View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18807_low_4 (Length: 626)

Name: NF18807_low_4
Description: NF18807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18807_low_4
NF18807_low_4
[»] chr1 (10 HSPs)
chr1 (292-608)||(41453458-41453772)
chr1 (177-399)||(41426407-41426628)
chr1 (180-399)||(41431800-41432019)
chr1 (186-399)||(41442407-41442620)
chr1 (232-332)||(41448905-41449006)
chr1 (19-110)||(41456820-41456911)
chr1 (294-373)||(52472986-52473066)
chr1 (187-243)||(41449170-41449226)
chr1 (485-582)||(41426235-41426332)
chr1 (293-399)||(7238212-7238327)
[»] scaffold0648 (2 HSPs)
scaffold0648 (176-399)||(5895-6117)
scaffold0648 (460-582)||(5718-5840)
[»] scaffold0274 (2 HSPs)
scaffold0274 (176-399)||(17341-17563)
scaffold0274 (460-582)||(17618-17740)
[»] chr2 (4 HSPs)
chr2 (179-397)||(33370088-33370308)
chr2 (176-395)||(33363748-33363967)
chr2 (244-399)||(5839238-5839393)
chr2 (460-577)||(33363425-33363542)
[»] chr7 (2 HSPs)
chr7 (227-399)||(7762930-7763102)
chr7 (460-525)||(7763157-7763222)
[»] chr8 (1 HSPs)
chr8 (238-393)||(21223810-21223965)
[»] chr4 (1 HSPs)
chr4 (239-367)||(1004661-1004789)


Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-119; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 292 - 608
Target Start/End: Complemental strand, 41453772 - 41453458
Alignment:
Q  292 aaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatcacagccctcaagagatccatccttgattcataaactctcacaaatattgtat 391  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  41453772 aaaaataaaagaccgtcatggtaaggagtctcttctgctccaataatcacagccctcaagagatccatccttgattcatagactctcacaaatattgtat 41453673  T
Q  392 ctgatgagtattnnnnnnnnnnnnnnnnnnnnngaagaagataagattgagaaatataccataatcatgtttcacactatggtaattaaaagttcttgat 491  Q
    |||||||| |||                      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41453672 ctgatgagcattaaaaaaagtcaaaaaaaaaaa-aagaagataagattgagaaatataccataatcatgtttcacactatggtaattaaaagttcttgat 41453574  T
Q  492 cccaatttcataacaaatatgtcgagtggacaccaacgaggaaaaatttggaaatctttcaaaaaggaagtattataaagaaaacatgccaaaaccgttt 591  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41453573 cccaatttcataacaaatatgt-gagtggacactaacgaggaaaaatttggaaatctttcaaaaaggaagtattataaagaaaacatgccaaaaccgttt 41453475  T
Q  592 cgataagacgggaacta 608  Q
    |||||||||||||||||    
T  41453474 cgataagacgggaacta 41453458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 177 - 399
Target Start/End: Complemental strand, 41426628 - 41426407
Alignment:
Q  177 catttgtcggaattgaattaaaaagagtgaacaagaaaataatgtcagctagataaagtattctcaaccacataccgggggttcattgggatatccaggg 276  Q
    |||||||||||||||||||||||||||||||||||||| |||| || || | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41426628 catttgtcggaattgaattaaaaagagtgaacaagaaa-taatatcggccaaataaagtattctcaaccacataccgggggttcattgggatatccaggg 41426530  T
Q  277 ggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatcacagccctcaagagatccatccttgattcataaactc 376  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| | ||||    
T  41426529 ggaaagtaaacatcaaaaaagaaaagactgtcatggtaaggagtcccttttgctccaataatcacagccctcatgagatccatccttgattcacagactc 41426430  T
Q  377 tcacaaatattgtatctgatgag 399  Q
    |||||||||||||||||||||||    
T  41426429 tcacaaatattgtatctgatgag 41426407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 180 - 399
Target Start/End: Complemental strand, 41432019 - 41431800
Alignment:
Q  180 ttgtcggaattgaattaaaaagagtgaacaagaaaataatgtcagctagataaagtattctcaaccacataccgggggttcattgggatatccaggggga 279  Q
    |||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||  |||||||| |||||||||| |||||||||||  ||||||     
T  41432019 ttgtcggaattgaattaaaaggagtgaacaagaaaataatgtcagtcagataaagtatcatcaaccacgtaccgggggtacattgggatatttagggggg 41431920  T
Q  280 aagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatcacagccctcaagagatccatccttgattcataaactctca 379  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  | |||||||    
T  41431919 aagtaaacatcaaaaaagaaaagaccatcatggtaaggagtcccttctgctccaataatcacagccctcatgagatccatccttgattcgaagactctca 41431820  T
Q  380 caaatattgtatctgatgag 399  Q
    ||||||||||||||||||||    
