View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18805_high_2 (Length: 225)

Name: NF18805_high_2
Description: NF18805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18805_high_2
NF18805_high_2
[»] chr5 (15 HSPs)
chr5 (17-120)||(7899365-7899468)
chr5 (59-200)||(6463970-6464109)
chr5 (72-199)||(6464220-6464345)
chr5 (159-207)||(7899491-7899539)
chr5 (79-178)||(20126583-20126681)
chr5 (150-213)||(7611301-7611364)
chr5 (72-200)||(36361077-36361202)
chr5 (150-198)||(13427919-13427967)
chr5 (72-213)||(36361292-36361431)
chr5 (130-200)||(41138455-41138524)
chr5 (161-195)||(42169317-42169351)
chr5 (151-193)||(43355838-43355880)
chr5 (150-199)||(7899605-7899654)
chr5 (79-120)||(20126489-20126530)
chr5 (131-192)||(33087677-33087738)
[»] chr3 (17 HSPs)
chr3 (79-195)||(51453592-51453706)
chr3 (72-200)||(53255168-53255294)
chr3 (131-199)||(53255063-53255131)
chr3 (150-192)||(1807198-1807240)
chr3 (148-199)||(37754948-37754999)
chr3 (131-192)||(33687705-33687766)
chr3 (131-192)||(33687866-33687927)
chr3 (130-199)||(51453768-51453836)
chr3 (149-188)||(1807560-1807599)
chr3 (130-192)||(33381610-33381671)
chr3 (130-200)||(42686804-42686874)
chr3 (145-190)||(50420777-50420822)
chr3 (131-179)||(11413346-11413393)
chr3 (59-103)||(51315525-51315569)
chr3 (131-178)||(941565-941611)
chr3 (72-102)||(32831468-32831498)
chr3 (59-115)||(44624857-44624913)
[»] chr2 (13 HSPs)
chr2 (72-199)||(17850378-17850504)
chr2 (71-200)||(14815741-14815867)
chr2 (131-199)||(8740334-8740402)
chr2 (131-187)||(29370817-29370872)
chr2 (150-200)||(9780831-9780881)
chr2 (72-210)||(14815928-14816067)
chr2 (151-192)||(35500242-35500283)
chr2 (59-102)||(37431574-37431617)
chr2 (150-200)||(4423540-4423590)
chr2 (58-118)||(9780561-9780620)
chr2 (72-120)||(9780907-9780955)
chr2 (153-185)||(17850259-17850291)
chr2 (150-210)||(31227022-31227082)
[»] chr7 (20 HSPs)
chr7 (131-200)||(43077946-43078015)
chr7 (131-195)||(9143065-9143129)
chr7 (131-210)||(43091914-43091993)
chr7 (72-200)||(10691342-10691468)
chr7 (72-200)||(10691534-10691659)
chr7 (150-199)||(29933308-29933357)
chr7 (150-193)||(7873629-7873672)
chr7 (134-192)||(327331-327388)
chr7 (131-192)||(35828450-35828511)
chr7 (149-210)||(43657732-43657793)
chr7 (72-120)||(7873553-7873601)
chr7 (150-190)||(9477345-9477385)
chr7 (131-195)||(43091767-43091830)
chr7 (150-201)||(47030392-47030443)
chr7 (72-193)||(46199097-46199216)
chr7 (134-195)||(47030525-47030586)
chr7 (72-120)||(6385771-6385818)
chr7 (132-192)||(9500053-9500113)
chr7 (151-195)||(26787817-26787861)
chr7 (146-198)||(30283611-30283663)
[»] chr4 (21 HSPs)
chr4 (72-200)||(30064046-30064171)
chr4 (80-199)||(30064242-30064362)
chr4 (134-210)||(5547884-5547960)
chr4 (72-120)||(53831196-53831244)
chr4 (75-193)||(33508934-33509050)
chr4 (150-200)||(47742491-47742541)
chr4 (150-195)||(831299-831344)
chr4 (132-200)||(831159-831227)
chr4 (131-170)||(11787258-11787297)
chr4 (131-170)||(11799425-11799464)
chr4 (145-192)||(12689989-12690036)
chr4 (81-194)||(33641904-33642014)
chr4 (131-200)||(13388451-13388520)
chr4 (72-199)||(33642111-33642237)
chr4 (72-119)||(39907306-39907353)
chr4 (79-200)||(13388211-13388330)
chr4 (151-193)||(29344433-29344475)
chr4 (141-190)||(54953832-54953881)
chr4 (72-120)||(26858388-26858436)
chr4 (131-199)||(47742334-47742402)
chr4 (151-207)||(49000712-49000768)
[»] chr1 (20 HSPs)
chr1 (131-192)||(1406412-1406473)
chr1 (131-210)||(3814860-3814938)
chr1 (145-192)||(37008330-37008377)
chr1 (79-200)||(45719389-45719508)
chr1 (79-120)||(6129588-6129629)
chr1 (59-195)||(37008437-37008570)
chr1 (148-200)||(6129365-6129417)
chr1 (134-210)||(13574921-13574997)
chr1 (158-201)||(367013-367056)
chr1 (82-195)||(7196730-7196841)
chr1 (74-120)||(15788456-15788502)
chr1 (150-195)||(46895686-46895731)
chr1 (79-118)||(45719673-45719712)
chr1 (150-205)||(51690341-51690396)
chr1 (131-192)||(13575055-13575115)
chr1 (150-199)||(29816318-29816367)
chr1 (151-192)||(39384358-39384399)
chr1 (150-179)||(40345398-40345427)
chr1 (72-120)||(40876967-40877015)
chr1 (72-120)||(43117299-43117347)
[»] chr8 (16 HSPs)
chr8 (150-199)||(1003578-1003627)
chr8 (72-213)||(35795463-35795601)
chr8 (72-200)||(45163605-45163730)
chr8 (150-198)||(23475744-23475792)
chr8 (131-199)||(45163480-45163548)
chr8 (149-210)||(17512346-17512407)
chr8 (148-199)||(1003691-1003742)
chr8 (72-200)||(17512141-17512267)
chr8 (72-120)||(14170466-14170514)
chr8 (146-192)||(755987-756032)
chr8 (131-185)||(29219177-29219231)
chr8 (61-119)||(45522171-45522228)
chr8 (150-195)||(9499108-9499153)
chr8 (57-90)||(11288981-11289014)
chr8 (134-207)||(14507840-14507912)
chr8 (134-171)||(18896531-18896568)
[»] chr6 (7 HSPs)
chr6 (145-187)||(1614957-1614999)
chr6 (61-107)||(30370056-30370102)
chr6 (131-195)||(30369883-30369947)
chr6 (131-174)||(12798962-12799005)
chr6 (150-192)||(2539159-2539201)
chr6 (132-185)||(12798827-12798879)
chr6 (152-192)||(2539104-2539144)
[»] scaffold0017 (1 HSPs)
scaffold0017 (146-192)||(27832-27877)
[»] scaffold0400 (1 HSPs)
scaffold0400 (59-100)||(8568-8609)
[»] scaffold0365 (1 HSPs)
scaffold0365 (59-100)||(9211-9252)
[»] scaffold0182 (3 HSPs)
scaffold0182 (151-204)||(21285-21337)
scaffold0182 (72-120)||(21209-21257)
scaffold0182 (148-200)||(21407-21459)
[»] scaffold0468 (1 HSPs)
scaffold0468 (72-120)||(10395-10443)


Alignment Details
Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 7899365 - 7899468
Alignment:
Q  17 caactgtaggaacaaaggatgcattctaataagttttaacttggcttaatagcagttttggtcccctaactaaataaactacaaaactgccttctaagta 116  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||| ||||||||||| ||||||||||||| ||| ||||||||    
T  7899365 caactgtaggaacaaaggatgcattctaataagtttcaatttggcttaatagtagttttggccccctaactaagtaaactacaaaaccgccctctaagta 7899464  T
Q  117 ttga 120  Q
    ||||    
T  7899465 ttga 7899468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 59 - 200
Target Start/End: Original strand, 6463970 - 6464109
Alignment:
Q  59 ggcttaatagcagttttggtcccctaactaaataaactacaaaactgccttctaagtattgannnnnnnnnacagttttggtccctcaggtcaattttga 158  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||  |||||||||||          ||||||||  ||| | || |||||||||    
T  6463970 ggcttaatagcagttttggccccctaactaaataaactacaaaaccgccccctaagtattgacttttttg--cagttttgtcccccctggccaattttga 6464067  T
Q  159 ccaagtcaatgcacacgtggacgccacatgtgtatttattta 200  Q
    |||||||||||||||| |||||||||  ||||||||||||||    
T  6464068 ccaagtcaatgcacacatggacgccatgtgtgtatttattta 6464109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 6464345 - 6464220
Alignment:
Q  72 ttttggtcccctaactaaataaactacaaaactgccttctaagtattgannnnnnnnnacagttttggtccctcaggtcaattttgaccaagtcaatgca 171  Q
    |||||| ||||||||||||||||||||||||| |||  |||||||||||          ||||||||| |||||||| |||||||||||||||||| ||     
T  6464345 ttttggccccctaactaaataaactacaaaaccgccccctaagtattgacttttttg--cagttttggcccctcaggccaattttgaccaagtcaaagct 6464248  T
Q  172 cacgtggacgccacatgtgtatttattt 199  Q
     ||||||||||||| |||||||||||||    
