View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18804_low_18 (Length: 305)
Name: NF18804_low_18
Description: NF18804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18804_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 42974556 - 42974288
Alignment:
| Q |
19 |
tccacacatcacaaggtaacgtaaacaaatttctctccctaccacacgcaaactgcacaaccctaaccctacacgtgaacgacggatacaaaaccacacc |
118 |
Q |
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| T |
42974556 |
tccacacatcacaaggtaacgtaaacaaatttctctcccttccacacgcaaactgcacaaccctaaccctacacgtgaacgacggatacaaaaccacacc |
42974457 |
T |
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| Q |
119 |
atttattttcatcaccaacgctataactccatcacccatcatctccctgtaagcaccgtttgtccacgtcactctcccgtaaccgtccgatataaatcct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
42974456 |
atttattttcatcaccaacgctataactccatcacccatcatctccctgtaagcaccgtttgtccacgtcactctcccgtaaccgtccgatataaaccct |
42974357 |
T |
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| Q |
219 |
ggacacgtgtccaccatcagctttgcacttctctcttcatctgtattccctagtccctcaccctctacc |
287 |
Q |
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| T |
42974356 |
ggacacgtgtccaccatcagctttgcacttctctcttcatctgtattccctagtccctcaccctctacc |
42974288 |
T |
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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 34059256 - 34059207
Alignment:
| Q |
181 |
tccacgtcactctcccgtaaccgtccgatataaatcctggacacgtgtcc |
230 |
Q |
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| T |
34059256 |
tccacgtcactctcccataaccgtccgatataaatccaggacacgcgtcc |
34059207 |
T |
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