View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18804_low_5 (Length: 569)
Name: NF18804_low_5
Description: NF18804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18804_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 522; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 22 - 559
Target Start/End: Complemental strand, 12550740 - 12550203
Alignment:
| Q |
22 |
tttctttcatatcatagatcgacacgtgtgtgaccataattgttaccccaatttaaaaccttacttttcataattaaaatgagagattaccaagccatac |
121 |
Q |
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| T |
12550740 |
tttctttcatatcatagatcgacatgtgtgtgaccataattgttaccccaatttaaaaccttacttttcataattaaaatgagagattaccaagccatac |
12550641 |
T |
|
| Q |
122 |
gtaccttctgcaaaggttctgcatcaggttctacaattttaataaaatgaataaacctgcaagcaacattaataattgcaccacttgattatttgttaat |
221 |
Q |
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| T |
12550640 |
gtaccttctgcaaaggatctgcatcaggttctacaattttaataaaatgaataaacctgcaagcaacattaataattgcaccacttgatcatttgttaat |
12550541 |
T |
|
| Q |
222 |
catcttagacctcagaattagtcactctactttctggtatagatttttatggccaaccttaatattcaaagatttggtaaataaagatttaaaaagaaat |
321 |
Q |
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| T |
12550540 |
catcttagacctcagaattagtcactctactttctggtatagatttttatggccaaccttaatattcaaagatttggtaaataaagatttaaaaagaaat |
12550441 |
T |
|
| Q |
322 |
tctgagttgcttgttttctcatcaatggtgtcacaacttttgtcattttctttttatttgcatgcatcggatacattgttattaccaaccaacctctgca |
421 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
12550440 |
tctgagttgcttgttttctcatcaatggtgtcacaacttttgtcattttctttttatttgcatgcatcgaatacattgttattaccaaccaacctctgca |
12550341 |
T |
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| Q |
422 |
tcattgataattctctcaagcattaagcagtctccacctgctcccaatccatcaatgttgtcttcattgtagggttaaccttaatcacacctttttcatt |
521 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12550340 |
tcattgataattctctcaagcattaagcagtctccacctgctcccaatccatcaatgttgtcttcattgtagggttaaccttaatcacacctttttcatt |
12550241 |
T |
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| Q |
522 |
cagatttctcagacgccaacacagtgtttcctcctatg |
559 |
Q |
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| T |
12550240 |
cagatttctcagacgccaacacagtgtttcctcctatg |
12550203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 117 - 274
Target Start/End: Complemental strand, 9462358 - 9462194
Alignment:
| Q |
117 |
catacgtaccttctgcaaaggtt-ctgcatcaggttctacaattttaataaaatgaataaacctgcaagcaacattaataattgcaccacttgattattt |
215 |
Q |
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||||| ||||||||||| || || ||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||| | | |||||||||| |
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| T |
9462358 |
catacataccttctgcatagttttctgcatcaggtgctacagttttaattaaatgaataaacctgcaagcaacattaataattgttcaagttgattattt |
9462259 |
T |
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| Q |
216 |
gttaatcatctt------agacctcagaattagtcactctactttctggtatagatttttatggc |
274 |
Q |
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|||||||||||| ||| |||||||||| |||||||||||||||||||||| |||| |||| |
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| T |
9462258 |
gttaatcatcttagtttgagatctcagaattattcactctactttctggtatagacttttctggc |
9462194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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