T  6464247 gacgtggacgccacgtgtgtatttattt 6464220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 7899491 - 7899539
Alignment:
Q  159 ccaagtcaatgcacacgtggacgccacatgtgtatttatttaaattttt 207  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  7899491 ccaagtcaatgcacacgtggacgccacgtgtgtatttttttaaattttt 7899539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 178
Target Start/End: Complemental strand, 20126681 - 20126583
Alignment:
Q  79 cccctaactaaataaactacaaaactgccttctaagtattgannnnnnnnnacagttttggtccctcaggtcaattttgaccaagtcaatgcacacgtgg 178  Q
    ||||||||||||||||||||||||| |||  |||||||||||          ||||||||| |||||||  |||||||||||||||||||||||||||||    
T  20126681 cccctaactaaataaactacaaaaccgccccctaagtattgattttttttg-cagttttggcccctcagaccaattttgaccaagtcaatgcacacgtgg 20126583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 150 - 213
Target Start/End: Complemental strand, 7611364 - 7611301
Alignment:
Q  150 caattttgaccaagtcaatgcacacgtggacgccacatgtgtatttatttaaatttttaatatt 213  Q
    |||||||||| |||||||||||||| |||||||||| ||||||||||||||  |||| ||||||    
T  7611364 caattttgacaaagtcaatgcacacatggacgccacgtgtgtatttatttattttttaaatatt 7611301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 200
Target Start/End: Original strand, 36361077 - 36361202
Alignment:
Q  72 ttttggtcccctaactaaataaactacaaaactgccttctaagtattgannnnnnnnnacagttttggtccctcaggtcaattttgaccaagtcaatgca 171  Q
    ||||| ||||||||||||||||| |||||||| |||  |||||||||||          ||||||||| ||| || | |||||||||||||||||| ||     
T  36361077 ttttgatcccctaactaaataaagtacaaaaccgccccctaagtattgacttttttg--cagttttggcccc-catgccaattttgaccaagtcaaagct 36361173  T
Q  172 cacgtggacgccacatgtgtatttattta 200  Q
     ||||||||||||||| ||||||||||||    
T  36361174 gacgtggacgccacatatgtatttattta 36361202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 198
Target Start/End: Original strand, 13427919 - 13427967
Alignment:
Q  150 caattttgaccaagtcaatgcacacgtggacgccacatgtgtatttatt 198  Q
    ||||||||||||| |||||||||||||||||||||| |||||| |||||    
T  13427919 caattttgaccaactcaatgcacacgtggacgccacgtgtgtaattatt 13427967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 213
Target Start/End: Complemental strand, 36361431 - 36361292
Alignment:
Q  72 ttttggtcccctaactaaataaactacaaaactgccttctaagtattgannnnnnnnnacagttttggtccctcaggtcaattttgaccaagtcaatgca 171  Q
    |||||| ||| ||||||||||||||||||||| ||||  ||||||||||          ||||||||| ||| |||   ||||||||| ||| |||||||    
T  36361431 ttttggccccttaactaaataaactacaaaaccgcctcttaagtattgacttttttg--cagttttggccccccagacgaattttgacaaagccaatgca 36361334  T
Q  172 cacgtggacgccacatgtgtatttatttaaatttttaatatt 213  Q
    ||| || ||||||| ||||||||||||||  |||| ||||||    
T  36361333 cacttgaacgccacttgtgtatttatttattttttaaatatt 36361292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 41138455 - 41138524
Alignment:
Q  130 acagttttggtccctcaggtcaattttgaccaagtcaatgcacacgtggacgccacatgtgtatttattta 200  Q
    |||||||||| ||| ||||||||||||||| |||||||||||||| | |  ||||| ||||||||||||||    
T  41138455 acagttttggcccc-caggtcaattttgacaaagtcaatgcacacataggtgccacgtgtgtatttattta 41138524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 195
Target Start/End: Complemental strand, 42169351 - 42169317
Alignment:
Q  161 aagtcaatgcacacgtggacgccacatgtgtattt 195  Q
    ||||||||||||||||||| |||||||||||||||    
T  42169351 aagtcaatgcacacgtggatgccacatgtgtattt 42169317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 193
Target Start/End: Original strand, 43355838 - 43355880
Alignment:
Q  151 aattttgaccaagtcaatgcacacgtggacgccacatgtgtat 193  Q
    |||||||||||||||||||||||| |||||||||  |||||||    
T  43355838 aattttgaccaagtcaatgcacacatggacgccaagtgtgtat 43355880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 7899654 - 7899605
Alignment:
Q  150 caattttgaccaagtcaatgcacacgtggacgccacatgtgtatttattt 199  Q
    |||||||||||||||||| ||  || |||||||||| |||||||||||||    
T  7899654 caattttgaccaagtcaaagctgacttggacgccacgtgtgtatttattt 7899605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 120
Target Start/End: Original strand, 20126489 - 20126530
Alignment:
Q  79 cccctaactaaataaactacaaaactgccttctaagtattga 120  Q
    ||||||||||||||||||||||||| |||  |||||||||||    
T  20126489 cccctaactaaataaactacaaaaccgccccctaagtattga 20126530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 192
Target Start/End: Original strand, 33087677 - 33087738
Alignment:
Q  131 cagttttggtccctcaggtcaattttgaccaagtcaatgcacacgtggacgccacatgtgta 192  Q
    ||||||||| ||| | | ||||||||||| ||||||||||  ||||||||||||| ||||||    
T  33087677 cagttttggccccccggatcaattttgacaaagtcaatgctaacgtggacgccacgtgtgta 33087738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 79 - 195
Target Start/End: Original strand, 51453592 - 51453706
Alignment:
Q  79 cccctaactaaataaactacaaaactgccttctaagtattgannnnnnnnnacagttttggtccctcaggtcaattttgaccaagtcaatgcacacgtgg 178  Q
    ||||||||||||||||||||||||| |||| |||||||||||          ||||||||| | | ||||||||||||||| ||||||||||||||||||    
T  51453592 cccctaactaaataaactacaaaaccgcctcctaagtattgacttttttg--cagttttggcctcccaggtcaattttgacaaagtcaatgcacacgtgg 51453689  T
Q  179 acgccacatgtgtattt 195  Q
    ||||||| |||||||||    
T  51453690 acgccacgtgtgtattt 51453706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 200
Target Start/End: Complemental strand, 53255294 - 53255168
Alignment:
Q  72 ttttggtcccctaactaaataaactacaaaactgccttctaagtattgannnnnnnnnacagttttggtccctcaggtcaattttgaccaagtcaatgca 171  Q
    |||||| ||||||||||||||||||||||||| ||| ||||||||||||          ||||||||| |||   ||  |||||||||||||||| ||||    
T  53255294 ttttggccccctaactaaataaactacaaaaccgccctctaagtattgacttttttg--cagttttggcccccacggcaaattttgaccaagtcattgca 53255197  T
Q  172 cacgtggacgccacatgtgtatttattta 200  Q
    ||| |||||||||| ||||||||||||||    
T  53255196 cacctggacgccacgtgtgtatttattta 53255168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 131 - 199
Target Start/End: Original strand, 53255063 - 53255131
Alignment:
Q  131 cagttttggtccctcaggtcaattttgaccaagtcaatgcacacgtggacgccacatgtgtatttattt 199  Q
    |||||||||  ||||||| |||||||||||||||||| ||  |||||||||||||||||||||||||||    
T  53255063 cagttttggctcctcaggccaattttgaccaagtcaaagctgacgtggacgccacatgtgtatttattt 53255131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 192
Target Start/End: Original strand, 1807198 - 1807240
Alignment:
Q  150 caattttgaccaagtcaatgcacacgtggacgccacatgtgta 192  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  1807198 caattttgaccaagtcaatgcacacgtggacgccacatgtgta 1807240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 148 - 199
Target Start/End: Original strand, 37754948 - 37754999
Alignment:
Q  148 gtcaattttgaccaagtcaatgcacacgtggacgccacatgtgtatttattt 199  Q
    |||||||||||  |||||||||||||| ||||||||||||||||||||||||    
T  37754948 gtcaattttgataaagtcaatgcacacatggacgccacatgtgtatttattt 37754999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 192
Target Start/End: Original strand, 33687705 - 33687766
Alignment:
Q  131 cagttttggtccctcaggtcaattttgaccaagtcaatgcacacgtggacgccacatgtgta 192  Q
