View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18804_low_19 (Length: 303)
Name: NF18804_low_19
Description: NF18804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18804_low_19 |
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| [»] scaffold0006 (1 HSPs) |
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| [»] scaffold0182 (1 HSPs) |
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Alignment Details
Target: scaffold0006 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 17 - 294
Target Start/End: Original strand, 276347 - 276624
Alignment:
| Q |
17 |
tctttcaatgtagttttcttgcctacatatttgtcnnnnnnngagttgatgctctctgatctttgagttgttgacatgccaccgaaaaaggtatctttca |
116 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
276347 |
tctttcaatgtagttttcttgcctacatatttgtcaaaaaaagagttgatgctctctgatctttgagttgttgacatgccaccgaaaaaggtatctttca |
276446 |
T |
|
| Q |
117 |
tgtaaacaggaacccaatgtttacgttcttcatataaagactgaatccacccatcctctgagtttgatagttgaaatttctctaccatttctgcccaatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
276447 |
tgtaaacaggaacccaatgtttacgttcttcatataaagactgaatccacccatcctctgagtttgatagttgaaatttctctaccatttctgcccaatt |
276546 |
T |
|
| Q |
217 |
aacttcaaactgttgtattgacagagacttgtatatacatgcgtcaaaatatcccatgaaatcttcattatttcttat |
294 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
276547 |
aacttcaaactgttgtattgacagagacttgtatatgcatgcatcaaaatatcccatgaaatcttcattatttcttat |
276624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 17 - 294
Target Start/End: Original strand, 26396952 - 26397229
Alignment:
| Q |
17 |
tctttcaatgtagttttcttgcctacatatttgtcnnnnnnngagttgatgctctctgatctttgagttgttgacatgccaccgaaaaaggtatctttca |
116 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26396952 |
tctttcaatgtagttttcttgcctacatatttgtcaaaaaaagagttgatgctctctgatctttgagttgttgacatgccaccgaaaaaggtatctttca |
26397051 |
T |
|
| Q |
117 |
tgtaaacaggaacccaatgtttacgttcttcatataaagactgaatccacccatcctctgagtttgatagttgaaatttctctaccatttctgcccaatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26397052 |
tgtaaacaggaacccaatgtttacgttcttcatataaagactgaatccacccatcctctgagtttgatagttgaaatttctctaccatttctgcccaatt |
26397151 |
T |
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| Q |
217 |
aacttcaaactgttgtattgacagagacttgtatatacatgcgtcaaaatatcccatgaaatcttcattatttcttat |
294 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
26397152 |
aacttcaaactgttgtattgacagagacttgtatatgcatgcatcaaaatatcccatgaaatcttcattatttcttat |
26397229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 17 - 294
Target Start/End: Original strand, 29237 - 29514
Alignment:
| Q |
17 |
tctttcaatgtagttttcttgcctacatatttgtcnnnnnnngagttgatgctctctgatctttgagttgttgacatgccaccgaaaaaggtatctttca |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
29237 |
tctttcaatgtagttttcttgcctacatatttgtcaaaaaaagagttgatgctctctaatctttgagttgttgacatgccagcgaaaaaggtatctttca |
29336 |
T |
|
| Q |
117 |
tgtaaacaggaacccaatgtttacgttcttcatataaagactgaatccacccatcctctgagtttgatagttgaaatttctctaccatttctgcccaatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29337 |
tgtaaacaggaacccaatgtttacgttcttcatataaagactgaatccacccatcctctgagtttgatagttgaaatttctctaccatttctgcccaatt |
29436 |
T |
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| Q |
217 |
aacttcaaactgttgtattgacagagacttgtatatacatgcgtcaaaatatcccatgaaatcttcattatttcttat |
294 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
29437 |
aacttcaaactgttgtattgacagagacttgtatatgcatgcgtcaaaatatcccatgaaatcttcattatttcttat |
29514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 59 - 285
Target Start/End: Original strand, 20645735 - 20645955
Alignment:
| Q |
59 |
gagttgatgctctctgatctttgagttgttgacatgccaccgaaaaaggtatctttcatgtaaacaggaacccaatgtttacgttcttcatataaagact |
