View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18804_low_21 (Length: 286)

Name: NF18804_low_21
Description: NF18804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18804_low_21
NF18804_low_21
[»] chr5 (7 HSPs)
chr5 (76-139)||(42076047-42076110)
chr5 (98-139)||(31571009-31571050)
chr5 (100-139)||(30786247-30786286)
chr5 (89-139)||(18191919-18191969)
chr5 (97-139)||(38450044-38450086)
chr5 (76-109)||(10869467-10869500)
chr5 (94-139)||(12042252-12042297)
[»] chr7 (4 HSPs)
chr7 (98-139)||(26608618-26608659)
chr7 (89-139)||(26621161-26621211)
chr7 (94-139)||(26619178-26619222)
chr7 (94-138)||(30089716-30089760)
[»] chr1 (4 HSPs)
chr1 (94-139)||(18308128-18308173)
chr1 (94-139)||(17112905-17112950)
chr1 (94-139)||(28636883-28636928)
chr1 (94-139)||(897435-897480)
[»] chr8 (2 HSPs)
chr8 (95-137)||(5000661-5000703)
chr8 (98-139)||(44719153-44719194)
[»] chr6 (3 HSPs)
chr6 (94-136)||(23904427-23904469)
chr6 (100-139)||(29667998-29668037)
chr6 (94-139)||(23264571-23264618)
[»] chr4 (3 HSPs)
chr4 (94-139)||(4881144-4881189)
chr4 (95-137)||(26075326-26075368)
chr4 (94-139)||(37751064-37751109)
[»] chr3 (3 HSPs)
chr3 (95-139)||(36035452-36035496)
chr3 (94-139)||(9633517-9633562)
chr3 (94-139)||(27259520-27259565)
[»] chr2 (5 HSPs)
chr2 (89-140)||(7702408-7702459)
chr2 (38-108)||(11017488-11017553)
chr2 (94-135)||(11017441-11017482)
chr2 (94-139)||(24479132-24479177)
chr2 (98-138)||(26734732-26734772)


Alignment Details
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 76 - 139
Target Start/End: Complemental strand, 42076110 - 42076047
Alignment:
Q  76 aaatgttactaaattaaattagtaacaattttcaaatgttactagatctcaattatgttgtagt 139  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42076110 aaatgttactaaatttaattagtaacaattttcaattgttactagatctcaattatgttgtagt 42076047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 139
Target Start/End: Complemental strand, 31571050 - 31571009
Alignment:
Q  98 taacaattttcaaatgttactagatctcaattatgttgtagt 139  Q
    ||||||||||||| ||||||||||| ||||||||||||||||    
T  31571050 taacaattttcaagtgttactagatgtcaattatgttgtagt 31571009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 139
Target Start/End: Complemental strand, 30786286 - 30786247
Alignment:
Q  100 acaattttcaaatgttactagatctcaattatgttgtagt 139  Q
    ||||||||||| ||||||||||||| ||||||||||||||    
T  30786286 acaattttcaagtgttactagatcttaattatgttgtagt 30786247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 139
Target Start/End: Original strand, 18191919 - 18191969
Alignment:
Q  89 ttaaattagtaacaattttcaaatgttactagatctcaattatgttgtagt 139  Q
    |||| ||||| ||||||||||| |||||||| ||||||||||| |||||||    
T  18191919 ttaatttagttacaattttcaattgttactaaatctcaattattttgtagt 18191969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 139
Target Start/End: Original strand, 38450044 - 38450086
Alignment:
Q  97 gtaacaattttcaaatgttactagatctcaattatgttgtagt 139  Q
    |||||||||||||  ||||||||||| ||||||||||||||||    
T  38450044 gtaacaattttcatgtgttactagatgtcaattatgttgtagt 38450086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 109
Target Start/End: Complemental strand, 10869500 - 10869467
Alignment:
Q  76 aaatgttactaaattaaattagtaacaattttca 109  Q
    ||||||||||||||| ||||||||||||||||||    
T  10869500 aaatgttactaaatttaattagtaacaattttca 10869467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 139
Target Start/End: Original strand, 12042252 - 12042297
Alignment:
Q  94 ttagtaacaattttcaaatgttactagatctcaattatgttgtagt 139  Q
    ||||| ||||||||||||| ||||| ||||| ||||||||||||||    