    ||||||||||||| ||| |||||||||||||||||||||   ||||| ||||||||||||||    
T  33687705 cagttttggtcccccagatcaattttgaccaagtcaatgttgacgtgaacgccacatgtgta 33687766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 192
Target Start/End: Complemental strand, 33687927 - 33687866
Alignment:
Q  131 cagttttggtccctcaggtcaattttgaccaagtcaatgcacacgtggacgccacatgtgta 192  Q
    ||||||||||||| |||  ||||||||||||| |||||||  ||||||||||||||||||||    
T  33687927 cagttttggtcccccagaccaattttgaccaaatcaatgctgacgtggacgccacatgtgta 33687866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 199
Target Start/End: Complemental strand, 51453836 - 51453768
Alignment:
Q  130 acagttttggtccctcaggtcaattttgaccaagtcaatgcacacgtggacgccacatgtgtatttattt 199  Q
    |||||||||  ||| ||||||||||| ||||||||||| ||  |||||||||||||||||||||||||||    
T  51453836 acagttttgaccccccaggtcaattt-gaccaagtcaaagctgacgtggacgccacatgtgtatttattt 51453768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 188
Target Start/End: Complemental strand, 1807599 - 1807560
Alignment:
Q  149 tcaattttgaccaagtcaatgcacacgtggacgccacatg 188  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  1807599 tcaattttgaccaagtcaatacacacgtggacgccacatg 1807560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 192
Target Start/End: Original strand, 33381610 - 33381671
Alignment:
Q  130 acagttttggtccctcaggtcaattttgaccaagtcaatgcacacgtggacgccacatgtgta 192  Q
    |||||||||| |||||||||||||||| | |||||||||||  ||||||||| ||||||||||    
T  33381610 acagttttgg-ccctcaggtcaattttaatcaagtcaatgctgacgtggacggcacatgtgta 33381671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 42686874 - 42686804
Alignment:
Q  130 acagttttggtccctcaggtcaattttgaccaagtcaatgcacacgtggacgccacatgtgtatttattta 200  Q
    |||||||||| |||| ||  ||||||||||   |||||  |||||||||||||||||||||||||||||||    
T  42686874 acagttttggccccttagaccaattttgacttggtcaacacacacgtggacgccacatgtgtatttattta 42686804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 190
Target Start/End: Complemental strand, 50420822 - 50420777
Alignment:
Q  145 caggtcaattttgaccaagtcaatgcacacgtggacgccacatgtg 190  Q
    |||||||||||||||||| |||||||  ||||||||||||||||||    
T  50420822 caggtcaattttgaccaaatcaatgctgacgtggacgccacatgtg 50420777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 11413346 - 11413393
Alignment:
Q  131 cagttttggtccctcaggtcaattttgaccaagtcaatgcacacgtgga 179  Q
    ||||||||| ||||||| ||||||||||||||||||||||| |||||||    
T  11413346 cagttttgg-ccctcagatcaattttgaccaagtcaatgcatacgtgga 11413393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 51315525 - 51315569
Alignment:
Q  59 ggcttaatagcagttttggtcccctaactaaataaactacaaaac 103  Q
    ||||||||||||||||||| |||||||| ||||||| ||||||||    
T  51315525 ggcttaatagcagttttggccccctaacaaaataaattacaaaac 51315569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 178
Target Start/End: Complemental strand, 941611 - 941565
Alignment:
Q  131 cagttttggtccctcaggtcaattttgaccaagtcaatgcacacgtgg 178  Q
    |||||||||||| ||||||||||||||||  |||||||||||||||||    
T  941611 cagttttggtcc-tcaggtcaattttgactcagtcaatgcacacgtgg 941565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 102
Target Start/End: Complemental strand, 32831498 - 32831468
Alignment:
Q  72 ttttggtcccctaactaaataaactacaaaa 102  Q
    |||||||||||||||||||||||||||||||    
T  32831498 ttttggtcccctaactaaataaactacaaaa 32831468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 44624913 - 44624857
Alignment:
Q  59 ggcttaatagcagttttggtcccctaactaaataaactacaaaactgccttctaagt 115  Q
    ||||||||||||||||| | |||||||  ||| |||||||||||| ||| |||||||    
T  44624913 ggcttaatagcagttttcgccccctaagaaaaaaaactacaaaaccgccatctaagt 44624857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 17850504 - 17850378
Alignment:
Q  72 ttttggtcccctaactaaataaactacaaaactgccttctaagtattgannnnnnnnnacagttttggtccctcaggtcaattttgaccaagtcaatgca 171  Q
    |||||| | |||||||||||||||||||||| ||||  | |||||||||         |||||||||| ||| |||| ||||||||||||||||||||||    
T  17850504 ttttggcctcctaactaaataaactacaaaattgcccccaaagtattgacttttttt-acagttttggccccccagggcaattttgaccaagtcaatgca 17850406  T
Q  172 cacgtggacgccacatgtgtatttattt 199  Q
    || ||||||||||| ||||||| |||||    
T  17850405 catgtggacgccacgtgtgtatgtattt 17850378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 71 - 200
Target Start/End: Original strand, 14815741 - 14815867
Alignment:
Q  71 gttttggtcccctaactaaataaactacaaaactgccttctaagtattgannnnnnnnnacagttttggtccctcaggtcaattttgaccaagtcaatgc 170  Q
    ||||||||||| ||||||||||||||||||||| |||  |||||||||||          ||| ||||| ||| || | |||||||||||||||||||||    
T  14815741 gttttggtcccttaactaaataaactacaaaaccgccccctaagtattgactttattg--cagctttggcccc-catgccaattttgaccaagtcaatgc 14815837  T
Q  171 acacgtggacgccacatgtgtatttattta 200  Q
    ||| ||||||||||| ||||||||||||||    
T  14815838 acatgtggacgccacgtgtgtatttattta 14815867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 199
Target Start/End: Complemental strand, 8740402 - 8740334
Alignment:
Q  131 cagttttggtccctcaggtcaattttgaccaagtcaatgcacacgtggacgccacatgtgtatttattt 199  Q
    ||||||||| |||  || ||||||||||| |||||||||||||| |||||||||| |||||||||||||    
T  8740402 cagttttggccccctagatcaattttgacaaagtcaatgcacacatggacgccacctgtgtatttattt 8740334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 29370817 - 29370872
Alignment:
Q  131 cagttttggtccctcaggtcaattttgaccaagtcaatgcacacgtggacgccacat 187  Q
    ||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||    
T  29370817 cagttttggcccc-caagtcaattttgaccaagtcaatgcacacgtggacgccacat 29370872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 200
Target Start/End: Complemental strand, 9780881 - 9780831
Alignment:
Q  150 caattttgaccaagtcaatgcacacgtggacgccacatgtgtatttattta 200  Q
    |||||||||| |||||||||||||| |||||||||| ||||||||||||||    
T  9780881 caattttgacaaagtcaatgcacacatggacgccacttgtgtatttattta 9780831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 210
Target Start/End: Complemental strand, 14816067 - 14815928
Alignment:
Q  72 ttttggtcccctaactaaataaactacaaaactgccttctaagtattgannnnnnnnna--cagttttggtccctcaggtcaattttgaccaagtcaatg 169  Q
    |||||| ||||||||||||||||||||||||| |||  |||||||||||            ||||||||| ||| ||||||||||||||||||||||| |    
T  14816067 ttttggccccctaactaaataaactacaaaaccgccccctaagtattgatttttttttttgcagttttggcccc-caggtcaattttgaccaagtcaaag 14815969  T
Q  170 cacacgtggacgccacatgtgtatttatttaaatttttaat 210  Q
    |  ||||||| ||||| ||| ||||||||| | ||||||||    
T  14815968 cttacgtggatgccacgtgtatatttattttattttttaat 14815928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 192
Target Start/End: Complemental strand, 35500283 - 35500242
Alignment:
Q  151 aattttgaccaagtcaatgcacacgtggacgccacatgtgta 192  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  35500283 aattttgaccaagtcaatgcacacgtggatgccacatgtgta 35500242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 37431574 - 37431617
Alignment:
Q  59 ggcttaatagcagttttggtcccctaactaaataaactacaaaa 102  Q
    |||||||||||||||||||||||||||  ||| |||||||||||    
