View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18804_low_3 (Length: 663)
Name: NF18804_low_3
Description: NF18804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18804_low_3 |
 | |
|
| [»] scaffold0252 (1 HSPs) |
| | |
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Alignment Details
Target: chr8 (Bit Score: 476; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 19 - 646
Target Start/End: Original strand, 4566546 - 4567176
Alignment:
| Q |
19 |
agtacaccagactgaaggtgcttattccatagggtgttgtttccgaaattctgaggagccgtttgttcatgctcagttagcgtggaaggttgtgaatttg |
118 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4566546 |
agtacaccagactggaggtgcttattccataggatgttgtttccgaaattctaaggagccgtttgttcatgctcagtcagcgtggaaggttgtgaatttg |
4566645 |
T |
|
| Q |
119 |
acagttctcaaaggggaaacttgggctatgcaacatgctactctggtagccattgacaaagattgacatagagtaatttttgaatcggattcaaatacgc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4566646 |
acagttctcaaaggggaaacttgggctatgcagcatgctactctggtagccattgacaaagattgacatagagtaatttttgaatcggattcaaatacgc |
4566745 |
T |
|
| Q |
219 |
ttatggattgtatctctttcccaacatgtggcaggttcgagtttcatgcattagtttctcttattaagtctaatttagttttacatctcaactttaaggt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| | |
|
|
| T |
4566746 |
ttatggattgtatctctttcccaacatgtggcaggttcgagtttcatgcattagtttctcttattaaatctaatttagttttacatcccaactttaagat |
4566845 |
T |
|
| Q |
319 |
ttaatttgttaggcgataagcgaacatgattgcttacattcttattagagtggcttgttattgggctagtcaccgtatctttgagatttatcctcctcat |
418 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||||||| ||||| ||| ||||||| | |||| ||| ||| |||||||||||||||| |||| |
|
|
| T |
4566846 |
ttaatttgttaggcgataaacgaacatgattgctcacattcttgttagaacggcatgttattagattagttaccatatatttgagatttatcctcttcat |
4566945 |
T |
|
| Q |
419 |
attgattctattttaagtaatgatatgaattaagtttacgtt--gatnnnnnnnntctcaaatatacttgtcgaggataagaaactttaggccctataat |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || | |||||| ||||||||||||||||||||||||||||||| || || |
|
|
| T |
4566946 |
attgattctattttaagtaatgatatgaattaagtttactttcgtaaaaaaaaaatctcaattatacttgtcgaggataagaaactttaggccataggat |
4567045 |
T |
|
| Q |
517 |
cttaa-atataatatgataacataatacctaatcaacctaatctgtgaagacatgaaatattaatcaaaataagttgtaggtccattagttacgtcaggt |
615 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4567046 |
cttaacatataatatgataacataatacctaatcaacctaatctgtgaagacatgaaatattaatcaaaataagttgtaggtccattagttacgtcaggt |
4567145 |
T |
|
| Q |
616 |
gcatgtgaaactttccagatataaagatgat |
646 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
4567146 |
gcatgtgaaactttccagatataaagatgat |
4567176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 168 - 455
Target Start/End: Complemental strand, 8670430 - 8670144
Alignment:
| Q |
168 |
ccattgacaaagattgacatagagtaatttttgaatcggattcaaatacgcttatggattgtatctctttcccaacatgtggcaggttcgagtttcatgc |
267 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||| ||| ||||||||||||||| ||||||||||||||| |||||||||||| || | |||||||||||| |
|
|
| T |
8670430 |
ccattgacaaaggttgacatagagtagttttttaattagattcaaatacgcttgtggattgtatctcttccccaacatgtggtagatccgagtttcatgc |
8670331 |
T |
|
| Q |
268 |
attagtttctcttattaagtctaatttagttttacatctcaactttaaggtttaatttgttaggcgataagcgaacatgattgcttacattcttattaga |
367 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||| ||||||| |||| | |||||||||||| || | |||||| ||||| ||| ||||| ||| |
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|
| T |
8670330 |
attagtt-ctcttattaagtctattttagttttacatcccaactttgaggtaaagtttgttaggcgacaaacaaacatggttgctcacactcttactagg |
8670232 |
T |
|
| Q |
368 |
gtggcttgttattgggctagtcaccgtatctttgagatttatcctcctcatattgattctattttaagtaatgatatgaattaagttt |
455 |
Q |
| |
|
| ||| |||| |||| |||||||||||||||||||||||| || |||| |||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
8670231 |
