View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18806_low_6 (Length: 282)
Name: NF18806_low_6
Description: NF18806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18806_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 20 - 271
Target Start/End: Complemental strand, 12069253 - 12069011
Alignment:
| Q |
20 |
tttatgaaattcttgaagaaaaagatttctccaagattacatcatatatagaaatagtacacatcctctcaggtgattttggaataagcaagactcaagc |
119 |
Q |
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| T |
12069253 |
tttatgaaattcttgaagaaaaatatttctccaagatta---------tagaaatagtacacatcctctcaggtgattttggaataagcaagactcaagc |
12069163 |
T |
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| Q |
120 |
tagtgacatttagtggagaaagaattcaacagaggaaggacatgatcaaatttctaaatccccttttttacattgcttttgttgtaatactgcatcttat |
219 |
Q |
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| T |
12069162 |
tagtgacatttagtggagaaagaattcaacagaagaaggacctggtcaaatttctaaatccccttttttacattgcttttattgtaatattgcatcttat |
12069063 |
T |
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| Q |
220 |
tcttgcaagtgtagagatgtatgannnnnnngcatggtgatatgtgtgatga |
271 |
Q |
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| T |
12069062 |
tcttgcaagtgtagagatgtatgatttttttgaatggtgatatgtgtgatga |
12069011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 22 - 130
Target Start/End: Complemental strand, 14458577 - 14458469
Alignment:
| Q |
22 |
tatgaaattcttgaagaaaaagatttctccaagattacatcatatatagaaatagtacacatcctctcaggtgattttggaataagcaagactcaagcta |
121 |
Q |
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| T |
14458577 |
tatgaaattcttgaagaaaaagatttctccaagattacatcatatatagaaatagtacacatcctttcaggtgattttagaataagcaagacgcaagcaa |
14458478 |
T |
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| Q |
122 |
gtgacattt |
130 |
Q |
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| T |
14458477 |
gcgacattt |
14458469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 22 - 116
Target Start/End: Complemental strand, 14467460 - 14467367
Alignment:
| Q |
22 |
tatgaaattcttgaagaaaaagatttctccaagattacatcatatatagaaatagtacacatcctctcaggtgattttggaataagcaagactca |
116 |
Q |
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| T |
14467460 |
tatgaaattcttgaagaaaaagatttctc-aagattacatcatatatagaaatagtacacatcctctcaggtgattttagaataagcaagactca |
14467367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 128 - 218
Target Start/End: Complemental strand, 13751813 - 13751726
Alignment:
| Q |
128 |
tttagtggagaaagaattcaacagaggaaggacatgatcaaatttctaaatccccttttttacattgcttttgttgtaatactgcatctta |
218 |
Q |
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| T |
13751813 |
tttagtggagaaagaagtcaactga---aggacctgatcaaatttctaaatccccttttttgttttgattttggtgtaagattgcatctta |
13751726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 128 - 218
Target Start/End: Complemental strand, 13765214 - 13765127
Alignment:
| Q |
128 |
tttagtggagaaagaattcaacagaggaaggacatgatcaaatttctaaatccccttttttacattgcttttgttgtaatactgcatctta |
218 |
Q |
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| T |
13765214 |
tttagtggagaaagaagtcaactga---aggacctgatcaaatttctaaatccccttttttgatttgattttggtgtaagattgcatctta |
13765127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 206
Target Start/End: Complemental strand, 13738382 - 13738306
Alignment:
| Q |
128 |
tttagtggagaaagaattcaacagaggaaggacatgatcaaatttctaaatcccct-tttttacattgcttttgttgtaa |
206 |
Q |
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| T |
13738382 |
tttagtggagaaagaagtcaactga---aggacctcatcaaatttctaaatcccctatttttgcattgattttggtgtaa |
13738306 |
T |
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