T  37431574 ggcttaatagcagttttggtcccctaaggaaaaaaactacaaaa 37431617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 200
Target Start/End: Original strand, 4423540 - 4423590
Alignment:
Q  150 caattttgaccaagtcaatgcacacgtggacgccacatgtgtatttattta 200  Q
    |||||||||| ||||||||||| || || ||||||| ||||||||||||||    
T  4423540 caattttgacaaagtcaatgcagacatgaacgccacgtgtgtatttattta 4423590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 118
Target Start/End: Original strand, 9780561 - 9780620
Alignment:
Q  58 tggcttaatagcagttttggtcccctaactaaataaactacaaaactgccttctaagtatt 118  Q
    ||||||| | |||||||||||||||||| |||||||| |||||||| |||  |||||||||    
T  9780561 tggcttagttgcagttttggtcccctaattaaataaa-tacaaaaccgcccactaagtatt 9780620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 9780955 - 9780907
Alignment:
Q  72 ttttggtcccctaactaaataaactacaaaactgccttctaagtattga 120  Q
    ||||| ||| |||||||||||||||||||||| |||  |||||||||||    
T  9780955 ttttgatcctctaactaaataaactacaaaaccgccccctaagtattga 9780907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 17850259 - 17850291
Alignment:
Q  153 ttttgaccaagtcaatgcacacgtggacgccac 185  Q
    |||| ||||||||||||||||||||||||||||    
T  17850259 ttttaaccaagtcaatgcacacgtggacgccac 17850291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 210
Target Start/End: Complemental strand, 31227082 - 31227022
Alignment:
Q  150 caattttgaccaagtcaatgcacacgtggacgccacatgtgtatttatttaaatttttaat 210  Q
    ||||||| |||||| |||||   ||||||||||||||||||||||| ||||  ||||||||    
T  31227082 caatttttaccaagccaatgatgacgtggacgccacatgtgtatttttttatttttttaat 31227022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 131 - 200
Target Start/End: Complemental strand, 43078015 - 43077946
Alignment:
Q  131 cagttttggtccctcaggtcaattttgaccaagtcaatgcacacgtggacgccacatgtgtatttattta 200  Q
    ||||||||| ||| |||  |||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  43078015 cagttttggccccccagaccaattttgaccaagtcaatgcacacgtggatgccacgtgtgtatttattta 43077946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 195
Target Start/End: Original strand, 9143065 - 9143129
Alignment:
Q  131 cagttttggtccctcaggtcaattttgaccaagtcaatgcacacgtggacgccacatgtgtattt 195  Q
    ||||||||| ||| || ||||||||||||| ||||||| |||||||||||||||| |||||||||    
T  9143065 cagttttggccccccaagtcaattttgacctagtcaatacacacgtggacgccacgtgtgtattt 9143129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 131 - 210
Target Start/End: Complemental strand, 43091993 - 43091914
Alignment:
Q  131 cagttttggtccctcaggtcaattttgaccaagtcaatgcacacgtggacgccacatgtgtatttatttaaatttttaat 210  Q
    ||||||||||| | |||  ||||||||||||||||||||||||| || ||| ||| ||||||||||||||  ||||||||    
T  43091993 cagttttggtcacccagaccaattttgaccaagtcaatgcacacatgaacgtcacgtgtgtatttatttatttttttaat 43091914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 200
Target Start/End: Original strand, 10691342 - 10691468
Alignment:
Q  72 ttttggtcccctaactaaataaactacaaaactgccttctaagtattgannnnnnnnnacagttttggtccctcaggtcaattttgaccaagtcaatgca 171  Q
    |||||| |||||||||||||||||||||||||||||   ||||||||||          ||| ||||| ||| |||  |||||||||| |||||||||||    
T  10691342 ttttggccccctaactaaataaactacaaaactgccccttaagtattgacttttttg--cagctttggccccccagaccaattttgacaaagtcaatgca 10691439  T
Q  172 cacgtggacgccacatgtgtatttattta 200  Q
    ||| |||| ||||| ||||||||| ||||    
T  10691440 cacatggatgccacgtgtgtattttttta 10691468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 200
Target Start/End: Complemental strand, 10691659 - 10691534
Alignment:
Q  72 ttttggtcccctaactaaataaactacaaaactgccttctaagtattgannnnnnnnnacagttttggtccctcaggtcaattttgaccaagtcaatgca 171  Q
    |||||| ||||||||||||||||||||||||| |||  |||||||||||          ||||||||| ||| || | |||||||||||||||||| ||     
T  10691659 ttttggccccctaactaaataaactacaaaaccgccccctaagtattgacttttttg--cagttttgg-cccccatgccaattttgaccaagtcaaagct 10691563  T
Q  172 cacgtggacgccacatgtgtatttattta 200  Q
     |||||||| |||||| ||||||||||||    
T  10691562 gacgtggacaccacatatgtatttattta 10691534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 199
Target Start/End: Original strand, 29933308 - 29933357
Alignment:
Q  150 caattttgaccaagtcaatgcacacgtggacgccacatgtgtatttattt 199  Q
    ||||||||| ||||||||||||||| |||||||||| |||||||||||||    
T  29933308 caattttgatcaagtcaatgcacacatggacgccacgtgtgtatttattt 29933357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 193
Target Start/End: Original strand, 7873629 - 7873672
Alignment:
Q  150 caattttgaccaagtcaatgcacacgtggacgccacatgtgtat 193  Q
    ||||||||||||||||||||||||| |||||||||| |||||||    
T  7873629 caattttgaccaagtcaatgcacacatggacgccacgtgtgtat 7873672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 134 - 192
Target Start/End: Complemental strand, 327388 - 327331
Alignment:
Q  134 ttttggtccctcaggtcaattttgaccaagtcaatgcacacgtggacgccacatgtgta 192  Q
    |||||| |||| |||||||||||||||||||||||||  |||||| |||||||||||||    
T  327388 ttttggccccttaggtcaattttgaccaagtcaatgctgacgtgg-cgccacatgtgta 327331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 192
Target Start/End: Original strand, 35828450 - 35828511
Alignment:
Q  131 cagttttggtccctcaggtcaattttgaccaagtcaatgcacacgtggacgccacatgtgta 192  Q
    ||||||||| |||||||  ||||||| |||||||||||||  ||||||||| ||||||||||    
T  35828450 cagttttggcccctcagaccaattttcaccaagtcaatgctgacgtggacgtcacatgtgta 35828511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 210
Target Start/End: Complemental strand, 43657793 - 43657732
Alignment:
Q  149 tcaattttgaccaagtcaatgcacacgtggacgccacatgtgtatttatttaaatttttaat 210  Q
    |||||||||||| |||||||||  |||||||||||||||||||| || ||| | ||||||||    
T  43657793 tcaattttgaccgagtcaatgctgacgtggacgccacatgtgtaatttttttattttttaat 43657732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 7873553 - 7873601
Alignment:
Q  72 ttttggtcccctaactaaataaactacaaaactgccttctaagtattga 120  Q
    |||||| ||||||||||||||||||||||||| |||  |||||||||||    
T  7873553 ttttggccccctaactaaataaactacaaaaccgccccctaagtattga 7873601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 190
Target Start/End: Complemental strand, 9477385 - 9477345
Alignment:
Q  150 caattttgaccaagtcaatgcacacgtggacgccacatgtg 190  Q
    |||||||||||||||||||||||| ||||||||||| ||||    
T  9477385 caattttgaccaagtcaatgcacatgtggacgccacgtgtg 9477345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 195
Target Start/End: Original strand, 43091767 - 43091830
Alignment:
Q  131 cagttttggtccctcaggtcaattttgaccaagtcaatgcacacgtggacgccacatgtgtattt 195  Q
    ||||||||||||| || |||||||||||||||||||| ||  || |||||||||||| |||||||    
T  43091767 cagttttggtccc-caagtcaattttgaccaagtcaaagctgacatggacgccacatatgtattt 43091830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 47030392 - 47030443
Alignment:
Q  150 caattttgaccaagtcaatgcacacgtggacgccacatgtgtatttatttaa 201  Q
    |||||||||||||||||||||  |||||| ||||||||||||| || |||||    
T  47030392 caattttgaccaagtcaatgctgacgtggccgccacatgtgtaattttttaa 47030443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 193
Target Start/End: Original strand, 46199097 - 46199216
