View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18807_high_2 (Length: 896)
Name: NF18807_high_2
Description: NF18807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18807_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 694; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 694; E-Value: 0
Query Start/End: Original strand, 12 - 871
Target Start/End: Original strand, 27619289 - 27620151
Alignment:
| Q |
12 |
aagcaaaggagcaggcatccacgatttccaaaagaattaatgaaaggtttggttttctaggttataaacctgtcatcatcattgaagattttgttccttt |
111 |
Q |
| |
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|||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
27619289 |
aagcaaaggagcaggcatccacaatttccaaaggaattaatgaaatgtttggttttctaggttataaacctgtcatcatcattgaaggttttgttccttt |
27619388 |
T |
|
| Q |
112 |
ccataagaaggcatcttactacgctttggccgaatgttgtattgtatatgcggagcaggatggtacaaatttggttccacacgagtacattgtgtgcagg |
211 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||| ||||||| |
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| T |
27619389 |
ccataagaaggcagcttactacgctttggccgaatgttgtattgtatatgcggagcaggatggtagaa-tttggttccatacgagtacattgcgtgcagg |
27619487 |
T |
|
| Q |
212 |
taggggtgttctaaaatggacacaacattagatattccttccaactcccctcggataagttcaattgttgtttatgattttgtaggttgcacttcctctc |
311 |
Q |
| |
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|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
27619488 |
taagggtgttctaaaatggacacaacattagaaattccttccaactcccctcggataagttcaattgttgtttctgattttgtaggttgctcttcctctc |
27619587 |
T |
|
| Q |
312 |
ttagtggggaaatcagggtgaatcattgggatataaatgttgttgttgaagcgttaaagttggctatcacaatgt--aa--aagagaaatagtgtcggca |
407 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||| |
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| T |
27619588 |
ttagtggggcaatcagggtgaatcattgggatataaatgttgttgttgaagcgttaaagttggctatcacaatgtccaatgaagagaaacagtgtcggca |
27619687 |
T |
|
| Q |
408 |
tgagaagaactaccaatttgttagttctcatgatgtgctttactaggcccaacattttgagcaaggcctagttttctcgtgtaaggatcatggtaagaaa |
507 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
27619688 |
tgagaaaaactgccaatttgttagttctcatgatttgctttactgggcccaacattttgatcaaggcctagttttctcgtgtaaggatcatggtaagaaa |
27619787 |
T |
|
| Q |
508 |
ctttgctggggtttcggctttggcctggaggtcagagttttgtccctctctccgaatttcaagaagttgtctaaaaactacattgtttatgcatataaaa |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||| |
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|
| T |
27619788 |
ctttgctggggtttcggctttggcctggaggtcagagttttgtccctctctccgaatttaaagaagctgtctagaaactacattgtttatgcatataaaa |
27619887 |
T |
|
| Q |
608 |
ggaaaaaatgcagggcaatatttttagactatggtggtacaattgtacctaatgatcccattgttgcatcccccggtcctgaggtcgtatatgtgctaaa |
707 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
27619888 |
ggaaaaaatgcagggcaatatttttagactatgatgtaacaattgtacctcatgatcccattgttgcatcccccagtcctgaggtcgtatatgtgctaaa |
27619987 |
T |
|
| Q |
708 |
caaactctgcagtaatgttaataacattgtgtttattgtcagtgatcgagggataccttcattgataaatttttattatcagtgtgagaatcttggtata |
807 |
Q |
| |
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|||||| ||||||||||||||||||| |||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27619988 |
caaactttgcagtaatgttaataacactgtgattattgtcattgatcgagggatgccttcattgataaatttttattatcagtgtgagaatcttggtata |
27620087 |
T |
|
| Q |
808 |
gcagctgagcatggtggagatataaggttagtgttttgattgtgggttatttgcaattcaactg |
871 |
Q |
| |
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|||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
27620088 |
gcagttaagcatggtggagatataaggttagtgttttgattgtggattatttgcaattcaactg |
27620151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 12 - 871
Target Start/End: Original strand, 35228313 - 35229176
Alignment:
| Q |
12 |
aagcaaaggagcaggcatccacgatttccaaaagaattaatgaaaggtttggttttctaggttataaacctgtcatcatcattgaagattttgttccttt |
111 |
Q |
| |
|
||||||||||||| |||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||| |
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| T |
35228313 |
aagcaaaggagcaagcatacacgatttccaatcgaataaatgaaaggtttggttttctaggttataaacctgttgtcatcattgaaggttatgttccttt |
35228412 |
T |
|
| Q |
112 |
ccataagaaggcatcttactacgctttggccgaatgttgtattgtatatgcggagcaggatggtacaaatttggttccacacgagtacattgtgtgcagg |
211 |
Q |
| |
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| || ||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||| | |||||||||| ||||||| |
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| T |
35228413 |
cgatgagaaggcgacttactacgctttggccgaatgttgtattgtgaatgcagagcaggatggtatgaatttggttccatatgagtacattgcgtgcagg |
35228512 |
T |
|
| Q |
212 |
