View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18804_low_4 (Length: 614)
Name: NF18804_low_4
Description: NF18804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18804_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 398; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 70 - 528
Target Start/End: Original strand, 8372461 - 8372921
Alignment:
| Q |
70 |
ttagtgggtttattaaatataaattaattaagtttcctatttagcataatcttaggtttttagtgggtttattaaataaaagttaattaaatttcctaat |
169 |
Q |
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| T |
8372461 |
ttagtgggtttattaaataaaagttaattaaatttcctaattagcataatcttaggtttttagtgggtttattaaataaaagttaattaaatttcctaat |
8372560 |
T |
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| Q |
170 |
tagcataatcttaggtttttgtctttgtggaccatattagtaaattaattgagcatactcaggccaactccgaaagcttatcctatacactttcactaat |
269 |
Q |
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| T |
8372561 |
tagcataatcttaggtttttgtctttgtggaccatattagtaaattaattgagcatactcaggccaactccgaaagcttatcctatacactttcactaat |
8372660 |
T |
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| Q |
270 |
caagtgctacaaataaataaaagtgttaccaatgaataaatgaaattaaacaaccactcttgttctgacagaaatgttaaatgcatgattaattttgaaa |
369 |
Q |
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| T |
8372661 |
caagtgctacaaataaataaaagtgttaccaataaataaatgaaattaaacaaccactcttgttctgacagaaatgttaaatgcatgattaattttgaaa |
8372760 |
T |
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| Q |
370 |
taaaataatagattccattaaaatgtagtatatggaaaggagg--nnnnnnnntatgttgaaaggtaaatccaccatatcataatcacaactagatccta |
467 |
Q |
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| T |
8372761 |
taaaataatagattccattaaaatgtagtatatggaaaggaggaaaaaaaatatatattgaaaggtaaatccaccatatcataatcacaactagatccta |
8372860 |
T |
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| Q |
468 |
actctagagattaaattaataaactagttagagaaaacagatgaacctggagaataataaa |
528 |
Q |
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| T |
8372861 |
actctagagattaaattaataaactagttagacaaaacagatgaacctggagaataataaa |
8372921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 8372350 - 8372521
Alignment:
| Q |
18 |
ttttgaaagcattactgtttggaattgtgtagataaccaattagaagaaggattagtgggtttattaaatataaattaattaagtttcctatttagcata |
117 |
Q |
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| T |
8372350 |
ttttgaaagcattactgtttggaattgtgtagataaccaattagaagaaggattagtgggtttattaaatataaattaattaagtttcctatttagcata |
8372449 |
T |
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| Q |
118 |
atcttaggtttttagtgggtttattaaataaaagttaattaaatttcctaattagcataatcttaggttttt |
189 |
Q |
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| T |
8372450 |
atcttaggtttttagtgggtttattaaataaaagttaattaaatttcctaattagcataatcttaggttttt |
8372521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 561 - 607
Target Start/End: Original strand, 8373001 - 8373047
Alignment:
| Q |
561 |
ataagttactcgaccaaagataatcttattcgagatattcttggaca |
607 |
Q |
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| T |
8373001 |
ataagttcctcgaccaaagataatcttattcgagatattgttggaca |
8373047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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