Alignment:
Q  72 ttttggtcccctaactaaataaactacaaaactgccttctaagtattgannnnnnnnnacagttttggtccctcaggtcaattttgaccaagtcaatgca 171  Q
    |||||||||||||| |||||||||||||||||  ||  |||||||||||          ||||||||| ||||||    ||||| |||||||| ||||||    
T  46199097 ttttggtcccctaaataaataaactacaaaaccaccccctaagtattgatttttttg--cagttttggcccctcaaacaaatttggaccaagttaatgca 46199194  T
Q  172 cacgtggacgccacatgtgtat 193  Q
    ||||||||| |||| |||||||    
T  46199195 cacgtggacaccacgtgtgtat 46199216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 195
Target Start/End: Complemental strand, 47030586 - 47030525
Alignment:
Q  134 ttttggtccctcaggtcaattttgaccaagtcaatgcacacgtggacgccacatgtgtattt 195  Q
    ||||||||||| |||||||||||||| ||||||||||  | |||| | | ||||||||||||    
T  47030586 ttttggtccctaaggtcaattttgacaaagtcaatgctgatgtggccactacatgtgtattt 47030525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 6385818 - 6385771
Alignment:
Q  72 ttttggtcccctaactaaataaactacaaaactgccttctaagtattga 120  Q
    |||| ||| ||||||||||||||||||||||||| | ||||||||||||    
T  6385818 ttttagtctcctaactaaataaactacaaaactgtc-tctaagtattga 6385771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 9500113 - 9500053
Alignment:
Q  132 agttttggtccctcaggtcaattttgaccaagtcaatgcacacgtggacgccacatgtgta 192  Q
    |||||||| |||  ||| ||||||||||   ||||| ||||||||||||||||||||||||    
T  9500113 agttttggcccccaaggccaattttgacttggtcaacgcacacgtggacgccacatgtgta 9500053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 195
Target Start/End: Complemental strand, 26787861 - 26787817
Alignment:
Q  151 aattttgaccaagtcaatgcacacgtggacgccacatgtgtattt 195  Q
    ||||||||| || |||||||||||||||||||||| |||| ||||    
T  26787861 aattttgacaaaatcaatgcacacgtggacgccacgtgtgaattt 26787817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 198
Target Start/End: Complemental strand, 30283663 - 30283611
Alignment:
Q  146 aggtcaattttgaccaagtcaatgcacacgtggacgccacatgtgtatttatt 198  Q
    |||||||||||||| |||| |||||||||||||| | ||| |||||| |||||    
T  30283663 aggtcaattttgacaaagttaatgcacacgtggaagtcacgtgtgtaattatt 30283611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 200
Target Start/End: Original strand, 30064046 - 30064171
Alignment:
Q  72 ttttggtcccctaactaaataaactacaaaactgccttctaagtattgannnnnnnnnacagttttggtccctcaggtcaattttgaccaagtcaatgca 171  Q
    |||||||||||||||||| ||||||||||||| |||   ||||||||||          ||||||||| ||||| || ||||||||||||||||||||||    
T  30064046 ttttggtcccctaactaagtaaactacaaaaccgccccttaagtattgacttttttg--cagttttgg-ccctctggccaattttgaccaagtcaatgca 30064142  T
Q  172 cacgtggacgccacatgtgtatttattta 200  Q
    ||| |||||| ||| ||||||||||||||    
T  30064143 cacatggacgtcacgtgtgtatttattta 30064171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 199
Target Start/End: Complemental strand, 30064362 - 30064242
Alignment:
Q  80 ccctaactaaataaactacaaaactgccttctaagtattgannnnnnnnna-cagttttggtccctcaggtcaattttgaccaagtcaatgcacacgtgg 178  Q
    |||||||||||||||||||||||| | | ||||||||||||           ||||||||| ||||||||||||||||||||||||||| |   ||||||    
T  30064362 ccctaactaaataaactacaaaaccgtcatctaagtattgactttttttttgcagttttggcccctcaggtcaattttgaccaagtcaaagttgacgtgg 30064263  T
Q  179 acgccacatgtgtatttattt 199  Q
    ||||||| |||||||||||||    
T  30064262 acgccacgtgtgtatttattt 30064242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 134 - 210
Target Start/End: Complemental strand, 5547960 - 5547884
Alignment:
Q  134 ttttggtccctcaggtcaattttgaccaagtcaatgcacacgtggacgccacatgtgtatttatttaaatttttaat 210  Q
    |||||||||  ||| |||||||| |||||||||||||||| ||||| ||||||||||||||||||||  ||||||||    
T  5547960 ttttggtcctccagatcaattttaaccaagtcaatgcacatgtggatgccacatgtgtatttatttatttttttaat 5547884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 53831196 - 53831244
Alignment:
Q  72 ttttggtcccctaactaaataaactacaaaactgccttctaagtattga 120  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  53831196 ttttggtcccctaactaaataaactacaaaactgcctcctaagtattga 53831244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 75 - 193
Target Start/End: Original strand, 33508934 - 33509050
Alignment:
Q  75 tggtcccctaactaaataaactacaaaactgccttctaagtattgannnnnnnnnacagttttggtccctcaggtcaattttgaccaagtcaatgcacac 174  Q
    ||||||||||| |||||||||||||||||  |||  ||||||||||          ||||||||| ||| ||| | ||||||||||||||||||||||||    
T  33508934 tggtcccctaaataaataaactacaaaaccacctcttaagtattgacttttttg--cagttttggccccccagataaattttgaccaagtcaatgcacac 33509031  T
Q  175 gtggacgccacatgtgtat 193  Q
    ||||||||||| |||||||    
T  33509032 gtggacgccacgtgtgtat 33509050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 200
Target Start/End: Complemental strand, 47742541 - 47742491
Alignment:
Q  150 caattttgaccaagtcaatgcacacgtggacgccacatgtgtatttattta 200  Q
    |||||||||||||||||||||||| |||||||| || ||||||||||||||    
T  47742541 caattttgaccaagtcaatgcacatgtggacgctacgtgtgtatttattta 47742491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 195
Target Start/End: Complemental strand, 831344 - 831299
Alignment:
Q  150 caattttgaccaagtcaatgcacacgtggacgccacatgtgtattt 195  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||    
T  831344 caattttgaccaagtcaatgcacacgtggacaccacgtgtgtattt 831299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 200
Target Start/End: Original strand, 831159 - 831227
Alignment:
Q  132 agttttggtccctcaggtcaattttgaccaagtcaatgcacacgtggacgccacatgtgtatttattta 200  Q
    ||||||| ||| ||| ||||||||||||||||| || ||  | ||||||||||||||||||||||||||    
T  831159 agttttgatccttcaagtcaattttgaccaagttaaagctgatgtggacgccacatgtgtatttattta 831227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 170
Target Start/End: Complemental strand, 11787297 - 11787258
Alignment:
Q  131 cagttttggtccctcaggtcaattttgaccaagtcaatgc 170  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  11787297 cagttttggtccctcaggtcaattttgaccaaatcaatgc 11787258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 170
Target Start/End: Complemental strand, 11799464 - 11799425
Alignment:
Q  131 cagttttggtccctcaggtcaattttgaccaagtcaatgc 170  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  11799464 cagttttggtccctcaggtcaattttgaccaaatcaatgc 11799425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 192
Target Start/End: Complemental strand, 12690036 - 12689989
Alignment:
Q  145 caggtcaattttgaccaagtcaatgcacacgtggacgccacatgtgta 192  Q
    |||| |||||||||||||||||||||  ||||||||||||||||||||    
T  12690036 cagggcaattttgaccaagtcaatgctgacgtggacgccacatgtgta 12689989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 81 - 194
Target Start/End: Original strand, 33641904 - 33642014
Alignment:
Q  81 cctaactaaataaactacaaaactgccttctaagtattgannnnnnnnnacagttttggtccctcaggtcaattttgaccaagtcaatgcacacgtggac 180  Q
    ||||||||||||||||||||||||||| | || |||||||          ||||||||| ||| |||  |||||||||| |||||||||||||| |||||    
T  33641904 cctaactaaataaactacaaaactgccctttacgtattgacttttttg--cagttttggcccc-cagaccaattttgacaaagtcaatgcacacatggac 33642000  T
Q  181 gccacatgtgtatt 194  Q