gcggcctgttcttggactagtcaccgtatctttgagatttgtcttccttgtattgactctattttaagtaaatatatgaattaagttt |
8670144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 19 - 158
Target Start/End: Complemental strand, 8671025 - 8670887
Alignment:
| Q |
19 |
agtacaccagactgaaggtgcttattccatagggtgttgtttccgaaattctgaggagccgtttgttcatgctcagttagcgtggaaggttgtgaatttg |
118 |
Q |
| |
|
||||||||||| || |||||||||||||||| ||||||||||||| |||| ||||| || ||||||||||||||||| ||| ||||| |||| ||||||| |
|
|
| T |
8671025 |
agtacaccagaatgtaggtgcttattccatatggtgttgtttccggaattttgagg-gcggtttgttcatgctcagtcagcatggaaagttgcgaatttg |
8670927 |
T |
|
| Q |
119 |
acagttctcaaaggggaaacttgggctatgcaacatgcta |
158 |
Q |
| |
|
|| |||||| || ||||| |||||||| |||| ||||||| |
|
|
| T |
8670926 |
acggttctcgaatgggaagcttgggctctgcagcatgcta |
8670887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 69 - 457
Target Start/End: Original strand, 13092 - 13478
Alignment:
| Q |
69 |
ctgaggagccgtttgttcatgctcagttagcgtggaaggttgtgaatttgacagttctcaaaggggaaacttgggctatgcaacatgctactctggtagc |
168 |
Q |
| |
|
|||||| || ||||||||||| ||||| |||||||||||||| |||||||||||||||| ||| |||| |||||||| |||||||||||| | |||||| |
|
|
| T |
13092 |
ctgaggggcggtttgttcatgttcagtcagcgtggaaggttgcgaatttgacagttctcgaagcggaagcttgggctctgcaacatgctattaaggtagc |
13191 |
T |
|
| Q |
169 |
cattgacaaagattgacatagagtaatttttgaatcggattcaaatacgcttatggattgtatctctttcccaacatgtggcaggttcgagtttcatgca |
268 |
Q |
| |
|
|||||||||| |||| ||||||||| |||||||||| ||||||||||| ||| ||||||||||||||| ||||||| |||||||| |||||||||||| |
|
|
| T |
13192 |
cattgacaaaaattggcatagagtactttttgaatcagattcaaatacacttgtggattgtatctcttccccaacacatggcaggtctgagtttcatgca |
13291 |
T |
|
| Q |
269 |
ttagtttctcttattaagtctaatttagttttacatctcaactttaaggtttaatttgttaggcgataagcgaacatgattgcttacattcttattagag |
368 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||||| |||| | |||||||| ||| ||||||||||| |||| || |||| ||| | |
|
|
| T |
13292 |
ttagtttctcttattaagtctattttagttttacatcccaactttgaggtaaagtttgttagacgacaagcgaacatggctgct--cactcttgctaggg |
13389 |
T |
|
| Q |
369 |
tggcttgttattgggctagtcaccgtatctttgagatttatcctcctcatattgattctattttaagtaatgatatgaattaagtttac |
457 |
Q |
| |
|
||| |||| |||||||||||||||| |||||||||||| ||||||| |||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
13390 |
cggcctgttcttgggctagtcaccgtgtctttgagatttgtcctccttgtattgactatattttaagtaatgatatgaattaagtttac |
13478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 34 - 455
Target Start/End: Complemental strand, 49525445 - 49525024
Alignment:
| Q |
34 |
aggtgcttattccatagggtgttgtttccgaaattctgaggagccgtttgttcatgctcagttagcgtggaaggttgtgaatttgacagttctcaaaggg |
133 |
Q |
| |
|
|||| ||||||||| | |||||||||||| |||||||||| || ||||||||||||||||| || ||||||| || |||||| || |||||||||||| |
|
|
| T |
49525445 |
aggtacttattccacaaggtgttgtttccagaattctgaggggcggtttgttcatgctcagtccgcatggaaggatgcgaatttaacggttctcaaaggg |
49525346 |
T |
|
| Q |
134 |
gaaacttgggctatgcaacatgctactctggtagccattgacaaagattgacatagagtaatttttgaatcggattcaaatacgcttatggattgtatct |
233 |
Q |
| |
|
||| |||||||| |||||||||||| || ||||||||||||| ||| ||| |||||||||||||||||||| |||||||||| |||| |||||||||||| |
|
|
| T |
49525345 |
gaagcttgggctctgcaacatgctattcaggtagccattgacgaaggttggcatagagtaatttttgaatcagattcaaatatgcttgtggattgtatct |
49525246 |
T |
|
| Q |
234 |
ctttcccaacatgtggcaggttcgagtttcatgcattagtttctcttattaagtctaatttagttttacatctcaactttaaggtttaatttgttaggcg |
333 |
Q |
| |
|
||| ||||||| ||||||| | |||||||||||||||||||||| |||||||||||| ||||||||||||| ||| ||| |||| | ||||||||||| |
|
|
| T |
49525245 |
cttccccaacacgtggcagatccgagtttcatgcattagtttcttttattaagtctattttagttttacattccaattttgaggtaaagtttgttaggcg |
49525146 |
T |
|
| Q |
334 |
ataagcgaacatgattgcttacattcttattagagtggcttgttattgggctagtcaccgtatctttgagatttatcctcctcatattgattctatttta |
433 |
Q |
| |
|
| ||||||||||| |||| ||| ||| ||| | || |||| |||| ||||||||| ||| |||||||||| ||||||| |||||| ||||||||| |
|
