View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18806_high_2 (Length: 576)
Name: NF18806_high_2
Description: NF18806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18806_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 554; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 1 - 562
Target Start/End: Original strand, 44837116 - 44837677
Alignment:
| Q |
1 |
aaaatttcccatcatcaaactctttactcaccaattcagcttggtaaacacatgcctcactaaacctagtttccaccattctataccttgcaaagaatct |
100 |
Q |
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| T |
44837116 |
aaaatttcccatcatcaaactctttactcaccaattcagcttggtaaacacatgcctcactaaacctagtttccaccattctataccttgcaaagaatct |
44837215 |
T |
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| Q |
101 |
tctccaaacatcaattttcacatttctaacagtcctttctctaccttctgacgcaacaatatttcttatccctgcagatagtattccttctgttatcatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
44837216 |
tctccaaacatcaattttcacatttctaacagtcctttctctaccttctgacgcaacaatatttcttaaccctacagatagtattccttctgttatcatt |
44837315 |
T |
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| Q |
201 |
ctacactcatcctcctcgctcatacatgtttcagccatatcgaaaaaagccgagtagaagaacaacgcttcaacgaatcggttcacaaaagactgcgaat |
300 |
Q |
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| T |
44837316 |
ctacactcatcctcctcgctcatacatgtttcagccatatcgaaaaaagccgagtagaagaacaacgcttcaacgaatcggttcacaaaagactgcgaat |
44837415 |
T |
|
| Q |
301 |
taagacttgcttcagtttcaagtactatcattatacatggtttgatatctctcaaaaccctcatcaaattttccatacaatcttgctttgatattaaagt |
400 |
Q |
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| T |
44837416 |
taagacttgcttcagtttcaagtactatcattatacatggtttgatatctctcaaaaccctcatcaaattttccatacaatcttgctttgatattaaagt |
44837515 |
T |
|
| Q |
401 |
ccttagaaaatatggagaataaacagcaacagcttcatccttttcaatttcaaaatcatcctctttgatttccaacatatcttctactaaaacaggttta |
500 |
Q |
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| T |
44837516 |
ccttagaaaatatggagaataaacagcaacagcttcatccttttcaatttcaaaatcatcctctttgatttccaacatatcttctactaaaacaggttta |
44837615 |
T |
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| Q |
501 |
tataaaaagggcaagttcaatgattcagcaaaactagctaaatttttgccagtttcttcaat |
562 |
Q |
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| T |
44837616 |
tataaaaagggcaagttcaatgattcagcaaaactagctaaatttttgccagtttcttcaat |
44837677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 68 - 210
Target Start/End: Original strand, 38926662 - 38926804
Alignment:
| Q |
68 |
agtttccaccattctataccttgcaaagaatcttctccaaacatcaattttcacatttctaacagtcctttctctaccttctgacgcaacaatatttctt |
167 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| |||||||| | |||| | ||||||| |||||| |
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| T |
38926662 |
agtttccaccattctataccttgcaaagaaccttctccaaacatcaatcttcacattcctaaccttcctttcttcatcttccaaaccaacaatgtttctt |
38926761 |
T |
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| Q |
168 |
atccctgcagatagtattccttctgttatcattctacactcat |
210 |
Q |
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|||||| |||||| |||| |||| | || | ||||||||||| |
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| T |
38926762 |
atcccttcagataatattgcttccatcattactctacactcat |
38926804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 498 - 559
Target Start/End: Original strand, 38927092 - 38927153
Alignment:
| Q |
498 |
ttatataaaaagggcaagttcaatgattcagcaaaactagctaaatttttgccagtttcttc |
559 |
Q |
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|||||||||||||| | |||||| |||||||||||||| |||| |||||||| ||||||| |
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| T |
38927092 |
ttatataaaaagggtatgttcaaggattcagcaaaactcattaaacttttgccaatttcttc |
38927153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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