T  41431819 caaatattgtatctgatgag 41431800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 186 - 399
Target Start/End: Complemental strand, 41442620 - 41442407
Alignment:
Q  186 gaattgaattaaaaagagtgaacaagaaaataatgtcagctagataaagtattctcaaccacataccgggggttcattgggatatccagggggaaagtaa 285  Q
    ||||||||||||||||||| |||||||||| || ||| |  |||||||||||||| |||||| |||||||||| |||||||||| ||||  |||||||      
T  41442620 gaattgaattaaaaagagttaacaagaaaacaacgtctgtcagataaagtattcttaaccacgtaccgggggtacattgggatagccagttggaaagtgt 41442521  T
Q  286 acatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatcacagccctcaagagatccatccttgattcataaactctcacaaata 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  | |||||||||||||    
T  41442520 acatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatcacagctctcaagagatccatccttgattcgcagactctcacaaata 41442421  T
Q  386 ttgtatctgatgag 399  Q
    |||||| |||||||    
T  41442420 ttgtatttgatgag 41442407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 232 - 332
Target Start/End: Complemental strand, 41449006 - 41448905
Alignment:
Q  232 aagtattctcaaccacataccgggggttcattgggatatccaggggg-aaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgct 330  Q
    |||||| ||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  41449006 aagtatcctcaaccacatactgggggtacattgggatatccaggggggaaagtaaacatcaaaaaagaaaagaccgttatggtaaggagtctcttctgct 41448907  T
Q  331 cc 332  Q
    ||    
T  41448906 cc 41448905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 41456911 - 41456820
Alignment:
Q  19 agaagggagagatagggcggttgtgtaggatcagtgtagtggaatcggttgcaagttgtgaggtcgaggggatggtttagaggtgggtaggt 110  Q
    ||||||| |||| |||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  41456911 agaagggtgagagagggtggttgtgtaagatcagagtagtggaatcggttgcaagttgtgaggtcgaggggatggtttagatgtgggtaggt 41456820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 294 - 373
Target Start/End: Complemental strand, 52473066 - 52472986
Alignment:
Q  294 aaagaaaagaccgtcatgg-taaggagtcccttctgctccaataatcacagccctcaagagatccatccttgattcataaa 373  Q
    |||| |||||||||||| | |||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  52473066 aaagtaaagaccgtcattgataaggagttccatctgctccaataattacagccctcaagagatccatccttgattcataaa 52472986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 41449226 - 41449170
Alignment:
Q  187 aattgaattaaaaagagtgaacaagaaaataatgtcagctagataaagtattctcaa 243  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  41449226 aattggattaaaaagagtgaacaagaaaatattgtcagctagataaagtatcctcaa 41449170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 485 - 582
Target Start/End: Complemental strand, 41426332 - 41426235
Alignment:
Q  485 tcttgatcccaatttcataacaaatatgtcgagtggacaccaacgaggaaaaatttggaaatctttcaaaaaggaagtattataaagaaaacatgcca 582  Q
    ||||||| |||| || | ||||||||| | |||||||||||| | ||||||||||||| ||| |||||| ||||| ||||||||||||| ||| ||||    
T  41426332 tcttgattccaactttagaacaaatatatggagtggacaccaccaaggaaaaatttgggaatatttcaacaaggatgtattataaagaagacaagcca 41426235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 399
Target Start/End: Original strand, 7238212 - 7238327
Alignment:
Q  293 aaaagaaaagaccgtcatggtaaggagtcccttc---------tgctccaataatcacagccctcaagagatccatccttgattcataaactctcacaaa 383  Q
    |||||||||||||||||||||||| |||||||||         |||||||||| | ||||||| |  || || |||| |||||||||||||||  |||||    
T  7238212 aaaagaaaagaccgtcatggtaagaagtcccttcactcccttgtgctccaatagttacagcccgcgtgacattcatcattgattcataaactcgaacaaa 7238311  T
Q  384 tattgtatctgatgag 399  Q
    ||||| |||| |||||    
T  7238312 tattgaatctaatgag 7238327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0648 (Bit Score: 180; Significance: 7e-97; HSPs: 2)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 176 - 399
Target Start/End: Complemental strand, 6117 - 5895
Alignment:
Q  176 ccatttgtcggaattgaattaaaaagagtgaacaagaaaataatgtcagctagataaagtattctcaaccacataccgggggttcattgggatatccagg 275  Q
    ||||||||||||||||||||||||||||||||||||||| |||| || || | |||||||||||||||||||||||||||||||||||||||||| ||||    
T  6117 ccatttgtcggaattgaattaaaaagagtgaacaagaaa-taatatctgccaaataaagtattctcaaccacataccgggggttcattgggatattcagg 6019  T