    ||||| ||||||||    
T  33642001 gccacgtgtgtatt 33642014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 200
Target Start/End: Complemental strand, 13388520 - 13388451
Alignment:
Q  131 cagttttggtccctcaggtcaattttgaccaagtcaatgcacacgtggacgccacatgtgtatttattta 200  Q
    |||||||||  ||||||| ||||||| || |||||||||||||| | | |||||| ||||||||||||||    
T  13388520 cagttttgggtcctcaggacaattttaacaaagtcaatgcacacataggcgccacgtgtgtatttattta 13388451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 33642237 - 33642111
Alignment:
Q  72 ttttggtcccctaactaaataaactacaaaactg-ccttctaagtattgannnnnnnnnacagttttggtccctcaggtcaattttgaccaagtcaatgc 170  Q
    |||||| ||||||||||||||||||||||||||| ||  |||||||||||          ||||||||  ||| || | |||||||||||||||||| ||    
T  33642237 ttttggccccctaactaaataaactacaaaactgtccccctaagtattgacttttttg--cagttttgaccccccatgccaattttgaccaagtcaaagc 33642140  T
Q  171 acacgtggacgccacatgtgtatttattt 199  Q
      |||| |||||||||| |||||||||||    
T  33642139 tgacgtagacgccacatatgtatttattt 33642111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 119
Target Start/End: Complemental strand, 39907353 - 39907306
Alignment:
Q  72 ttttggtcccctaactaaataaactacaaaactgccttctaagtattg 119  Q
    |||||||||||||||||| |||| |||||||| |||||||| ||||||    
T  39907353 ttttggtcccctaactaattaaaatacaaaacagccttctatgtattg 39907306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 200
Target Start/End: Original strand, 13388211 - 13388330
Alignment:
Q  79 cccctaactaaataaactacaaaactgccttctaagtattgannnnnnnnnacagttttggtccctcaggtcaattttgaccaagtcaatgcacacgtgg 178  Q
    ||||||||||||||||||||||||| |||  |||| ||||||          ||||||| ||||| || | |||||||||||||||||| ||  |||| |    
T  13388211 cccctaactaaataaactacaaaaccgccccctaaatattgatttttttg--cagttttagtcccccatgccaattttgaccaagtcaaagctgacgtag 13388308  T
Q  179 acgccacatgtgtatttattta 200  Q
    | ||||||| ||||||||||||    
T  13388309 atgccacatatgtatttattta 13388330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 193
Target Start/End: Complemental strand, 29344475 - 29344433
Alignment:
Q  151 aattttgaccaagtcaatgcacacgtggacgccacatgtgtat 193  Q
    |||||| ||||||||||||||| |||||||||||| |||||||    
T  29344475 aatttttaccaagtcaatgcactcgtggacgccacgtgtgtat 29344433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 190
Target Start/End: Original strand, 54953832 - 54953881
Alignment:
Q  141 ccctcaggtcaattttgaccaagtcaatgcacacgtggacgccacatgtg 190  Q
    |||||| | ||||||||||||||||||||   ||||||||||||||||||    
T  54953832 ccctcatgccaattttgaccaagtcaatgttgacgtggacgccacatgtg 54953881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 26858388 - 26858436
Alignment:
Q  72 ttttggtcccctaactaaataaactacaaaactgccttctaagtattga 120  Q
    |||||||||||||||||| |||| |||||||| |||| ||| |||||||    
T  26858388 ttttggtcccctaactaattaaaatacaaaacagcctcctatgtattga 26858436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 199
Target Start/End: Original strand, 47742334 - 47742402
Alignment:
Q  131 cagttttggtccctcaggtcaattttgaccaagtcaatgcacacgtggacgccacatgtgtatttattt 199  Q
    ||||||||| |||||||   ||||| ||||||||||| ||  || |||||||||| |||||||||||||    
T  47742334 cagttttggcccctcagacaaatttcgaccaagtcaaagctgacttggacgccacttgtgtatttattt 47742402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 49000712 - 49000768
Alignment:
Q  151 aattttgaccaagtcaatgcacacgtggacgccacatgtgtatttatttaaattttt 207  Q
    ||||||||||||||||||||  || | ||||||||||||||| || ||||| |||||    
T  49000712 aattttgaccaagtcaatgctgacatagacgccacatgtgtaattttttaatttttt 49000768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 131 - 192
Target Start/End: Original strand, 1406412 - 1406473
Alignment:
Q  131 cagttttggtccctcaggtcaattttgaccaagtcaatgcacacgtggacgccacatgtgta 192  Q
    ||||||||| ||||||||||||||||||||||||||||||  ||||||||||||| ||||||    
T  1406412 cagttttggcccctcaggtcaattttgaccaagtcaatgctgacgtggacgccacgtgtgta 1406473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 131 - 210
Target Start/End: Original strand, 3814860 - 3814938
Alignment:
Q  131 cagttttggtccctcaggtcaattttgaccaagtcaatgcacacgtggacgccacatgtgtatttatttaaatttttaat 210  Q
    ||||||||| ||| |||  |||||||||| ||||||||||||||| ||||||||||||||||||| ||||  ||||||||    
T  3814860 cagttttggccccccagaccaattttgacaaagtcaatgcacacg-ggacgccacatgtgtatttttttatttttttaat 3814938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 145 - 192
Target Start/End: Original strand, 37008330 - 37008377
Alignment:
Q  145 caggtcaattttgaccaagtcaatgcacacgtggacgccacatgtgta 192  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||    
T  37008330 caggccaattttgaccaagtcaatgcacacgtggacgccacgtgtgta 37008377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 79 - 200
Target Start/End: Original strand, 45719389 - 45719508
Alignment:
Q  79 cccctaactaaataaactacaaaactgccttctaagtattgannnnnnnnnacagttttggtccctcaggtcaattttgaccaagtcaatgcacacgtgg 178  Q
    ||||||||||||||||||| ||||| |||| |||||||||||          ||||||||| ||| || | |||||||||||||||||| ||  ||||||    
T  45719389 cccctaactaaataaactataaaaccgcctcctaagtattgattttttag--cagttttggccccccatgccaattttgaccaagtcaaagctgacgtgg 45719486  T
Q  179 acgccacatgtgtatttattta 200  Q
    ||||||||| | ||||||||||    
T  45719487 acgccacatatatatttattta 45719508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 120
Target Start/End: Complemental strand, 6129629 - 6129588
Alignment:
Q  79 cccctaactaaataaactacaaaactgccttctaagtattga 120  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  6129629 cccctaactaaataaactacaaaactgcctcctaagtattga 6129588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 195
Target Start/End: Complemental strand, 37008570 - 37008437
Alignment:
Q  59 ggcttaatagcagttttggtcccctaactaaataaactacaaaactgccttctaagtattgannnnnnnnnacagttttggtccctcaggtcaattttga 158  Q
    ||||||||| |||||||| ||||||||| ||||||| ||||||||||||  ||||||||||           || |||||| ||| |||| |||||||||    
T  37008570 ggcttaataacagttttgatcccctaacaaaataaaatacaaaactgccccctaagtattg--ccccttttgcaattttgg-cccccaggccaattttga 37008474  T
Q  159 ccaagtcaatgcacacgtggacgccacatgtgtattt 195  Q
    ||||||||  ||  |||||||||||||||||||||||    
T  37008473 ccaagtcagagctgacgtggacgccacatgtgtattt 37008437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 6129365 - 6129417
Alignment:
Q  148 gtcaattttgaccaagtcaatgcacacgtggacgccacatgtgtatttattta 200  Q
    |||||||||||||||||||| ||  ||||||||||||||| ||||||||||||    
T  6129365 gtcaattttgaccaagtcaaagctgacgtggacgccacatatgtatttattta 6129417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 210
Target Start/End: Original strand, 13574921 - 13574997
Alignment:
Q  134 ttttggtccctcaggtcaattttgaccaagtcaatgcacacgtggacgccacatgtgtatttatttaaatttttaat 210  Q
    ||||||||||  |||||||||||||||||||||||||  ||||||  ||||| |||||| || ||||| ||||||||    
T  13574921 ttttggtcccctaggtcaattttgaccaagtcaatgctgacgtggttgccacgtgtgtaattttttaattttttaat 13574997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 201
Target Start/End: Original strand, 367013 - 367056
Alignment:
Q  158 accaagtcaatgcacacgtggacgccacatgtgtatttatttaa 201  Q
