View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18807_high_1 (Length: 940)
Name: NF18807_high_1
Description: NF18807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18807_high_1 |
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| [»] scaffold0250 (1 HSPs) |
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| [»] scaffold0011 (4 HSPs) |
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Alignment Details
Target: scaffold0250 (Bit Score: 788; Significance: 0; HSPs: 1)
Name: scaffold0250
Description:
Target: scaffold0250; HSP #1
Raw Score: 788; E-Value: 0
Query Start/End: Original strand, 54 - 925
Target Start/End: Complemental strand, 14897 - 14017
Alignment:
| Q |
54 |
tgatattaagg-agatgcattagttagggttatgcataaggaaaggcctaagctaattatgccaaataatcatattacaaacaaaaatgcatttatctgc |
152 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14897 |
tgatattaagggagatgcattagttagggttatgcataaggaaaggcctaagccaattatgccaaataatcatattacaaacaaaaatgcatttatctgc |
14798 |
T |
|
| Q |
153 |
caat--------atacaatcaattttcttttgaaaagttaaactaacacatcgaaattggcaacgagaagaatcgaacctaatacctcactcaatggtct |
244 |
Q |
| |
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|||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
14797 |
caatctgccagtatacaatcaatttccttttgaaaagttaaattaacacatcgaaattggcaacgaggagaatcgaacctaatacctcattcaatggtct |
14698 |
T |
|
| Q |
245 |
caacccaacaccaccagactaaaccgccaagtgggttaatatataattatttgatacatcattggacttcagataagatatttaagactttgtggatgac |
344 |
Q |
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||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14697 |
caaaccaacaccaccagactaaaccgccaaatgggttaatatataattatttgatacatcattggacttcagataagatatttaagactttgtggatgac |
14598 |
T |
|
| Q |
345 |
aaatactataatttgttgctgaaacattatattttacgaacaatttatttaaaatgttcttgttgatgttatgaaatgtttaggagggagttactgaaat |
444 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14597 |
aaatactgtaatttgttgctgaaacattatattttacgaacaatttatttaaaatgttcttgttgatgttatgaaatgtttaggagggagttactgaaat |
14498 |
T |
|
| Q |
445 |
caaagctactttcaaaggacatgtcttgagttttttcagaaagaaggacaagtcttgagttgatacgagatctgagaaaacatttgtatgtgaagtcata |
544 |
Q |
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|||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14497 |
caaagctactctcaaaggacatgtcttgagttttttaagaaagaaggacatgtcttgagttgatacgagatctgagaaaacatttgtatgtgaagtcata |
14398 |
T |
|
| Q |
545 |
aattattgttctctttaatttatattccaccatttgtgaatttagaaaataggaagggtgaatttgccttttgatttttcttaccaaatcagataacaag |
644 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14397 |
aattattgttctctttaatttatattccaccatttgtgaatttagaaaataggaagggtgaatttgccttttgatttttcttaccaaatcagataacaag |
14298 |
T |
|
| Q |
645 |
ctgttggttgatgatgatacgttcattgctgtgttgttgatttcttccatcgtctcaagggtaacacttgtatagggaagagcaaggctactatttgtgc |
744 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14297 |
ctgttggttgatgatgatacgttcattgctgtgttgttgatttcttccatcgtctcaagggtaacacttgtatagggaagagcaaggctactatttgtgc |
14198 |
T |
|
| Q |
745 |
tgaatctagttcccattgttggatcttttataggactagattttaagcacgtgtggtatgcatcatttattgccatcatgctttatccttttctttttaa |
844 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
14197 |
tgaatctagttcccattgttggatcttttataggactagattttaagcacgtgtggtatgcatcatttattgccatcatgctttatctttttctttttaa |
14098 |
T |
|
| Q |
845 |
ggggtgtgctatatcatttatccacaaccacaagtggcaacatgctatattattatttttatgttttttaagggatgttat |
925 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
14097 |
ggggtgtgctatatcctttatccacaaccacaagtggcaacatgctatattattatctttatgttttttaagggatgttat |
14017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 1e-31; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 573 - 830
