View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18804_low_7 (Length: 436)
Name: NF18804_low_7
Description: NF18804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18804_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 11 - 202
Target Start/End: Original strand, 42141226 - 42141417
Alignment:
| Q |
11 |
acatcatccccaacttcaaattcaccgccgtcataaacaactttcttgtaatactgcaccttcgcaatctttccaccttttctcccagctcttgtaacaa |
110 |
Q |
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| T |
42141226 |
acatcatccccaacttcaaattcaccgccgtcataaacaactttcttgtaatactgcaccttcgcaatctttccaccttttctcccagcccttgtaacaa |
42141325 |
T |
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| Q |
111 |
ccattttctcaaccttaacctcgttcttcctctttctcttcttagtttccgattgatccggcgacgtcggagcgaacgaaaccttaacggaa |
202 |
Q |
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| T |
42141326 |
ccattttctcaaccttaacctcgttcttcctctttctcttcttagtttccgattgatccggcgatgtcggagcgaacgaaaccttaacggaa |
42141417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 266 - 420
Target Start/End: Original strand, 42141481 - 42141635
Alignment:
| Q |
266 |
acagatttcgatgaatctggagattttggagcaaatacaatttcatcggattcagcttttctacttctcttcctcagaaattgagcagaatcaatttcat |
365 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42141481 |
acagatttcgatgaatctggagattttggagcaaatacaatttcatcagattcagcttttctacttctcttcctcagaaattgagcagaatcaatttcat |
42141580 |
T |
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| Q |
366 |
tttctactttaattgaactgttatgagttacagctttttcttttcgagtgaaatc |
420 |
Q |
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| T |
42141581 |
tttctactttaattgaactgttatgagttacagctttttcttttcgagtgaaatc |
42141635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 126; Significance: 8e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 11 - 160
Target Start/End: Original strand, 23660194 - 23660343
Alignment:
| Q |
11 |
acatcatccccaacttcaaattcaccgccgtcataaacaactttcttgtaatactgcaccttcgcaatctttccaccttttctcccagctcttgtaacaa |
110 |
Q |
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||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
23660194 |
acatcattcccaacttcaaattcaccgccatcataaacaactttcttgtaatactgcaccttcgcaatctttccaccttttctcccagctcctgtaacaa |
23660293 |
T |
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| Q |
111 |
ccattttctcaaccttaacctcgttcttcctctttctcttcttagtttcc |
160 |
Q |
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|| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
23660294 |
ccgttttctcaacactaacctcgttcttcctctttctcttcttagtttcc |
23660343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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