    ||||||| |||||||||||||||||||||||||||||| |||||    
T  367013 accaagttaatgcacacgtggacgccacatgtgtatttttttaa 367056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 195
Target Start/End: Original strand, 7196730 - 7196841
Alignment:
Q  82 ctaactaaataaactacaaaactgccttctaagtattgannnnnnnnnacagttttggtccctcaggtcaattttgaccaagtcaatgcacacgtggacg 181  Q
    ||||||||||||||||||||||||||  |||||||||||          ||||||| | ||| |||| |||||||||||||||||| ||  | |||||||    
T  7196730 ctaactaaataaactacaaaactgccccctaagtattgacttttttg--cagttttagccccccaggccaattttgaccaagtcaaagctgatgtggacg 7196827  T
Q  182 ccacatgtgtattt 195  Q
    |||| |||||||||    
T  7196828 ccacgtgtgtattt 7196841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 74 - 120
Target Start/End: Original strand, 15788456 - 15788502
Alignment:
Q  74 ttggtcccctaactaaataaactacaaaactgccttctaagtattga 120  Q
    |||| ||||||||||||||||||||||||| |||| |||||||||||    
T  15788456 ttggccccctaactaaataaactacaaaaccgcctcctaagtattga 15788502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 195
Target Start/End: Complemental strand, 46895731 - 46895686
Alignment:
Q  150 caattttgaccaagtcaatgcacacgtggacgccacatgtgtattt 195  Q
    |||||||||||||||||||| |||| ||||||| ||||||||||||    
T  46895731 caattttgaccaagtcaatgtacacatggacgctacatgtgtattt 46895686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 118
Target Start/End: Complemental strand, 45719712 - 45719673
Alignment:
Q  79 cccctaactaaataaactacaaaactgccttctaagtatt 118  Q
    ||||||||||||||||||||||||| |||| |||||||||    
T  45719712 cccctaactaaataaactacaaaaccgcctcctaagtatt 45719673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 205
Target Start/End: Complemental strand, 51690396 - 51690341
Alignment:
Q  150 caattttgaccaagtcaatgcacacgtggacgccacatgtgtatttatttaaattt 205  Q
    ||||||||||||||||||||   ||||||||||||| |||||| || |||||||||    
T  51690396 caattttgaccaagtcaatgttgacgtggacgccacgtgtgtaattttttaaattt 51690341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 192
Target Start/End: Complemental strand, 13575115 - 13575055
Alignment:
Q  131 cagttttggtccctcaggtcaattttgaccaagtcaatgcacacgtggacgccacatgtgta 192  Q
    |||||||||||||  |||||||||| ||||||||||||||  | |||||| |||||||||||    
T  13575115 cagttttggtcccctaggtcaattt-gaccaagtcaatgctgatgtggacaccacatgtgta 13575055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 29816367 - 29816318
Alignment:
Q  150 caattttgaccaagtcaatgcacacgtggacgccacatgtgtatttattt 199  Q
    |||||||||||||||||||||  |  ||||||||||||||||| ||||||    
T  29816367 caattttgaccaagtcaatgctgatttggacgccacatgtgtaattattt 29816318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 192
Target Start/End: Original strand, 39384358 - 39384399
Alignment:
Q  151 aattttgaccaagtcaatgcacacgtggacgccacatgtgta 192  Q
    ||||||||||||||||||||  ||||||||||||| ||||||    
T  39384358 aattttgaccaagtcaatgctgacgtggacgccacctgtgta 39384399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 179
Target Start/End: Original strand, 40345398 - 40345427
Alignment:
Q  150 caattttgaccaagtcaatgcacacgtgga 179  Q
    ||||||||||||||||||||||||||||||    
T  40345398 caattttgaccaagtcaatgcacacgtgga 40345427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 40877015 - 40876967
Alignment:
Q  72 ttttggtcccctaactaaataaactacaaaactgccttctaagtattga 120  Q
    |||||| ||||||||||||||||||||||||| |||   ||||||||||    
T  40877015 ttttggccccctaactaaataaactacaaaaccgccccttaagtattga 40876967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 43117299 - 43117347
Alignment:
Q  72 ttttggtcccctaactaaataaactacaaaactgccttctaagtattga 120  Q
    ||||||||| |||| |||||||||||||||||  ||| |||||||||||    
T  43117299 ttttggtcctctaaataaataaactacaaaaccacctcctaagtattga 43117347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 150 - 199
Target Start/End: Original strand, 1003578 - 1003627
Alignment:
Q  150 caattttgaccaagtcaatgcacacgtggacgccacatgtgtatttattt 199  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  1003578 caattttgacaaagtcaatgcacacgtggacgccacatgtttatttattt 1003627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 72 - 213
Target Start/End: Complemental strand, 35795601 - 35795463
Alignment:
Q  72 ttttggtcccctaactaaataaactacaaaactgccttctaagtattgannnnnnnnnacagttttggtccctcaggtcaattttgaccaagtcaatgca 171  Q
    |||||| ||||||||||||||||||||||||| ||   |||||||||||         |||||||||| ||| ||   |||||||||| |||||||||||    
T  35795601 ttttggccccctaactaaataaactacaaaaccgcaccctaagtattgactttttt--acagttttggcccc-cataccaattttgacaaagtcaatgca 35795505  T
Q  172 cacgtggacgccacatgtgtatttatttaaatttttaatatt 213  Q
    ||| |||||||||| ||||||||||||||  |||| ||||||    
T  35795504 cacatggacgccacgtgtgtatttatttattttttaaatatt 35795463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 72 - 200
Target Start/End: Complemental strand, 45163730 - 45163605
Alignment:
Q  72 ttttggtcccctaactaaataaactacaaaactgccttctaagtattgannnnnnnnnacagttttggtccctcaggtcaattttgaccaagtcaatgca 171  Q
    |||||| ||||||||||||||||||||||||| |||  |||||||||||          ||||||||| ||| || |||||||||||||||||||| ||     
T  45163730 ttttggccccctaactaaataaactacaaaaccgccccctaagtattgacttttttg--cagttttggcccc-catgtcaattttgaccaagtcaaagct 45163634  T
Q  172 cacgtggacgccacatgtgtatttattta 200  Q
     ||||||||||||| | ||||||||||||    
T  45163633 gacgtggacgccacgtatgtatttattta 45163605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 198
Target Start/End: Original strand, 23475744 - 23475792
Alignment:
Q  150 caattttgaccaagtcaatgcacacgtggacgccacatgtgtatttatt 198  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||||    
T  23475744 caattttgacaaagtcaatgcacacatggacgccacatgtgtatttatt 23475792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 199
Target Start/End: Original strand, 45163480 - 45163548
Alignment:
Q  131 cagttttggtccctcaggtcaattttgaccaagtcaatgcacacgtggacgccacatgtgtatttattt 199  Q
    ||||||||| | | |||| |||||||||| |||||||||||||| |||||||||| |||||||||||||    
T  45163480 cagttttggcctcccaggccaattttgacaaagtcaatgcacacatggacgccacgtgtgtatttattt 45163548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 210
Target Start/End: Complemental strand, 17512407 - 17512346
Alignment:
Q  149 tcaattttgaccaagtcaatgcacacgtggacgccacatgtgtatttatttaaatttttaat 210  Q
    ||||||||||| || ||||||||||| |||||||||| ||||||||||||||  ||||||||    
T  17512407 tcaattttgacaaactcaatgcacacatggacgccacgtgtgtatttatttatttttttaat 17512346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 199
Target Start/End: Complemental strand, 1003742 - 1003691
Alignment:
Q  148 gtcaattttgaccaagtcaatgcacacgtggacgccacatgtgtatttattt 199  Q
    |||||||||||||||||||| ||  ||||||||||||| |||||||||||||    
T  1003742 gtcaattttgaccaagtcaaagctgacgtggacgccacgtgtgtatttattt 1003691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 200
Target Start/End: Original strand, 17512141 - 17512267
Alignment:
Q  72 ttttggtcccctaactaaataaactacaaaactgccttctaagtattgannnnnnnnnacagttttggtccctcaggtcaattttgaccaagtcaatgca 171  Q
    |||||| ||||||||||||||||||||||||  |||  |||||||||||          ||||||||| ||| || |||||||||||||||||||| |      