Target Start/End: Complemental strand, 17124588 - 17124309
Alignment:
| Q |
573 |
accatttgtgaatttagaaaataggaagggtgaatttgccttttgatttttcttaccaaatcagataacaagctgttggttgatgatgatacgttcattg |
672 |
Q |
| |
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||||||| || |||||||||||| |||| ||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
17124588 |
accatttttggatttagaaaataagaagaatgaatttaacttttgatttt-cttaccaaatcagataaccagctgttggttgatgat---acgttcattg |
17124493 |
T |
|
| Q |
673 |
ctgtgttgttgatttcttccatcgtctcaa-------gggtaacacttgtat--------------agggaagagcaaggcta---ctatttgtgctgaa |
748 |
Q |
| |
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||||||||||||||||||||| ||||||| ||||||||||||||| ||| ||||| ||||||| ||||||||| |||| |
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| T |
17124492 |
ttgtgttgttgatttcttccattgtctcaatcaaattgggtaacacttgtatactaaaattaaaacaggaaagaggaaggctagtgctatttgtggtgaa |
17124393 |
T |
|
| Q |
749 |
-tctagttcccattgttggatc-ttttataggactagattttaagcacgtgtggtatgcatcatttattgccatcatgctttat |
830 |
Q |
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| T |
17124392 |
ttagagtttccattgttagatcattttataggactaaattttaaacacgtgtggtatgtatcatttattggcaacatgctttat |
17124309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 602 - 701
Target Start/End: Complemental strand, 17114871 - 17114776
Alignment:
| Q |
602 |
gtgaatttgccttttgatttttcttaccaaatcagataacaagctgttggttgatgatgatacgttcattgctgtgttgttgatttcttccatcgtctca |
701 |
Q |
| |
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|||||||| ||||||||||| |||||||||||||||||| ||| ||||||||||||| |||||||||| ||||||||||||||||||||| |||||| |
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| T |
17114871 |
gtgaatttaacttttgatttt-cttaccaaatcagataaccagccgttggttgatgat---acgttcattgttgtgttgttgatttcttccattgtctca |
17114776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 752 - 800
Target Start/End: Complemental strand, 17114700 - 17114652
Alignment:
| Q |
752 |
agttcccattgttggatcttttataggactagattttaagcacgtgtgg |
800 |
Q |
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|||| |||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
17114700 |
agtttccattgttagatcttttataggactaaattttaagcacgtgtgg |
17114652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 7e-24; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 620 - 713
Target Start/End: Complemental strand, 25238748 - 25238655
Alignment:
| Q |
620 |
ttttcttaccaaatcagataacaagctgttggttgatgatgatacgttcattgctgtgttgttgatttcttccatcgtctcaagggtaacactt |
713 |
Q |
| |
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|||||||||||||||||||||| ||||| || ||||||||||||| |||||||||| |||||||||||| ||||| |||||||||||| |||| |
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| T |
25238748 |
ttttcttaccaaatcagataaccagctgctgattgatgatgatactttcattgctgagttgttgatttcctccattctctcaagggtaatactt |
25238655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 620 - 713
Target Start/End: Original strand, 25113926 - 25114019
Alignment:
| Q |
620 |
ttttcttaccaaatcagataacaagctgttggttgatgatgatacgttcattgctgtgttgttgatttcttccatcgtctcaagggtaacactt |
713 |
Q |
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|||||||||||||||||||||| ||||| || ||||||||||||| ||||| |||| |||||||||||| ||||| |||||||||||| |||| |
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| T |
25113926 |
ttttcttaccaaatcagataaccagctgctgattgatgatgatactttcatagctgagttgttgatttcctccattctctcaagggtaatactt |
25114019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 757 - 801
Target Start/End: Original strand, 25065420 - 25065464
Alignment:
| Q |
757 |
ccattgttggatcttttataggactagattttaagcacgtgtggt |
801 |
Q |
| |
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||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