T  12042252 ttagttacaattttcaaatattactggatcttaattatgttgtagt 12042297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 139
Target Start/End: Original strand, 26608618 - 26608659
Alignment:
Q  98 taacaattttcaaatgttactagatctcaattatgttgtagt 139  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  26608618 taacaattttcaaatgttactagatgtcaattatgttgtagt 26608659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 139
Target Start/End: Original strand, 26621161 - 26621211
Alignment:
Q  89 ttaaattagtaacaattttcaaatgttactagatctcaattatgttgtagt 139  Q
    |||| ||||||||||||||||| ||||||||||| || |||| ||||||||    
T  26621161 ttaatttagtaacaattttcaagtgttactagatgtccattaagttgtagt 26621211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 139
Target Start/End: Original strand, 26619178 - 26619222
Alignment:
Q  94 ttagtaacaattttcaaatgttactagatctcaattatgttgtagt 139  Q
    ||||||||||||| ||| ||||||||||| ||||||||||||||||    
T  26619178 ttagtaacaattt-caagtgttactagatgtcaattatgttgtagt 26619222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 30089760 - 30089716
Alignment:
Q  94 ttagtaacaattttcaaatgttactagatctcaattatgttgtag 138  Q
    ||||||||| ||||||| ||||||||||| |||||||| ||||||    
T  30089760 ttagtaacagttttcaagtgttactagatgtcaattattttgtag 30089716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 18308173 - 18308128
Alignment:
Q  94 ttagtaacaattttcaaatgttactagatctcaattatgttgtagt 139  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||    
T  18308173 ttagtaacaattttcaaatgttactagatgtcaattatgttttagt 18308128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 17112950 - 17112905
Alignment:
Q  94 ttagtaacaattttcaaatgttactagatctcaattatgttgtagt 139  Q
    ||||||||||||||||| | ||||||||| ||||||||||||||||    
T  17112950 ttagtaacaattttcaattattactagatttcaattatgttgtagt 17112905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 28636928 - 28636883
Alignment:
Q  94 ttagtaacaattttcaaatgttactagatctcaattatgttgtagt 139  Q
    ||||| |||||||| |||||||||||||||| ||||||||||||||    
T  28636928 ttagttacaatttttaaatgttactagatcttaattatgttgtagt 28636883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 897480 - 897435
Alignment:
Q  94 ttagtaacaattttcaaatgttactagatctcaattatgttgtagt 139  Q
    ||||||||||||||||| ||| |||| |||| ||||||||||||||    
T  897480 ttagtaacaattttcaactgtaactatatcttaattatgttgtagt 897435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 137
Target Start/End: Complemental strand, 5000703 - 5000661
Alignment:
Q  95 tagtaacaattttcaaatgttactagatctcaattatgttgta 137  Q
    |||||||||||||||| ||| ||||||||||||||||||||||    
T  5000703 tagtaacaattttcaattgtaactagatctcaattatgttgta 5000661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 139
Target Start/End: Original strand, 44719153 - 44719194
Alignment:
Q  98 taacaattttcaaatgttactagatctcaattatgttgtagt 139  Q
    ||||| |||||||||||||||| ||||||| |||||||||||    
T  44719153 taacatttttcaaatgttactaaatctcaagtatgttgtagt 44719194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 136
Target Start/End: Original strand, 23904427 - 23904469
Alignment:
Q  94 ttagtaacaattttcaaatgttactagatctcaattatgttgt 136  Q
    |||||| |||||||||| |||||||||||||||||||||||||    
T  23904427 ttagtagcaattttcaagtgttactagatctcaattatgttgt 23904469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 139
Target Start/End: Original strand, 29667998 - 29668037
Alignment:
Q  100 acaattttcaaatgttactagatctcaattatgttgtagt 139  Q
    ||||||||||| |||||| |||||||||||||||||||||    
T  29667998 acaattttcaattgttacaagatctcaattatgttgtagt 29668037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 139
Target Start/End: Original strand, 23264571 - 23264618