Q  276 gggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatcacagccctcaagagatccatccttgattcataaact 375  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| | |||    
T  6018 gggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatcacagccctcatgagatccattcttgattcacagact 5919  T
Q  376 ctcacaaatattgtatctgatgag 399  Q
    ||||||||||||||||||||||||    
T  5918 ctcacaaatattgtatctgatgag 5895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0648; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 460 - 582
Target Start/End: Complemental strand, 5840 - 5718
Alignment:
Q  460 gtttcacactatggtaattaaaagttcttgatcccaatttcataacaaatatgtcgagtggacaccaacgaggaaaaatttggaaatctttcaaaaagga 559  Q
    |||||||| | ||||| ||| ||||||||||| | || || | ||||||||| | |||||||||||| | ||||||||||||| ||| |||||| |||||    
T  5840 gtttcacattttggtatttataagttcttgattcaaactttagaacaaatatatggagtggacaccaccaaggaaaaatttgggaatatttcaacaagga 5741  T
Q  560 agtattataaagaaaacatgcca 582  Q
     ||||||||||||||||| ||||    
T  5740 tgtattataaagaaaacaagcca 5718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274 (Bit Score: 180; Significance: 7e-97; HSPs: 2)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 176 - 399
Target Start/End: Original strand, 17341 - 17563
Alignment:
Q  176 ccatttgtcggaattgaattaaaaagagtgaacaagaaaataatgtcagctagataaagtattctcaaccacataccgggggttcattgggatatccagg 275  Q
    ||||||||||||||||||||||||||||||||||||||| |||| || || | |||||||||||||||||||||||||||||||||||||||||| ||||    
T  17341 ccatttgtcggaattgaattaaaaagagtgaacaagaaa-taatatctgccaaataaagtattctcaaccacataccgggggttcattgggatattcagg 17439  T
Q  276 gggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatcacagccctcaagagatccatccttgattcataaact 375  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| | |||    
T  17440 gggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatcacagccctcatgagatccattcttgattcacagact 17539  T
Q  376 ctcacaaatattgtatctgatgag 399  Q
    ||||||||||||||||||||||||    
T  17540 ctcacaaatattgtatctgatgag 17563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 460 - 582
Target Start/End: Original strand, 17618 - 17740
Alignment:
Q  460 gtttcacactatggtaattaaaagttcttgatcccaatttcataacaaatatgtcgagtggacaccaacgaggaaaaatttggaaatctttcaaaaagga 559  Q
    |||||||| | ||||| ||| ||||||||||| | || || | ||||||||| | |||||||||||| | ||||||||||||| ||| |||||| |||||    
T  17618 gtttcacattttggtatttataagttcttgattcaaactttagaacaaatatatggagtggacaccaccaaggaaaaatttgggaatatttcaacaagga 17717  T
Q  560 agtattataaagaaaacatgcca 582  Q
     ||||||||||||||||| ||||    
T  17718 tgtattataaagaaaacaagcca 17740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 162; Significance: 4e-86; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 179 - 397
Target Start/End: Complemental strand, 33370308 - 33370088
Alignment:
Q  179 tttgtcggaattgaattaaaaagagtgaacaagaaaataatgtcagctagataaagtattctcaaccacataccggggg--ttcattgggatatccaggg 276  Q
    ||||||||||||||||| ||| |||||||| ||||||||| |||||  ||||||||||| |||||||||||||||||||  | |||||||||||||||||    
T  33370308 tttgtcggaattgaatttaaatgagtgaactagaaaataacgtcagtcagataaagtatcctcaaccacataccgggggggtccattgggatatccaggg 33370209  T
Q  277 ggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatcacagccctcaagagatccatccttgattcataaactc 376  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||    
T  33370208 ggaaagtaaacatcaaaaaagaaaagaccatcatggtaaggagtcccttctgctccaataatcacagccctcatgagatccatccttgattcgtagactc 33370109  T
Q  377 tcacaaatattgtatctgatg 397  Q
    |||||||||||||||||||||    
T  33370108 tcacaaatattgtatctgatg 33370088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 176 - 395
Target Start/End: Complemental strand, 33363967 - 33363748
Alignment:
Q  176 ccatttgtcggaattgaattaaaaagagtgaacaagaaaataatgtcagctagataaagtattctcaaccacataccgggggttcattgggatatccagg 275  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||  |||    
T  33363967 ccatttgtcagaattgaattaaaaagagtgcacaagaaaataatgtcagctaaataaagtattctcaaccacgtaccgggggtacattgggatatttagg 33363868  T
Q  276 gggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatcacagccctcaagagatccatccttgattcataaact 375  Q
    ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||  | | |    
