View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18807_low_5 (Length: 595)
Name: NF18807_low_5
Description: NF18807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18807_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 118 - 580
Target Start/End: Complemental strand, 41825710 - 41825243
Alignment:
| Q |
118 |
tctttgatcaaggggtttctaggaggatgaatgttgatttttaaagcttttgggattacaaattccctcatattgctggaagcaacaagtttaatt-gtt |
216 |
Q |
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| T |
41825710 |
tctttgatcaaggggtttctaggaggatgaatgttgatttttaaagcttttgggattacaaattccctcatattgctggaagcaataagtttaatttgtt |
41825611 |
T |
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| Q |
217 |
acctgataaagtgacttttgaaatgatcatactaatggttgtcttccatagaatttgttaatcctgaaacatgga---ttggtttcttgcgcaccaaatc |
313 |
Q |
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| T |
41825610 |
acctgataaagtgacttttgaaatgatcatactaatggttgtcttccatagaatttgtttgtcctgaaacttggaatattggtttcttgcgcaccaaatc |
41825511 |
T |
|
| Q |
314 |
atgttt-aagatgttgatgatagaagctttaatcacaagcttacattgaggagtccattgcctctcacaaactgaccaaatgtcttcaacagaggtgaat |
412 |
Q |
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|||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
41825510 |
atgttttaagatgttgatgatacaagctttaatcagaagcttacattgaggagtccactgcctctcacaaactgaccaaatgtcttcaacagaggtgaat |
41825411 |
T |
|
| Q |
413 |
tgaatggtaacatgcacaacattagaaatgtggcagtaagaatcaacaatgaaatcacaaactatggtgagatgatagactacatagggaggaaattgaa |
512 |
Q |
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| T |
41825410 |
tgaatggtaacatgcacaacattagaaatgtggcagtaagaatcaacaatgaaatcacaaactatggtgagatgatagactacatagggaggaaattgaa |
41825311 |
T |
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| Q |
513 |
ggactgatgcaataaagattaaaggcccaattccaacttgaaattgattaacttttcattgcctatgt |
580 |
Q |
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| T |
41825310 |
ggactgatgcaataaagattaaaggcccaattccaacttgaaattgattaacttttcattgcctatgt |
41825243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 10 - 127
Target Start/End: Complemental strand, 41826538 - 41826421
Alignment:
| Q |
10 |
ttatactataacattaactccaacatatgaagcattgggtggaattttttgtcactgcaccatatgtattgacatttatccaattgacaagagggggtcc |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41826538 |
ttatactataacattaactccaacatatgaagcattgggtggaattttttgtcactgcaccatatgtattgacatttatccaattgacaagagggggtcc |
41826439 |
T |
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| Q |
110 |
agagaaattctttgatca |
127 |
Q |
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| T |
41826438 |
agagaaattctttgatca |
41826421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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