View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18804_low_17 (Length: 310)
Name: NF18804_low_17
Description: NF18804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18804_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 16 - 294
Target Start/End: Complemental strand, 45281993 - 45281715
Alignment:
| Q |
16 |
atcacaacacatgttactatgcagagtatgccaacactggacctggtgccaatgttgctaggagggtcaagtggaggggttatcacggtgtcattagcag |
115 |
Q |
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| T |
45281993 |
atcacaacacatgttactatgcagagtatgcaaacaccggacctggtgccaatgttgcgaggagggtcaagtggaagggttatcacggtgtcattagcag |
45281894 |
T |
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| Q |
116 |
ggccgaggctaacaaattcacagctggtatatggctccaagctggacccaagtctgcagctgaatggttgaatggtcttcatgttcctcactaccttggc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45281893 |
ggccgaggctaacaaattcacagctggtatatggctccaagctggacccaagtctgcagctgaatggttgaatggtcttcatgttcctcactaccttggc |
45281794 |
T |
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| Q |
216 |
ttcaaagcttgaaaattaaacatgtaacactcagcgagtgtgaatgtgatgcatggctcgaagacaaattgttattctt |
294 |
Q |
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| T |
45281793 |
ttcaaagcttgaaaattaaacatgtaacactcagcgagtgtgaatgtgatgcatgggtcggagacaaattgttattctt |
45281715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 45273749 - 45273529
Alignment:
| Q |
16 |
atcacaacacatgttactatgcagagtatgccaacactggacctggtgccaatgttgctaggagggtcaagtggaggggttatcacggtgtcattagcag |
115 |
Q |
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||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
45273749 |
atcacaacacatgttactatgcagagtatgcaaacaccggacctggtgccaatgttgcgaggagggtcaagtggaagggttatcacggtgtcattagcag |
45273650 |
T |
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| Q |
116 |
ggccgaggctaacaaattcacagctggtatatggctccaagctggacccaagtctgcagctgaatggttgaatggtcttcatgttcctcactaccttggc |
215 |
Q |
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| T |
45273649 |
ggccgaggctaacaaattcacagctggtatatggctccaagctggacccaagtctgcagctgaatggttgaatggtcttcatgttcctcactaccttggc |
45273550 |
T |
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| Q |
216 |
ttcaaagcttgaaaattaaac |
236 |
Q |
| |
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||||||||||||||||||||| |
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| T |
45273549 |
ttcaaagcttgaaaattaaac |
45273529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 21 - 294
Target Start/End: Complemental strand, 45293328 - 45293055
Alignment:
| Q |
21 |
aacacatgttactatgcagagtatgccaacactggacctggtgccaatgttgctaggagggtcaagtggaggggttatcacggtgtcattagcagggccg |
120 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||| ||||||||| |||||||||||||| |||||||||||||| |
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| T |
45293328 |
aacacatgttactatgcagagtacgccaacactggacctggtgccaatattgccaggaggatcaagtggaagggttatcacggtgccattagcagggccg |
45293229 |
T |
|
| Q |
121 |
aggctaacaaattcacagctggtatatggctccaagctggacccaagtctgcagctgaatggttgaatggtcttcatgttcctcactaccttggcttcaa |
220 |
Q |
| |
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|||||| ||||||||| |||||| ||||||||||||||||||||||||| ||||| |||||||||| ||||||| |||||||| | |||||||||||||| |
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| T |
45293228 |
aggctaccaaattcactgctggtttatggctccaagctggacccaagtccgcagccgaatggttgactggtcttaatgttcctaattaccttggcttcaa |
45293129 |
T |
|
| Q |
221 |
agcttgaaaattaaacatgtaacactcagcgagtgtgaatgtgatgcatggctcgaagacaaattgttattctt |
294 |
Q |
| |
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||||||||||||||||||||||| || || |||||||||||||||||||||| | | ||||||| |||||||| |
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| T |
45293128 |
agcttgaaaattaaacatgtaactctgagagagtgtgaatgtgatgcatggcacataaacaaattattattctt |
45293055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 21 - 294