Alignment:
Q  94 ttagtaacaattttcaaa--tgttactagatctcaattatgttgtagt 139  Q
    |||||||||||||||||   | ||||||||||||||||||||||||||    
T  23264571 ttagtaacaattttcaatattcttactagatctcaattatgttgtagt 23264618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 139
Target Start/End: Original strand, 4881144 - 4881189
Alignment:
Q  94 ttagtaacaattttcaaatgttactagatctcaattatgttgtagt 139  Q
    ||||||||||||||||| ||||||| ||| ||||||||||||||||    
T  4881144 ttagtaacaattttcaagtgttactggatgtcaattatgttgtagt 4881189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 137
Target Start/End: Original strand, 26075326 - 26075368
Alignment:
Q  95 tagtaacaattttcaaatgttactagatctcaattatgttgta 137  Q
    |||||||||||||||| ||||| ||||| ||||||||||||||    
T  26075326 tagtaacaattttcaattgttattagatttcaattatgttgta 26075368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 139
Target Start/End: Original strand, 37751064 - 37751109
Alignment:
Q  94 ttagtaacaattttcaaatgttactagatctcaattatgttgtagt 139  Q
    ||||| |||||||||| |||||||| ||| ||||||||||||||||    
T  37751064 ttagtgacaattttcatatgttactggatgtcaattatgttgtagt 37751109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 36035496 - 36035452
Alignment:
Q  95 tagtaacaattttcaaatgttactagatctcaattatgttgtagt 139  Q
    ||||||||||||| || ||||||||||| ||||||||||||||||    
T  36035496 tagtaacaattttgaagtgttactagatgtcaattatgttgtagt 36035452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 139
Target Start/End: Original strand, 9633517 - 9633562
Alignment:
Q  94 ttagtaacaattttcaaatgttactagatctcaattatgttgtagt 139  Q
    ||||||| | ||||||| |||||||| |||||||||||||||||||    
T  9633517 ttagtaatagttttcaagtgttactaaatctcaattatgttgtagt 9633562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 139
Target Start/End: Original strand, 27259520 - 27259565
Alignment:
Q  94 ttagtaacaattttcaaatgttactagatctcaattatgttgtagt 139  Q
    ||||||| | ||||||| |||||||| |||||||||||||||||||    
T  27259520 ttagtaatagttttcaattgttactaaatctcaattatgttgtagt 27259565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 140
Target Start/End: Complemental strand, 7702459 - 7702408
Alignment:
Q  89 ttaaattagtaacaattttcaaatgttactagatctcaattatgttgtagta 140  Q
    |||| ||||||| ||||||||  ||||||||||| |||||||||||||||||    
T  7702459 ttaatttagtaataattttcatgtgttactagatgtcaattatgttgtagta 7702408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 108
Target Start/End: Complemental strand, 11017553 - 11017488
Alignment:
Q  38 tttagtaatacggacttcacctaacaattgcttagcttaaatgttactaaattaaattagtaacaattttc 108  Q
    |||||||| |||||||| |||||||||||| | |     |||||||||||||| |||||||||||||||||    
T  11017553 tttagtaacacggactttacctaacaattggtca-----aatgttactaaatttaattagtaacaattttc 11017488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 135
Target Start/End: Complemental strand, 11017482 - 11017441
Alignment:
Q  94 ttagtaacaattttcaaatgttactagatctcaattatgttg 135  Q
    ||||||||  ||||||| ||||||||||||||||||||||||    
T  11017482 ttagtaacggttttcaattgttactagatctcaattatgttg 11017441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 24479177 - 24479132
Alignment:
Q  94 ttagtaacaattttcaaatgttactagatctcaattatgttgtagt 139  Q
    ||||||| ||||||||| |||||||| |||||||||||||| ||||    
T  24479177 ttagtaataattttcaagtgttactatatctcaattatgttatagt 24479132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 26734772 - 26734732
Alignment:
Q  98 taacaattttcaaatgttactagatctcaattatgttgtag 138  Q
    ||||||||||||||||||| || |||||||||||| |||||    
T  26734772 taacaattttcaaatgttattatatctcaattatgctgtag 26734732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University