|
| T |
49525145 |
acaagcgaacatggctgctcacacccttgctagggcggtctgttcttggactagtcaccatatttttgagatttgtcctccttgtattgactctatttta |
49525046 |
T |
|
| Q |
434 |
agtaatgatatgaattaagttt |
455 |
Q |
| |
|
|||||||||||| ||||||||| |
|
|
| T |
49525045 |
agtaatgatatgcattaagttt |
49525024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 4e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 33582636 - 33582820
Alignment:
| Q |
19 |
agtacaccagactgaaggtgcttattccatagggtgttgtttccgaaattctgaggagccgtttgttcatgctcagttagcgtggaaggttgtgaatttg |
118 |
Q |
| |
|
||||||| |||||| || |||||||||||||||||||||||| ||||||||||||| | ||||||||||||||| | |||||||||||||| ||||||| |
|
|
| T |
33582636 |
agtacacaagactggagttgcttattccatagggtgttgttttcgaaattctgagggtcggtttgttcatgctcaatcagcgtggaaggttgcgaatttg |
33582735 |
T |
|
| Q |
119 |
acag---ttctcaaaggggaaacttgggctatgcaacatgctactctggtagccattgacaaagattgacatagagtaatttttg |
200 |
Q |
| |
|
|||| |||| ||||||| ||||||||||||| ||||||| || |||||||||||||||||| || |||||||||||||||| |
|
|
| T |
33582736 |
acagttcttcttggaggggaagcttgggctatgcagcatgctattcaggtagccattgacaaagagtggcatagagtaatttttg |
33582820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 226 - 455
Target Start/End: Original strand, 33582818 - 33583044
Alignment:
| Q |
226 |
ttgtatctctttcccaacatgtggcaggttcgagtttcatgcattagtttctcttattaagtctaatttagttttacatctcaactttaaggtttaattt |
325 |
Q |
| |
|
||||||||||| ||||||| |||||| | ||||||||||| |||||||||||||||||||||| |||||||||||||| |||||| |||| | ||| |
|
|
| T |
33582818 |
ttgtatctcttccccaacacatggcagatccgagtttcatgtcttagtttctcttattaagtctattttagttttacatcctaactttgaggtaaagttt |
33582917 |
T |
|
| Q |
326 |
gttaggcgataagcgaacatgattgcttacattcttattagagtggcttgttattgggctagtcaccgtatctttgagatttatcctcctcatattgatt |
425 |
Q |
| |
|
|||||| ||||||||||| |||| ||| |||| || | |||||||| |||||||||||| ||||| |||||||||| |||| || |||||||| |
|
|
| T |
33582918 |
---aggcgacaagcgaacatggctgctcacactcttgctaaggcggcttgttcttgggctagtcatcgtatatttgagatttgtcctgcttgtattgatt |
33583014 |
T |
|
| Q |
426 |
ctattttaagtaatgatatgaattaagttt |
455 |
Q |
| |
|
||||||||| |||||||||||||||||||| |
|
|
| T |
33583015 |
ctattttaaataatgatatgaattaagttt |
33583044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 3e-31; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 222 - 407
Target Start/End: Complemental strand, 32399464 - 32399279
Alignment:
| Q |
222 |
tggattgtatctctttcccaacatgtggcaggttcgagtttcatgcattagtttctcttattaagtctaatttagttttacatctcaactttaaggttta |
321 |
Q |
| |
|
||||||||||||||||||||||| ||||| || || ||||||||||||||||||||||||||||||| |||| ||||||||| ||||||| |||| | |
|
|
| T |
32399464 |
tggattgtatctctttcccaacacatggcaagtctgaatttcatgcattagtttctcttattaagtctattttaattttacatcccaactttgaggtaaa |
32399365 |
T |
|
| Q |
322 |
atttgttaggcgataagcgaacatgattgcttacattcttattagagtggcttgttattgggctagtcaccgtatctttgagattt |
407 |
Q |
| |
|
|||||||||| | || | |||||| |||| ||| ||||| | | | ||| |||||||||| || ||||||||||||||| |||| |
|
|
| T |
32399364 |
gtttgttaggcaacaaacaaacatggctgctcacactcttacttgggcggcatgttattgggttaatcaccgtatctttgaaattt |
32399279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 451
Target Start/End: Original strand, 44655092 - 44655125
Alignment:
| Q |
418 |
tattgattctattttaagtaatgatatgaattaa |
451 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |
|
|
| T |
44655092 |
tattgactctattttaagtaatgatatgaattaa |
44655125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 409 - 461
Target Start/End: Complemental strand, 22573137 - 22573085
Alignment:
| Q |
409 |
tcctcctcatattgattctattttaagtaatgatatgaattaagtttacgttg |
461 |
Q |
| |
|
||||||| ||||||| | |||||||| |||||||||||||||| ||| ||||| |
|
|
| T |
22573137 |
tcctccttatattgactttattttaaataatgatatgaattaaatttgcgttg |
22573085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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