View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18804_low_25 (Length: 244)
Name: NF18804_low_25
Description: NF18804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18804_low_25 |
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| [»] chr3 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0042 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 52 - 244
Target Start/End: Original strand, 3555812 - 3556004
Alignment:
| Q |
52 |
gtgaactttgttgctatggttagctaacgaaatgcccgacattttggtaccggtttcataattttaggttcagtattgaggtctggaggagagtttgcag |
151 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||| ||||||||||||||| || |
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| T |
3555812 |
gtgaactttgttgctatggttagccaacgaaatgcccgacattttgataccggtttcatgattttaggttccgtattgaggcctggaggagagtttgaag |
3555911 |
T |
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| Q |
152 |
taaagggactgatatgggttttgtgctgaaccaaggaatcgagttgttggtgataagctatgggctagagtttggtgtaaaagcttaggagct |
244 |
Q |
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| T |
3555912 |
taaggggactgatatgggttttgtgctgaaccaaggaatcgagttgttggtgataagctatggggtagggtttggtgtagaagcttaggagct |
3556004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 52 - 244
Target Start/End: Original strand, 380154 - 380347
Alignment:
| Q |
52 |
gtgaactttgttgctatggttagctaacgaaatgcccgacattttggtaccggtttcataattttaggttcagtattgaggtctggaggagagtttgcag |
151 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||| ||||||| ||||||||||||||| || |
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| T |
380154 |
gtgaactttgttgctatggttagctaacgaaattcccgacattttggtatcggtttcatgattttaggttcagcattgaggcctggaggagagtttgaag |
380253 |
T |
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| Q |
152 |
taaagggactgatatgggttttgtgctgaa-ccaaggaatcgagttgttggtgataagctatgggctagagtttggtgtaaaagcttaggagct |
244 |
Q |
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| T |
380254 |
taaggggactgatatgggttttgtgttgaacccaaggaatcgagttgtttgtgataagctatgggctagggtttggtgtagaagcttaggagct |
380347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 52 - 244
Target Start/End: Original strand, 23307481 - 23307673
Alignment:
| Q |
52 |
gtgaactttgttgctatggttagctaacgaaatgcccgacattttggtaccggtttcataattttaggttcagtattgaggtctggaggagagtttgcag |
151 |
Q |
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| T |
23307481 |
gtgaactttgtttctatggttagctaacgaaatgcccgacattttggtaccggtttcatgattttaggttcagtattgaggcctggaggagagtttgaag |
23307580 |
T |
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| Q |
152 |
taaagggactgatatgggttttgtgctgaaccaaggaatcgagttgttggtgataagctatgggctagagtttggtgtaaaagcttaggagct |
244 |
Q |
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| T |
23307581 |
taaggggactgatacgagttttgtgctgaaccaaggaataaatttgttggtgataagctatgggctagggtttggtgtagaagcttaggagct |
23307673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 29684966 - 29685018
Alignment:
| Q |
58 |
tttgttgctatggttagctaacgaaatgcccgacattttggtaccggtttcat |
110 |
Q |
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| T |
29684966 |
tttgatgctatggttagataacgaaattccggacgttttggtaccagtttcat |
29685018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 50 - 244
Target Start/End: Complemental strand, 22828354 - 22828160
Alignment:
| Q |
50 |
aagtgaactttgttgctatggttagctaacgaaatgcccgacattttggtaccggtttcataattttaggttcagtattgaggtctggaggagagtttgc |
149 |
Q |
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||||||||||| |||||||||||||||||| |||| ||||||||||| ||||||||||||| ||||||||||| ||||||||||||| || ||||||| |
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| T |
22828354 |
aagtgaactttattgctatggttagctaacaaaattcccgacattttcgtaccggtttcatgattttaggttcggtattgaggtctgaagtggagtttga |
22828255 |
T |
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| Q |
150 |
agtaaagggactgatatgggttttgtgctgaaccaaggaatcgagttgttggtgataagctatgggctagagtttggtgtaaaagcttaggagct |
244 |
Q |
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| T |
22828254 |
agtaaggcgactgatatgggttttgtgctgaaccaaggaatcgagttgttggtgataagctatgggctagggtttggtgtagaagcttagaagct |
22828160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 140
Target Start/End: Original strand, 20919002 - 20919083
Alignment:
| Q |
59 |
ttgttgctatggttagctaacgaaatgcccgacattttggtaccggtttcataattttaggttcagtattgaggtctggagg |
140 |
Q |
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|||||||||| | ||||||||||||| ||||||||||||||| ||||||| | ||| ||||||||||| || |||||||| |
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| T |
20919002 |
ttgttgctattgatagctaacgaaattttcgacattttggtaccagtttcatgagttttggttcagtattaagttctggagg |
20919083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 19053227 - 19053279
Alignment:
| Q |
58 |
tttgttgctatggttagctaacgaaatgcccgacattttggtaccggtttcat |
110 |
Q |
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| T |
19053227 |
tttgatgctatggttagctaacgaaattctggacgttttggtaccagtttcat |
19053279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 25717949 - 25718001
Alignment:
| Q |
58 |
tttgttgctatggttagctaacgaaatgcccgacattttggtaccggtttcat |
110 |
Q |
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|||| |||||||||||||||||||||| || ||| |||| ||||| ||||||| |
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| T |
25717949 |
tttgatgctatggttagctaacgaaattccggacgttttcgtaccagtttcat |
25718001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 140
Target Start/End: Original strand, 7145 - 7226
Alignment:
| Q |
59 |
ttgttgctatggttagctaacgaaatgcccgacattttggtaccggtttcataattttaggttcagtattgaggtctggagg |
140 |
Q |
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||||| |||||||||||||||||||| ||| | ||||| ||||||||||| | ||| ||| |||||||||||||||||| |
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| T |
7145 |
ttgtttctatggttagctaacgaaatttccgtcgctttggcaccggtttcatgaattttggtcaagtattgaggtctggagg |
7226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 140
Target Start/End: Original strand, 14557 - 14638
Alignment:
| Q |
59 |
ttgttgctatggttagctaacgaaatgcccgacattttggtaccggtttcataattttaggttcagtattgaggtctggagg |
140 |
Q |
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||||| |||||||||||||||||||| ||| | ||||| ||||||||||| | ||| ||| |||||||||||||||||| |
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| T |
14557 |
ttgtttctatggttagctaacgaaatttccgtcgctttggcaccggtttcatgaattttggtcaagtattgaggtctggagg |
14638 |
T |
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