25065420 |
ccattgttggatcttttatagcactatattttaagcacgtgtggt |
25065464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 620 - 694
Target Start/End: Original strand, 25065275 - 25065346
Alignment:
| Q |
620 |
ttttcttaccaaatcagataacaagctgttggttgatgatgatacgttcattgctgtgttgttgatttcttccat |
694 |
Q |
| |
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||||||||||||||||| |||| ||||| || |||||||| || |||||||||| |||||||||||| ||||| |
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| T |
25065275 |
ttttcttaccaaatcagttaaccagctgctgattgatgat---actttcattgctgggttgttgatttcctccat |
25065346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 359 - 427
Target Start/End: Complemental strand, 29241085 - 29241017
Alignment:
| Q |
359 |
gttgctgaaacattatattttacgaacaatttatttaaaatgttcttgttgatgttatgaaatgtttag |
427 |
Q |
| |
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|||||||||| |||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
29241085 |
gttgctgaaaaattacattttaggaacaatttatttaaaatgttctcattgatgttatgaaatgtttag |
29241017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 484 - 537
Target Start/End: Complemental strand, 29240961 - 29240908
Alignment:
| Q |
484 |
aaagaaggacaagtcttgagttgatacgagatctgagaaaacatttgtatgtga |
537 |
Q |
| |
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|||||||||||||||||| |||||||| |||| ||||||| | ||||||||||| |
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|
| T |
29240961 |
aaagaaggacaagtcttgggttgatactagatatgagaaagcctttgtatgtga |
29240908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 48; Significance: 6e-18; HSPs: 4)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 620 - 713
Target Start/End: Complemental strand, 220741 - 220651
Alignment:
| Q |
620 |
ttttcttaccaaatcagataacaagctgttggttgatgatgatacgttcattgctgtgttgttgatttcttccatcgtctcaagggtaacactt |
713 |
Q |
| |
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|||||||||||||||||||||| ||||| || |||||||| |||||||| |||||| |||||||||| ||||| ||||||| |||||||||| |
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| T |
220741 |
ttttcttaccaaatcagataaccagctgctgcttgatgat---acgttcatagctgtgctgttgatttcctccatagtctcaaaggtaacactt |
220651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 620 - 713
Target Start/End: Complemental strand, 182862 - 182772
Alignment:
| Q |
620 |
ttttcttaccaaatcagataacaagctgttggttgatgatgatacgttcattgctgtgttgttgatttcttccatcgtctcaagggtaacactt |
713 |
Q |
| |
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||||||||||||||| |||||| ||||| || |||||||| |||||||| |||||| |||||||||| ||||| ||||||| || ||||||| |
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| T |
182862 |
ttttcttaccaaatccgataaccagctgctgcttgatgat---acgttcatagctgtgctgttgatttcctccatagtctcaaagggaacactt |
182772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 752 - 798
Target Start/End: Complemental strand, 182711 - 182665
Alignment:
| Q |
752 |
agttcccattgttggatcttttataggactagattttaagcacgtgt |
798 |
Q |
| |
|
|||||| | ||||| |||||||||||||||||||||||||||||||| |
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| T |
182711 |
agttccaaatgttgaatcttttataggactagattttaagcacgtgt |
182665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 752 - 798
Target Start/End: Complemental strand, 220588 - 220542
Alignment:
| Q |
752 |
agttcccattgttggatcttttataggactagattttaagcacgtgt |
798 |
Q |
| |
|
|||||| | ||||| |||||||||||||||||||||||||||||||| |
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|
| T |
220588 |
agttccaaatgttgaatcttttataggactagattttaagcacgtgt |
220542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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