View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18807_high_14 (Length: 239)
Name: NF18807_high_14
Description: NF18807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18807_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 27065778 - 27065987
Alignment:
| Q |
15 |
catcattttgttcatcgaagaattctcggacaccttaaaaacctgcttcatctcattcaacttagaggatgcaaatggcaatttggtcaaaatggaacga |
114 |
Q |
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| T |
27065778 |
catcatcttattcatcgaagaattctcggacaccttgaaaacttgcttcatctcattcaacttagaagatgcaaatggcaatttggtcaaaatggaacga |
27065877 |
T |
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| Q |
115 |
ggcaaaaacgaccttggcggtaatttatcccttatatctggcataggcataactgtcccttccttcaacattttctcccggaaaaacttaccaggttgaa |
214 |
Q |
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| T |
27065878 |
ggcaaaaacgaccttggcggtaatttatcccttatatctggcataggcataactgtcccttccttcaacatcttctcccggaaaaacttaccaggttgaa |
27065977 |
T |
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| Q |
215 |
ccatgttttt |
224 |
Q |
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|||||||||| |
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| T |
27065978 |
ccatgttttt |
27065987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 27 - 216
Target Start/End: Original strand, 27079507 - 27079696
Alignment:
| Q |
27 |
catcgaagaattctcggacaccttaaaaacctgcttcatctcattcaacttagaggatgcaaatggcaatttggtcaaaatggaacgaggcaaaaacgac |
126 |
Q |
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| T |
27079507 |
catcgaggaattctcagacaccttaaaaacttgcttcaactcattcaacttagaagatgcaaagggtaatttggtcaaaatggtacgtggtaaaaacgac |
27079606 |
T |
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| Q |
127 |
cttggcggtaatttatcccttatatctggcataggcataactgtcccttccttcaacattttctcccggaaaaacttaccaggttgaacc |
216 |
Q |
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| T |
27079607 |
cttggcggtaatttatccttaatatccggcataggcataaccaccccttgtttcaacatcttttctcggaaaaacttaccaggttgaacc |
27079696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 34 - 217
Target Start/End: Original strand, 27053355 - 27053538
Alignment:
| Q |
34 |
gaattctcggacaccttaaaaacctgcttcatctcattcaacttagaggatgcaaatggcaatttggtcaaaatggaacgaggcaaaaacgaccttggcg |
133 |
Q |
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| T |
27053355 |
gaattttcagacaccttgaaaacttgcttcatattgttcaacttagaagatgcaaagggcaatttgatcaaaatggaacgtggcaaaaacgacctaggtg |
27053454 |
T |
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| Q |
134 |
gtaatttatcccttatatctggcataggcataactgtcccttccttcaacattttctcccggaaaaacttaccaggttgaacca |
217 |
Q |
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| T |
27053455 |
gtaacttatcccttgtatctggcataggcataacagtcccttccttcaacatcctttcgcggaaaaacttacctggttcaacca |
27053538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 118 - 209
Target Start/End: Complemental strand, 14866157 - 14866066
Alignment:
| Q |
118 |
aaaaacgaccttggcggtaatttatcccttatatctggcataggcataactgtcccttccttcaacattttctcccggaaaaacttaccagg |
209 |
Q |
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| T |
14866157 |
aaaaacgaccttttaggtaatttatctctaatatcaggcataggcattaccgtaccttctttcaacattttctctctaaaaaacttaccagg |
14866066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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