158 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||| ||||||| ||||||||||||||| |||| |
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| T |
20645735 |
gagttgatgctctctgatctttgagttgttgacataccaccaaaaaatgtatctttcatgtaaacaggaattcaatgttcacgttcttcatataacgact |
20645834 |
T |
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| Q |
159 |
gaatccacccatcctctgagtttgatagttgaaatttctctaccatttctgcccaattaacttcaaactgttgtattgacagagacttgtatatacatgc |
258 |
Q |
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| T |
20645835 |
gaatccatacatcctc------agacagctgaaatttttctaccatttcttctcatttatcttgaaactgttgtattgaacgggacttgtaaatgcatga |
20645928 |
T |
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| Q |
259 |
gtcaaaatatcccatgaaatcttcatt |
285 |
Q |
| |
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|| |||||||||||||||||| ||||| |
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| T |
20645929 |
gttaaaatatcccatgaaatcatcatt |
20645955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 23 - 165
Target Start/End: Complemental strand, 56109081 - 56108939
Alignment:
| Q |
23 |
aatgtagttttcttgcctacatatttgtcnnnnnnngagttgatgctctctgatctttgagttgttgacatgccaccgaaaaaggtatctttcatgtaaa |
122 |
Q |
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|||||||||||||| | |||||||||||| || || |||||||||||||||||||||||||||| |||||| ||||| ||||| |||||||||| |
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| T |
56109081 |
aatgtagttttcttacatacatatttgtcaaaaaaagaattaatgctctctgatctttgagttgttgacaagccaccaaaaaatgtatcattcatgtaaa |
56108982 |
T |
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| Q |
123 |
caggaacccaatgtttacgttcttcatataaagactgaatcca |
165 |
Q |
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||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
56108981 |
caggaacccaatgttcacgttcttcatataaagagtgaatcca |
56108939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 23 - 162
Target Start/End: Complemental strand, 26014848 - 26014709
Alignment:
| Q |
23 |
aatgtagttttcttgcctacatatttgtcnnnnnnngagttgatgctctctgatctttgagttgttgacatgccaccgaaaaaggtatctttcatgtaaa |
122 |
Q |
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||||| |||||||| | |||||||||||| || || |||||||||||||||||||||||||||| |||||| ||||| ||||| |||||||||| |
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| T |
26014848 |
aatgttgttttcttacatacatatttgtcaaaaaaagaattaatgctctctgatctttgagttgttgacaagccaccaaaaaatgtatcattcatgtaaa |
26014749 |
T |
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| Q |
123 |
caggaacccaatgtttacgttcttcatataaagactgaat |
162 |
Q |
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||||||||||||||| |||||||||||||||||| ||||| |
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| T |
26014748 |
caggaacccaatgttcacgttcttcatataaagagtgaat |
26014709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 143
Target Start/End: Complemental strand, 6967514 - 6967394
Alignment:
| Q |
23 |
aatgtagttttcttgcctacatatttgtcnnnnnnngagttgatgctctctgatctttgagttgttgacatgccaccgaaaaaggtatctttcatgtaaa |
122 |
Q |
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|||||||||||||| | |||||||||||| || || |||||||||||||||||||||||||||| |||||| ||||| ||||| |||||||||| |
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| T |
6967514 |
aatgtagttttcttacatacatatttgtcaaaaaaagaattaatgctctctgatctttgagttgttgacaagccaccaaaaaatgtatcattcatgtaaa |
6967415 |
T |
|
| Q |
123 |
caggaacccaatgtttacgtt |
143 |
Q |
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|||||||||||||| ||||| |
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| T |
6967414 |
taggaacccaatgttcacgtt |
6967394 |
T |
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Back To:
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