View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18804_low_20 (Length: 303)
Name: NF18804_low_20
Description: NF18804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18804_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 84 - 289
Target Start/End: Original strand, 38239528 - 38239733
Alignment:
| Q |
84 |
gtggggtgtaagtcttttataaactactaaaatgtagattaatgttatgaatgaatacaattgtggtggtcacagaacaattttaaaacattaattataa |
183 |
Q |
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| T |
38239528 |
gtggggtgtaagtcttttataaactactaaaatctaaattaatgttatgaatgaatacaattgtggtggtcacagaacaattttaaaacattaattataa |
38239627 |
T |
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| Q |
184 |
cataaacttatgagcagaaaactttttatgatgaaagtaaaaaagtttacctggataaatttatagggatataacaagcaataggcagaaacaacatgta |
283 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38239628 |
cataaacttatgagcagacaactttttatgatgaaagtaaaaaggtttacctggataaatttatagggatataacaagcaataggcagaaacaacatgta |
38239727 |
T |
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| Q |
284 |
agagat |
289 |
Q |
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|||||| |
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| T |
38239728 |
agagat |
38239733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 7 - 83
Target Start/End: Complemental strand, 38238059 - 38237983
Alignment:
| Q |
7 |
gcagcacagaccataaggagggaaattcctgtgttcatgtgaagaggacaagtctcccatttcaaactggtggctat |
83 |
Q |
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| T |
38238059 |
gcagcacagaccataaggagggaaattcctgtgttcatgtgaagaggacaagtctcccatttcaaactggtggctat |
38237983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 38243034 - 38242955
Alignment:
| Q |
7 |
gcagcacagaccataaggagggaaattcctgtgttcatgtgaagaggacaagtctcccatttcaaactggtggctatgtg |
86 |
Q |
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| T |
38243034 |
gcagcacagaccatagggaggaaaatgggtgtgttcatgtgaagaggacaagtctcccatttcaaactggtggatatgtg |
38242955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 38220175 - 38220100
Alignment:
| Q |
11 |
cacagaccataaggagggaaattcctgtgttcatgtgaagaggacaagtctcccatttcaaactggtggctatgtg |
86 |
Q |
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|||| |||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
38220175 |
cacaaaccataaggatggaaatggttgtgttcatgtgaagaggataagtctcccatttcaaactggtggttatgtg |
38220100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 38226517 - 38226441
Alignment:
| Q |
10 |
gcacagaccataaggagggaaattcctgtgttcatgtgaagaggacaagtctcccatttcaaactggtggctatgtg |
86 |
Q |
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| T |
38226517 |
gcacagaccataaagaaagaaatggttgtgttgatgtgaagaggacaagtctcccactacaaactggtggctatgtg |
38226441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 38214112 - 38214063
Alignment:
| Q |
36 |
tgtgttcatgtgaagaggacaagtctcccatttcaaactggtggctatgt |
85 |
Q |
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| T |
38214112 |
tgtgttcatgtgatgaggacaagtctcccactacaaactggtggctatgt |
38214063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 38253387 - 38253308
Alignment:
| Q |
7 |
gcagcacagaccataaggagggaaattcctgtgttcatgtgaagaggacaagtctcccatttcaaactggtggctatgtg |
86 |
Q |
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| T |
38253387 |
gcagcatagatcaaaaggagggaaatgggtgtgttcatgtaaaaaggacaagtctcccactacaaaccggtggctatgtg |
38253308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 38248234 - 38248176
Alignment:
| Q |
7 |
gcagcacagaccataaggagggaaattcctgtgttcatgtgaagaggacaagtctccca |
65 |
Q |
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| T |
38248234 |
gcagcacagatcaataggagggaaatgggtgtgttcatgtgaaaaggacaagtctccca |
38248176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 17454616 - 17454537
Alignment:
| Q |
7 |
gcagcacagaccataaggagggaaattcctgtgttcatgtgaagaggacaagtctcccatttcaaactggtggctatgtg |
86 |
Q |
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| T |
17454616 |
gcagcacagaccatgaggagggaaatggttgtgttcatgtgaagaggacaagtctcccactgcaaactggtggctatgtg |
17454537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 17433537 - 17433458
Alignment:
| Q |
7 |
gcagcacagaccataaggagggaaattcctgtgttcatgtgaagaggacaagtctcccatttcaaactggtggctatgtg |
86 |
Q |
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|||||| ||||||| |||||| |||| |||||||||||||||||||||||||||||| | ||||||||||| |||||| |
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| T |
17433537 |
gcagcagagaccatgaggaggaaaatggttgtgttcatgtgaagaggacaagtctcccactacaaactggtggatatgtg |
17433458 |
T |
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