View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18807_high_3 (Length: 653)
Name: NF18807_high_3
Description: NF18807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18807_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 565; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 9 - 634
Target Start/End: Complemental strand, 1030802 - 1030182
Alignment:
| Q |
9 |
gaagaatatcacacagattctaacattcttcataaaccaaggaaccaagtatttacaatgtataaatagaataataaggcaactacatgtattaataatc |
108 |
Q |
| |
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|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1030802 |
gaagaaaatcacacagattccaacattcttcataaaccaaggaaccaagtatttacaatgtataaatagaataataaggcaactacatgtattaataatc |
1030703 |
T |
|
| Q |
109 |
taaataatttccaataaatattgcctaacatttcgctatcaaatgtccaattttattagaaccacaaaatttgcaccaatttgatccatgcaaccgtatt |
208 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1030702 |
taaataatttccaataaatattgcctaacatttcgctatcatatgtccaatttta---gaaccacaa--tttgcaccaatttgatccatgcaaccgtatt |
1030608 |
T |
|
| Q |
209 |
agactttagaaaaaactgtatgattggacctccttgacgaacccggaccctctacaaccgtctgcagacagtcgcaccgtaaaacagctatagaggaccc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||| |
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| T |
1030607 |
agactttagaaaaaactgtatgattggacctccttgacgaacccggaccctctacaaccgtctgcagacagttgccccgtaaaatggctatagaggaccc |
1030508 |
T |
|
| Q |
309 |
aaacttgctatctgacccaaaataaaactctcaagaccatgcttcaatgtgatatttaccgcacctttctaatgccctgatccacctaactgcatcttcc |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
1030507 |
aaacttgctatctgacccaaaataaaactctcaagaccatgcttcaatgtgatatttaccgcacctttctaatgccctaatccacctaactgcatcttcc |
1030408 |
T |
|
| Q |
409 |
tttgaaacctcattttctttagatacaatttcctcaaaagctgatgttacatccgtaggcattttggttgatgaacctgctatataaacagcagctccat |
508 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1030407 |
tttgaaacctcattttctttagatacaatttcctcaaaagctgatgttacatccgtaggcattttggttgatgaacctgctatataaacagcagctccat |
1030308 |
T |
|
| Q |
509 |
cggctaataggttccaaacccttccactgtgttccttcatcttatgctgaacataaactttctcaggctggtctcgagagaaagcaacatagaaacctcc |
608 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1030307 |
cggctaataggttccaaacccttccactgtgttccttcatcttatgctgaacataaactttctcaggctggtctcgagagaaagcaacatagaaacctcc |
1030208 |
T |
|
| Q |
609 |
accatttgcttctgaaaggacaccat |
634 |
Q |
| |
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|||||||||||||||||| ||||||| |
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| T |
1030207 |
accatttgcttctgaaagtacaccat |
1030182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 337 - 634
Target Start/End: Complemental strand, 40833072 - 40832775
Alignment:
| Q |
337 |
tctcaagaccatgcttcaatgtgatatttaccgcacctttctaatgccctgatccacctaactgcatcttcctttgaaacctcattttctttagatacaa |
436 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||| |||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
40833072 |
tctcaagaccatgcttcaatgtgatatttaccacacttttctaatgccctaatccatctaactgcatcttcttttgaaacatcattttctttagatacaa |
40832973 |
T |
|
| Q |
437 |
tttcctcaaaagctgatgttacatccgtaggcattttggttgatgaacctgctatataaacagcagctccatcggctaataggttccaaacccttccact |
536 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||| || ||||||| |||||||||||||||||| |
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| T |
40832972 |
tttcctcaaaagctgatgttacatctgtaggcattttggttaatgaacctgctatataaacagaagctccctcagctaataagttccaaacccttccact |
40832873 |
T |
|
| Q |
537 |
gtgttccttcatcttatgctgaacataaactttctcaggctggtctcgagagaaagcaacatagaaacctccaccatttgcttctgaaaggacaccat |
634 |
Q |
| |
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||||||| ||| |||||||||||||||||| || || |||||||||| ||||||||||||||||||||||||||| ||| ||||||||| ||||||| |
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| T |
40832872 |
gtgttccctcaacttatgctgaacataaaccttttctggctggtctctagagaaagcaacatagaaacctccacctgttgattctgaaagcacaccat |
40832775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 23 - 242
Target Start/End: Complemental strand, 40833351 - 40833124
Alignment:
| Q |
23 |
agattctaacattcttcataaaccaaggaaccaagtatttacaatgtataaatagaataataaggc-----------aactacatgtattaataatctaa |
111 |
Q |
| |
|
|||||| |||||||||| || ||||||||| |||||||||||||||||||||||||||||||| || ||| ||||| | ||| ||||||| |
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|
| T |
40833351 |
agattccaacattcttcgtagaccaaggaagcaagtatttacaatgtataaatagaataataaagctcactttcttaaaccacatgaaataacaatctaa |
40833252 |
T |
|
| Q |
112 |
ataatttccaataaatattgcctaacatttcgctatcaaatgtccaattttattagaaccacaaaatttgcaccaatttgatccatgcaaccgtattaga |
211 |
Q |
| |
|
||||||||||||||||| | ||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||| ||| | | | || |||| |
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|
| T |
40833251 |
ataatttccaataaataccggctaacatacccctatcaaatgtccaattttg---gaaccacaaaatttgcaccaatttgatacattccatcatactaga |
40833155 |
T |
|
| Q |
212 |
ctttagaaaaaactgtatgattggacctcct |
242 |
Q |
| |
|
||||| |||||||||||| |||||||||||| |
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|
| T |
40833154 |
ctttaaaaaaaactgtattattggacctcct |
40833124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 157 - 634
Target Start/End: Complemental strand, 46554249 - 46553772
Alignment:
| Q |
157 |
aattttattagaaccacaaaatttgcaccaatttgatccatgcaaccgtattagactttagaaaaaactgtatgattggacctccttgacgaacccggac |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46554249 |
aattttattagaaccacaaaatttgcaccaatttgatccatgcaaccgtattagactttagaaaaaactgtatgattggacctccttgacgaacccggac |
46554150 |
T |
|
| Q |
257 |
cctctacaaccgtctgcagacagtcgcaccgtaaaacagctatagaggacccaaacttgctatctgacccaaaataaaactctcaagaccatgcttcaat |
356 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46554149 |
cctctacaaccgtctgcagacagttgctccgtaaaatggctatagaggacccaaacttgctatctgacccaaaataaaactctcaagaccatgcttcaat |
46554050 |
T |
|
| Q |
357 |
gtgatatttaccgcacctttctaatgccctgatccacctaactgcatcttcctttgaaacctcattttctttagatacaatttcctcaaaagctgatgtt |
456 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46554049 |
gtgatatttaccgcacctttctaatgccctaatccacctaactgcatcttcctttgaaacctcattttctttagatacaatttcctcaaaagctgatgtt |
46553950 |
T |
|
| Q |
457 |
acatccgtaggcattttggttgatgaacctgctatataaacagcagctccatcggctaataggttccaaacccttccactgtgttccttcatcttatgct |
556 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46553949 |
acatccgtaggcattttggttgatgaacctgctatataaacagcagctccatcggctaataggttccaaacccttccactgtgttccttcatcttatgct |
46553850 |
T |
|
| Q |
557 |
gaacataaactttctcaggctggtctcgagagaaagcaacatagaaacctccaccatttgcttctgaaaggacaccat |
634 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
46553849 |
gaacataaactttctcaggctggtctcgagagaaagcaacatagaaacctccaccatttgcttctgaaagtacaccat |
46553772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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