View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18804_low_24 (Length: 264)
Name: NF18804_low_24
Description: NF18804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18804_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 14155807 - 14156060
Alignment:
| Q |
1 |
ccttctctctacatgtgttggtgttattaattttctgatggatattgcttatattttacggataagtaggcaggtcgattgaataatagaaaggtactta |
100 |
Q |
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| T |
14155807 |
ccttctctctacatgtgttggtgttattatgtttctgatggatattgcttatattttacggataagtaggcaggtcgattgaataatagaaaggtactta |
14155906 |
T |
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| Q |
101 |
gggttaaaggttaatcttgtaaactagaccgtagtatttacacatgtaaatagtaaaccctaagcttcaataatagaaaggtacttccgcgactatgcag |
200 |
Q |
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| T |
14155907 |
gggttaaaggttaatcttgtaaactagaccgtagtatttacacatgtaaatagtaaaccctaagcttcaataatagaaaggtacttccgcgactatgcag |
14156006 |
T |
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| Q |
201 |
cggcgtaggaacaataagctgaactccatgatcaaatttcgcgtgttctctgtg |
254 |
Q |
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| T |
14156007 |
cggcgtaggaacaataagccgaactccatgatcaaatctcgcgtgttctctgtg |
14156060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 12 - 253
Target Start/End: Complemental strand, 1038329 - 1038088
Alignment:
| Q |
12 |
catgtgttggtgttattaattttctgatggatattgcttatattttacggataagtaggcaggtcgattgaataatagaaaggtacttagggttaaaggt |
111 |
Q |
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| T |
1038329 |
catgtgttggtgttattatgtttctgatggaaattgcgtatattttatgaataagtaggcaggtcgattgaataatagaaaggtatgtaggattcaaggt |
1038230 |
T |
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| Q |
112 |
taatcttgtaaactagaccgtagtatttacacatgtaaatagtaaaccctaagcttcaataatagaaaggtacttccgcgactatgcagcggcgtaggaa |
211 |
Q |
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| T |
1038229 |
taatcttgtcaactagaccgtagtatttacacaagtaatcaataaaccctaagcttgaataatagaaaggtacttccgccactatgcagcggcgtaggaa |
1038130 |
T |
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| Q |
212 |
caataagctgaactccatgatcaaatttcgcgtgttctctgt |
253 |
Q |
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| T |
1038129 |
caataggccgaactccataatcaaatctcacgtgttctctgt |
1038088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 185
Target Start/End: Complemental strand, 6522223 - 6522148
Alignment:
| Q |
115 |
tcttgtaaactagaccgtagtatttacaca-----tgtaaatagtaaaccctaagcttcaataatagaaaggtact |
185 |
Q |
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| T |
6522223 |
tcttgtaaactagaccgtagtatttaaacacaagttgtaatttgtaaatcctaagtttgaataatagaaaggtact |
6522148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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