T  33363867 ggggaagtaaacatcaaaaaagaaaagaccatcatggtaaggagtcccttctgctccaataatcacagctctcatgagatccatccttgattcgaagatt 33363768  T
Q  376 ctcacaaatattgtatctga 395  Q
    ||||||||||||||||||||    
T  33363767 ctcacaaatattgtatctga 33363748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 244 - 399
Target Start/End: Original strand, 5839238 - 5839393
Alignment:
Q  244 ccacataccgggggttcattgggatatccagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataatcacag 343  Q
    ||||||||||| ||| |||||||| | |||   || ||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  5839238 ccacataccggcggtacattgggaaagccaccaggtaagtaaagatcgaaaaagaaaagaccgtcatggtaaggagtcccgtctgctccaataattacag 5839337  T
Q  344 ccctcaagagatccatccttgattcataaactctcacaaatattgtatctgatgag 399  Q
    |||||| ||||||||| ||||||||||||||||  |||||||||| ||||||||||    
T  5839338 ccctcatgagatccattcttgattcataaactcgaacaaatattgaatctgatgag 5839393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 460 - 577
Target Start/End: Complemental strand, 33363542 - 33363425
Alignment:
Q  460 gtttcacactatggtaattaaaagttcttgatcccaatttcataacaaatatgtcgagtggacaccaacgaggaaaaatttggaaatctttcaaaaagga 559  Q
    |||| ||| ||||| | ||| ||||||||||| ||||||||| ||||||||| | | |||||| ||| |||||||| |||||| |||||||||| |||||    
T  33363542 gtttgacattatggcatttataagttcttgattccaatttcagaacaaatatatggtgtggacgccaccgaggaaatatttggcaatctttcaacaagga 33363443  T
Q  560 agtattataaagaaaaca 577  Q
      ||| || |||||||||    
T  33363442 tatatcatgaagaaaaca 33363425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 121; Significance: 1e-61; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 227 - 399
Target Start/End: Original strand, 7762930 - 7763102
Alignment:
Q  227 agataaagtattctcaaccacataccgggggttcattgggatatccagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttc 326  Q
    |||||||||| | |||||||| |||||||||||||| ||||||| ||||||||||||| | |||||||||||||||||| |||||||||||||||||||     
T  7762930 agataaagtagtttcaaccacgtaccgggggttcatcgggatattcagggggaaagtataaatcaaaaaagaaaagaccatcatggtaaggagtcccttg 7763029  T
Q  327 tgctccaataatcacagccctcaagagatccatccttgattcataaactctcacaaatattgtatctgatgag 399  Q
    |||||||||||||||||| |||| |||||||||||||||||| || |||||||||||||||||||||||||||    
T  7763030 tgctccaataatcacagctctcatgagatccatccttgattcgtagactctcacaaatattgtatctgatgag 7763102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 460 - 525
Target Start/End: Original strand, 7763157 - 7763222
Alignment:
Q  460 gtttcacactatggtaattaaaagttcttgatcccaatttcataacaaatatgtcgagtggacacc 525  Q
    |||||||| ||||||| ||| | ||||||||| ||||||||| ||||||||| | |||||||||||    
T  7763157 gtttcacattatggtatttatatgttcttgattccaatttcagaacaaatatatggagtggacacc 7763222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 5e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 238 - 393
Target Start/End: Original strand, 21223810 - 21223965
Alignment:
Q  238 tctcaaccacataccgggggttcattgggatatccagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataa 337  Q
    |||||||  |||||||| ||| |||||||| | |||  ||||||| ||| |||||||||||| || || ||||| ||||| || || |||||||||||||    
T  21223810 tctcaacagcataccggaggtacattgggaaagccactgggaaagaaaaaatcaaaaaagaataggccatcatgataaggggttccctctgctccaataa 21223909  T
Q  338 tcacagccctcaagagatccatccttgattcataaactctcacaaatattgtatct 393  Q
    ||||||||||||| ||||| || ||||||||||||||||| |||||||||| ||||    
T  21223910 tcacagccctcaacagatctattcttgattcataaactctgacaaatattgaatct 21223965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 239 - 367
Target Start/End: Complemental strand, 1004789 - 1004661
Alignment:
Q  239 ctcaaccacataccgggggttcattgggatatccagggggaaagtaaacatcaaaaaagaaaagaccgtcatggtaaggagtcccttctgctccaataat 338  Q
    |||||| ||||||||||||| || |||||||   |   || ||||||| ||||||||||||||||||||  |||||||||||||||| || |||||||||    
T  1004789 ctcaacgacataccgggggtacaatgggatagttactagggaagtaaaaatcaaaaaagaaaagaccgtgctggtaaggagtcccttttggtccaataat 1004690  T
Q  339 cacagccctcaagagatccatccttgatt 367  Q
     ||||||||||| |||| |||| ||||||    
T  1004689 tacagccctcaacagattcatctttgatt 1004661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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