Target Start/End: Complemental strand, 45302288 - 45302015
Alignment:
| Q |
21 |
aacacatgttactatgcagagtatgccaacactggacctggtgccaatgttgctaggagggtcaagtggaggggttatcacggtgtcattagcagggccg |
120 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||| ||||||||| |||||||||||||| |||||||||||||| |
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| T |
45302288 |
aacacatgttactatgcagagtacgccaacactggacctggtgccaatattgccaggaggatcaagtggaagggttatcacggtgccattagcagggccg |
45302189 |
T |
|
| Q |
121 |
aggctaacaaattcacagctggtatatggctccaagctggacccaagtctgcagctgaatggttgaatggtcttcatgttcctcactaccttggcttcaa |
220 |
Q |
| |
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|||||| ||||||||| |||||| ||||||||||||||||||||||||| ||||| |||||||||| ||||||| |||||||| | |||||||||||||| |
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| T |
45302188 |
aggctaccaaattcactgctggtttatggctccaagctggacccaagtccgcagccgaatggttgactggtcttaatgttcctaattaccttggcttcaa |
45302089 |
T |
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| Q |
221 |
agcttgaaaattaaacatgtaacactcagcgagtgtgaatgtgatgcatggctcgaagacaaattgttattctt |
294 |
Q |
| |
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||||||||||||||||||||||| || || |||||||||||||||||||||| | | ||||||| |||||||| |
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| T |
45302088 |
agcttgaaaattaaacatgtaactctgagagagtgtgaatgtgatgcatggcacataaacaaattattattctt |
45302015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 21 - 236
Target Start/End: Complemental strand, 45270194 - 45269967
Alignment:
| Q |
21 |
aacacatgttactatgcagagtatgccaacactggacctggtgccaatgttgctaggagggtcaagtggaggggttatcacggtgtcattagcagggccg |
120 |
Q |
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||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| | ||||||||||||||| || |
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| T |
45270194 |
aacacgtgttactttgcagagtatgccaacactggacctggtgccaatgttgcgaggagggtcaagtggaagggttataagggtgtcattagcaggagcg |
45270095 |
T |
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| Q |
121 |
aggctaacaaattcacagctggtatatggctccaagctgg------------acccaagtctgcagctgaatggttgaatggtcttcatgttcctcacta |
208 |
Q |
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|||||| ||||| ||| || ||||||||||| | ||||| |||||||||||||| |||||||||| | | |||||||||||||||||| |
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| T |
45270094 |
aggctaccaaatacaccgccagtatatggctcgatgctggaccgaagactgcacccaagtctgcagttgaatggttgcacgatcttcatgttcctcacta |
45269995 |
T |
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| Q |
209 |
ccttggcttcaaagcttgaaaattaaac |
236 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
45269994 |
ccttggcttcaaagcttgaaaattaaac |
45269967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 238 - 294
Target Start/End: Complemental strand, 45273433 - 45273377
Alignment:
| Q |
238 |
tgtaacactcagcgagtgtgaatgtgatgcatggctcgaagacaaattgttattctt |
294 |
Q |
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|||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
45273433 |
tgtaactctcagagagtgtgaatgtgatgcatggctcggagacaaattgttattctt |
45273377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 251 - 294
Target Start/End: Complemental strand, 45269872 - 45269829
Alignment:
| Q |
251 |
gagtgtgaatgtgatgcatggctcgaagacaaattgttattctt |
294 |
Q |
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| T |
45269872 |
gagtgtgaatgtgatgcatggctcggagacaaattgttattctt |
45269829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 294
Target Start/End: Complemental strand, 45279096 - 45279049
Alignment:
| Q |
247 |
cagcgagtgtgaatgtgatgcatggctcgaagacaaattgttattctt |
294 |
Q |
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||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
45279096 |
cagcgtgtgtgaatgtgatgcatggctcggagacaaattgttattctt |
45279049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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