattttaacattgaaaatcgaaatccaaaacttgaaaccaaattatggttattatttaaaatacatatttatgaaatatgtataatatttaaaaata |
33029614 |
T |
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| Q |
220 |
ctatcaagttatcacataatcatagctaatttctaaaaagtcccaacagtcaaactaaaatgtgtaagacaatatgtatggttatttcagtagtat |
315 |
Q |
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| T |
33029613 |
ctatcaagttatcacataatcatagctaatttctaaaaagtcataagagtcaaactaaaatgtgtaagacaatatgtatggttatttcagtagtat |
33029518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 225 - 296
Target Start/End: Complemental strand, 33041036 - 33040965
Alignment:
| Q |
225 |
aagttatcacataatcatagctaatttctaaaaagtcccaacagtcaaactaaaatgtgtaagacaatatgt |
296 |
Q |
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| T |
33041036 |
aagttatcacataattattgctaatttctgaaaagtcataagtgtcaaactaaaatgtgcaagacaatatgt |
33040965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 199 - 291
Target Start/End: Original strand, 811097 - 811188
Alignment:
| Q |
199 |
tatgtataatatttaaaaatactatcaagttatcacataatcatagctaatttctaaaaagtcccaacagtcaaactaaaatgtgtaagacaa |
291 |
Q |
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|||||| ||| |||||||||||||||||| || | || |||||||||| |||||| |||| || | | ||||||||||||||||| ||||||| |
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| T |
811097 |
tatgtacaatttttaaaaatactatcaagctaccccagaatcatagct-atttctgaaaactcactagagtcaaactaaaatgtgcaagacaa |
811188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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