View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18804_low_8 (Length: 435)
Name: NF18804_low_8
Description: NF18804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18804_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 17 - 413
Target Start/End: Original strand, 14155394 - 14155795
Alignment:
| Q |
17 |
catgtagaagatcattatttgtacaggtatattatcttaacattgcttcaaatattgtttaacattgctcat-----atgtaatcctatcttaatatata |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
14155394 |
catgcagaagatcattatttgtacaggtatattatcttaacattgcttcaaatattgtttaacattgctcatatcatatgtaatcctatcttaatatata |
14155493 |
T |
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| Q |
112 |
atattgtatttattgcagcataaattaccatcactcaggtgcaaataaaacttggtatggtgtgcctggttctgcaacctctcaatttgaaaagactgtc |
211 |
Q |
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| T |
14155494 |
atattgtatttattgcagcataaattaccatcactcaggtgcaaataaaacttggtatggtgtgcctggttctgcaacctctcaaattgaaaagactgtc |
14155593 |
T |
|
| Q |
212 |
ttggatcatgtttattgcaataaagtcttaatagaacatggagagaatggagcattccaatttcttgcacaaaaaacaaccatgttctctcctgatgtct |
311 |
Q |
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| T |
14155594 |
ttggatcatgtttattgcaacaaagtcttgatagaacatggagagaatggggcattccaatttcttgcacaaaaaacaaccatgttctctcctgatgtct |
14155693 |
T |
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| Q |
312 |
tgttagaacataatgtgccggtttacaaggcggtgcaaaagccaggagagtttgttatcacctttccatattcatatcatgctggatttagtcatggtaa |
411 |
Q |
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| T |
14155694 |
tgttagaacataatgtgccggtttacaaggcggtgcaaaagctaggagagtttgttatcacctttccaaattcatatcatgctggatttagtcatggtaa |
14155793 |
T |
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| Q |
412 |
ta |
413 |
Q |
| |
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| T |
14155794 |
ta |
14155795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 124 - 410
Target Start/End: Original strand, 14139851 - 14140137
Alignment:
| Q |
124 |
ttgcagcataaattaccatcactcaggtgcaaataaaacttggtatggtgtgcctggttctgcaacctctcaatttgaaaagactgtcttggatcatgtt |
223 |
Q |
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| T |
14139851 |
ttgcagcataaattatcatcactcaggtggaagtaaaacttggtacggcgtgcctagctctgcagcctctcaatttgaaaagactgtcttgaatcatgtg |
14139950 |
T |
|
| Q |
224 |
tattgcaataaagtcttaatagaacatggagagaatggagcattccaatttcttgcacaaaaaacaaccatgttctctcctgatgtcttgttagaacata |
323 |
Q |
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| T |
14139951 |
tattgcaaaaaaatcttagcagaacatggagagaatggtgcattccaatttcttgcacaaaaaacaaccatgttccctcctaatgtcttgttacaacatg |
14140050 |
T |
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| Q |
324 |
atgtgccggtttacaaggcggtgcaaaagccaggagagtttgttatcacctttccatattcatatcatgctggatttagtcatggta |
410 |
Q |
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| T |
14140051 |
atgtgccggtttacaaggcggtgcaaaagccaggagagtttgtcatcacctttcctaattcatatcatgctggatttagtcatggta |
14140137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 14139758 - 14139810
Alignment:
| Q |
17 |
catgtagaagatcattatttgtacaggtatattatcttaacattgcttcaaat |
69 |
Q |
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| T |
14139758 |
catgtagaagatcactatttgtacaggtatattatcttaacattgcttcaaat |
14139810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 169 - 410
Target Start/End: Complemental strand, 1038603 - 1038359
Alignment:
| Q |
169 |
tggtgtgcctggttctgcaacctctcaatttgaaaagactgtcttggatcatgtttattgcaataaagtcttaatagaacatggagagaatggagcattc |
268 |
Q |
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| T |
1038603 |
tggtgtgcctagttctgcagcctctcaatttgaaaagactgtcttggatcatgtgtattgcaacaaaatcttaatagaacatggagaaaatggtgcattc |
1038504 |
T |
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| Q |
269 |
caatttcttgcacaaaaaacaaccatgttctctcctgatgtcttgttagaacataatgtgccggtttacaa---ggcggtgcaaaagccaggagagtttg |
365 |
Q |
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| T |
1038503 |
caatttcttgcacaaaaaacaaccatgttctctcctgatgtcttgttagaacataatgtgccggtttacaaggtggtggtgcaaaagccaggagagtttg |
1038404 |
T |
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| Q |
366 |
ttatcacctttccatattcatatcatgctggatttagtcatggta |
410 |
Q |
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| T |
1038403 |
tcatcacctttccaaattcatatcatgccggatttagtcatggta |
1038359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 1038675 - 1038602
Alignment:
| Q |
17 |
catgtagaagatcattatttgtacaggtatatta-------tcttaacattgcttcaaatattgtttaacattg |
83 |
Q |
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|||||||||||||| ||||||||||||||| ||| |||||||||||||| |||||||||||||||||| |
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| T |
1038675 |
catgtagaagatcactatttgtacaggtatcttatctttattcttaacattgctttaaatattgtttaacattg |
1038602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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