T  17512141 ttttggccccctaactaaataaactacaaaaacgccccctaagtattgacttttttg--cagttttggccccccatgtcaattttgaccaagtcaaagtt 17512238  T
Q  172 cacgtggacgccacatgtgtatttattta 200  Q
     |||||||| ||| || ||||||||||||    
T  17512239 gacgtggactccatatatgtatttattta 17512267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 14170466 - 14170514
Alignment:
Q  72 ttttggtcccctaactaaataaactacaaaactgccttctaagtattga 120  Q
    |||||| ||||||| ||||||||||||||||| |||| |||||||||||    
T  14170466 ttttggccccctaattaaataaactacaaaaccgcctgctaagtattga 14170514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 192
Target Start/End: Original strand, 755987 - 756032
Alignment:
Q  146 aggtcaattttgaccaagtcaatgcacacgtggacgccacatgtgta 192  Q
    |||||||||||||||||||||||||  |||||| |||||||||||||    
T  755987 aggtcaattttgaccaagtcaatgctgacgtgg-cgccacatgtgta 756032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 185
Target Start/End: Original strand, 29219177 - 29219231
Alignment:
Q  131 cagttttggtccctcaggtcaattttgaccaagtcaatgcacacgtggacgccac 185  Q
    ||||||||| ||| || | |||||||||||||||||||||  |||||||||||||    
T  29219177 cagttttggccccccaagccaattttgaccaagtcaatgctgacgtggacgccac 29219231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 45522171 - 45522228
Alignment:
Q  61 cttaatagcagttttggtcccctaactaaataaactacaaaactgccttctaagtattg 119  Q
    ||||||||||||||||| |||||||| ||||||| |||||||| |||  ||||||||||    
T  45522171 cttaatagcagttttgg-cccctaacaaaataaaatacaaaaccgccccctaagtattg 45522228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 195
Target Start/End: Complemental strand, 9499153 - 9499108
Alignment:
Q  150 caattttgaccaagtcaatgcacacgtggacgccacatgtgtattt 195  Q
    |||||||||||||||||||||  ||||| |||| ||||||||||||    
T  9499153 caattttgaccaagtcaatgctgacgtgaacgcaacatgtgtattt 9499108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 90
Target Start/End: Original strand, 11288981 - 11289014
Alignment:
Q  57 ttggcttaatagcagttttggtcccctaactaaa 90  Q
    ||||||||||||||||||||| ||||||||||||    
T  11288981 ttggcttaatagcagttttggccccctaactaaa 11289014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 207
Target Start/End: Complemental strand, 14507912 - 14507840
Alignment:
Q  134 ttttggtccctcaggtcaattttgaccaagtcaatgcacacgtggacgccacatgtgtatttatttaaattttt 207  Q
    |||||| |||| ||| ||||||||||||||||||||   |||||| ||||||||||||| || |||| ||||||    
T  14507912 ttttggccccttaggccaattttgaccaagtcaatgttgacgtgg-cgccacatgtgtaattttttatattttt 14507840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 171
Target Start/End: Original strand, 18896531 - 18896568
Alignment:
Q  134 ttttggtccctcaggtcaattttgaccaagtcaatgca 171  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  18896531 ttttggtccctcagaccaattttgaccaagtcaatgca 18896568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 145 - 187
Target Start/End: Complemental strand, 1614999 - 1614957
Alignment:
Q  145 caggtcaattttgaccaagtcaatgcacacgtggacgccacat 187  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  1614999 caggccaattttgaccaagtcaatgcacacgtggacgccacat 1614957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 30370102 - 30370056
Alignment:
Q  61 cttaatagcagttttggtcccctaactaaataaactacaaaactgcc 107  Q
    ||||||||||||||||| |||||||| ||||||| ||||||||||||    
T  30370102 cttaatagcagttttggccccctaacaaaataaaatacaaaactgcc 30370056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 195
Target Start/End: Original strand, 30369883 - 30369947
Alignment:
Q  131 cagttttggtccctcaggtcaattttgaccaagtcaatgcacacgtggacgccacatgtgtattt 195  Q
    ||||||||| ||| || | |||||||||| |||| |||||| ||||||||||||| |||||||||    
T  30369883 cagttttggccccacaagccaattttgactaagtgaatgcatacgtggacgccacgtgtgtattt 30369947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 174
Target Start/End: Complemental strand, 12799005 - 12798962
Alignment:
Q  131 cagttttggtccctcaggtcaattttgaccaagtcaatgcacac 174  Q
    ||||||||| ||| |||| |||||||||||||||||||||||||    
T  12799005 cagttttggccccccaggccaattttgaccaagtcaatgcacac 12798962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 192
Target Start/End: Complemental strand, 2539201 - 2539159
Alignment:
Q  150 caattttgaccaagtcaatgcacacgtggacgccacatgtgta 192  Q
    ||||||||| ||||||| |||||||||| ||||||||||||||    
T  2539201 caattttgatcaagtcagtgcacacgtgaacgccacatgtgta 2539159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 185
Target Start/End: Original strand, 12798827 - 12798879
Alignment:
Q  132 agttttggtccctcaggtcaattttgaccaagtcaatgcacacgtggacgccac 185  Q
    |||||||| ||| ||||||||||||||||||||||| ||  |||||||||||||    
T  12798827 agttttggcccc-caggtcaattttgaccaagtcaaagctgacgtggacgccac 12798879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 2539104 - 2539144
Alignment:
Q  152 attttgaccaagtcaatgcacacgtggacgccacatgtgta 192  Q
    |||||||||||||||| ||  ||||||||||||||||||||    
T  2539104 attttgaccaagtcaaagctgacgtggacgccacatgtgta 2539144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 192
Target Start/End: Complemental strand, 27877 - 27832
Alignment:
Q  146 aggtcaattttgaccaagtcaatgcacacgtggacgccacatgtgta 192  Q
    |||||||||||||||||||||||||  |||||| |||||||||||||    
T  27877 aggtcaattttgaccaagtcaatgctgacgtgg-cgccacatgtgta 27832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 8568 - 8609
Alignment:
Q  59 ggcttaatagcagttttggtcccctaactaaataaactacaa 100  Q
    ||||||||||||||||||| |||||||| ||||||| |||||    
T  8568 ggcttaatagcagttttggccccctaacaaaataaaatacaa 8609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 9211 - 9252
Alignment:
Q  59 ggcttaatagcagttttggtcccctaactaaataaactacaa 100  Q
    ||||||||||||||||||| |||||||| ||||||| |||||    
T  9211 ggcttaatagcagttttggccccctaacaaaataaaatacaa 9252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 204
Target Start/End: Original strand, 21285 - 21337
Alignment:
Q  151 aattttgaccaagtcaatgcacacgtggacgccacatgtgtatttatttaaatt 204  Q
    ||||||||| |||||||||||||| |||||||||| | ||||||| ||||||||    
T  21285 aattttgacaaagtcaatgcacacatggacgccacttatgtattt-tttaaatt 21337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 21209 - 21257
Alignment:
Q  72 ttttggtcccctaactaaataaactacaaaactgccttctaagtattga 120  Q
    |||||||| |||||||||||||||||||||| ||||   ||||||||||    
T  21209 ttttggtctcctaactaaataaactacaaaattgccccttaagtattga 21257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 21459 - 21407
Alignment:
Q  148 gtcaattttgaccaagtcaatgcacacgtggacgccacatgtgtatttattta 200  Q
    ||||||||||| |||||||| |   ||||||||||||||| ||||||||||||    
T  21459 gtcaattttgatcaagtcaaagttgacgtggacgccacatatgtatttattta 21407  T

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Target: scaffold0468 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 10395 - 10443
Alignment:
Q  72 ttttggtcccctaactaaataaactacaaaactgccttctaagtattga 120  Q
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T  10395 ttttggccccctaactaaataaactacaaaaccgccccttaagtattga 10443  T

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