taggggtgttctaaaatggacacaacattagatattccttccaactcccctcggataagttcaattgttgtttatgattttgtaggttgcacttcctctc |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
35228513 |
caggggtgttctaaaatggacacaacattagatattccttccaactcccctcggataagttcaattgttgtttctgattttgtaggttgctcttcctctc |
35228612 |
T |
|
| Q |
312 |
ttagtggggaaatcagggtgaatcattgggatataaatgttgttgttgaagcgttaaagttggctatcacaatgt--aa--aagagaaatagtgtcggca |
407 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||| || || |||| |
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|
| T |
35228613 |
ttagtggggcaatcagggtgaatgattgggatataaatgctgttgttgaagcgttaaagttggctatcacaatgcccaatgaagagaaacagcgttggca |
35228712 |
T |
|
| Q |
408 |
tgagaagaactaccaatttgttagttctcatgatgtgctttactaggcccaacattttgagcaaggcctagttttctcgtgtaaggatcatggtaagaaa |
507 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35228713 |
tgagaagaactaccaatatgttagttctcatgatgttctttactgggccaaacattttgagcaaggcctagttttctcgtgtaaggatcatggtaagaaa |
35228812 |
T |
|
| Q |
508 |
ctttgctggggtttcggctttggcctggaggtcagagttttgtccctctctccgaatttcaagaagttgtctaaaaactacattgtttatgcatataaaa |
607 |
Q |
| |
|
||||||||||||||| | |||||||||||| |||||||||||||||| |||||||||||||||||| |||| | |||||| |||||| ||||||||||| |
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|
| T |
35228813 |
ctttgctggggtttcagatttggcctggagttcagagttttgtccctgtctccgaatttcaagaagctgtccagaaactatgttgtttctgcatataaaa |
35228912 |
T |
|
| Q |
608 |
ggaaaaaatgcagggcaatatttttagactatggtggtacaattgtacctaatgatcccattgttgcatcccccggtcctgaggtcgtatatgtgctaaa |
707 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| |||||||||||||| | ||||| |||||||||||||||| |||||||||||||||| ||||||||| |
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|
| T |
35228913 |
ggacaaaatgcagggcaatatttttagactatgatggtacaattgtacgtcatgattccattgttgcatcccctggtcctgaggtcgtatctgtgctaaa |
35229012 |
T |
|
| Q |
708 |
caaactctgcagtaatgttaataacattgtgtttattgtcagtgatcgagggataccttcattgataaatttttattatcagtgtgagaatcttggtata |
807 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
35229013 |
caaactctgcagtgatgttaataacactgtgtttattgtcagtggtcgagggagaccttcattgataaattttgattatcagtttgagaatcttggtata |
35229112 |
T |
|
| Q |
808 |
gcagctgagcatggtggagatataaggttagtgttttgattgtgggttatttgcaattcaactg |
871 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
35229113 |
gcagctgagcatggtggctatataaggttagtgttttgattgttggttatttgcaattcaactg |
35229176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 12 - 608
Target Start/End: Complemental strand, 27620794 - 27620194
Alignment:
| Q |
12 |
aagcaaaggagcaggcatccacgatttccaaaagaattaatgaaaggtttggttttctaggttataaacctgtcatcatcattgaagattttgttccttt |
111 |
Q |
| |
|
|||||||||||||||||| || |||||||||| |||| ||||||||||||||||||||||||||||| |||| |||||||||||| || |||||| || |
|
|
| T |
27620794 |
aagcaaaggagcaggcatacatgatttccaaaggaatacatgaaaggtttggttttctaggttataaagatgtcgtcatcattgaaggttatgttccatt |
27620695 |
T |
|
| Q |
112 |
ccataagaaggcatcttactacgctttggccgaatgttgtattgtatatgcggagcaggatggtacaaatttggttccacacgagtacattgtgtgcagg |
211 |
Q |
| |
|
|||| ||||| |||| |||||||||||| ||||||||||| | |||||||||||||||| | |||||||||| | ||||| |||||| ||||||| |
|
|
| T |
27620694 |
ccatgtgaaggaggcttaatacgctttggccaaatgttgtattttgaatgcggagcaggatggcatgaatttggttctatacgagcacattgcgtgcagg |
27620595 |
T |
|
| Q |
212 |
taggggtgttctaaaatggacacaacattagatattccttccaactcccctcggataagttcaattgttgtttatgattttgtaggttgcacttcctctc |
311 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
27620594 |
catgggtgttctaaaatggacacaacattagatattccttccaactctcctcaaataagttcaattgttgtttctgattttgtaggttgcttttcctctc |
27620495 |
T |
|
| Q |
312 |
ttagtggggaaatcagggtgaatcattgggatataaatgttgttgttgaagcgttaaagttggctatcacaatgt--aa--aagagaaatagtgtcggca |
407 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||| |
|
|
| T |
27620494 |
ttagttgggcaatcagggtgaatcattgggatataaatgttgttgttgaagcgttaaagttggctatcacaatgtccaatgaagagaaacagtgtcggca |
27620395 |
T |
|
| Q |
408 |
tgagaagaactaccaatttgttagttctcatgatgtgctttactaggcccaacattttgagcaaggcctagttttctcgtgtaaggatcatggtaagaaa |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27620394 |
tgagaagaactaccaatttgttagttctcatgatgtgctttactggacccaacattttgagcaaggcctagttttctcgtgtaagtatcatggtaagaaa |
27620295 |
T |
|
| Q |
508 |
ctttgctggggtttcggctttggcctggaggtcagagttttgtccctctctccgaatttcaagaagttgtctaaaaactacattgtttatgcatataaaa |
607 |
Q |
| |
|
|||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
27620294 |
cttttctggggtttcggctttggcctggagtttagagttttgtccctctctccgaatttcaagaagctgtctagaaactacattgtttatgcatataaaa |
27620195 |
T |
|
| Q |
608 |
g |
608 |
Q |
| |
|
| |
|
|
| T |
27620194 |
g |
27620194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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