View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18807_low_11 (Length: 327)
Name: NF18807_low_11
Description: NF18807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18807_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 5674637 - 5674942
Alignment:
| Q |
1 |
agagacacatgcattcactttgtgtagatttgcaagtcaaatttggtacaaaatcttaaaatggattggtgcgtcaatggttttttcgacaaatttattc |
100 |
Q |
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| T |
5674637 |
agagacacatgcattcattttgtgtagatttgcaagtcaaatttggtacaaaatcttaaaatggattggtgcgtcgatggttttttcgacaaatttattc |
5674736 |
T |
|
| Q |
101 |
accttattgagagtatgcttagataggagaaaatcatgttcatctattttttctttgtgggtgtaattaccacttgtacttatcacaatatatgagagta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5674737 |
accttattgagagtatgcttagataggagaaaatcatgttcatctattttttct--gtgggtgtaattaccacttgtacttatcacaatatatgagagta |
5674834 |
T |
|
| Q |
201 |
gtacaccaacaaggttgcaatgcaatccaactcaagaattatattttatttttcaccaccaccctttacaatatggttcccactttaacatcgtgatgac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5674835 |
gtacaccaacaaggttgcaatgcaatccaactcaagaattatattttatttttcaccaccaccctttacaatatggttcccactttaacatcgtgatgac |
5674934 |
T |
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| Q |
301 |
ataattta |
308 |
Q |
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|||||||| |
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| T |
5674935 |
ataattta |
5674942 |
T |
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