View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18806_low_5 (Length: 285)
Name: NF18806_low_5
Description: NF18806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18806_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 18 - 274
Target Start/End: Complemental strand, 39066576 - 39066329
Alignment:
| Q |
18 |
ttatcctaactcgattattttaatattttaaaataatccaaatatatactgcaatacaaacagaaagatctctattctctactttgaccggttaccgact |
117 |
Q |
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| T |
39066576 |
ttatcctaactcgattattttaatattttaaaataatcaaaatatatactgaaatacaaacaaaaagatcttta-------ctttcaccggttaccgact |
39066484 |
T |
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| Q |
118 |
ccatgactagttgtaacttggttaaaattggtgtgaaatgtcttaaacagagacataggttgtgactcaactcaattatataaaatagacatcaataaag |
217 |
Q |
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| T |
39066483 |
ctatgattagttgtaatttggttaaaattgatgtgaaatgtcttaaagagagacataagtcgtgactcaactcaattatataaaatagacatcaat-atg |
39066385 |
T |
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| Q |
218 |
ttacgtatttaattcaatatttctcaattgatatggcttcataaacgtctgatgatg |
274 |
Q |
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| T |
39066384 |
ttacgtattt-attcaatatttctcaattgatatggcttcacaaacgtctgatgatg |
39066329 |
T |
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