View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18807_low_7 (Length: 475)
Name: NF18807_low_7
Description: NF18807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18807_low_7 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 6 - 475
Target Start/End: Original strand, 43102196 - 43102665
Alignment:
| Q |
6 |
aatgaatgaagtagtttgaattagaatcccgatagaagcaatggttacggtggggtccacaagtaaaccacataaaatgatcattacttcataccaccac |
105 |
Q |
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| T |
43102196 |
aatgaatgaagtagtttgaattagaatcccgatagaagcaatggtaacggtggggtccacaagtaaaccacataaaatgatcattacttcataccaccac |
43102295 |
T |
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| Q |
106 |
cattccaaacaaacggaaacgcagcttggcgtggcaagtcggagtaaaggcttccagccggtgagacactcctggcttggtgctgtccaagttgtgcggt |
205 |
Q |
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| T |
43102296 |
cattccaaacaaacggaaacgcagcttggcgtggcaagtcggagtaaaggcttccagccggtgagacactcctgacttggtgctgtccaagttgtgcggt |
43102395 |
T |
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| Q |
206 |
gtaagcccgttaaccaaacataagcgatgaggaacaacacaatgaagaggttggaggctgcagaggcagctggaactccggtgaaaccgaagtgaaagac |
305 |
Q |
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| T |
43102396 |
gtaagcccgttaaccaaacataagcgatgaggaacaatacaatgaagaggttggaggctgcagaggcagctgggactccggtgaaaccgaagtgaaagac |
43102495 |
T |
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| Q |
306 |
aaacaagtaatttagaggaagatggaggagagtgccagcaagtgaggctaatgtaactgggcgagtgattccctgtgcacgaaggtaaatacgtataggg |
405 |
Q |
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| T |
43102496 |
aaacaagtaatttagaggaagatggaggagagtgccagcaagtgaggctaatgtaactgggcgagtgattccctgtgcacgaaggtaaatacgtataggg |
43102595 |
T |
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| Q |
406 |
tggatgaatgaatttgtgatgagatcagggagagagaatattagagatgtgtgagccatggctgtgatct |
475 |
Q |
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| T |
43102596 |
tggatgaatgaatttgtgatgagatcagggagagagaatattagatatgtgtgagccatggctgtgatct |
43102665 |
T |
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Target: scaffold0039 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 134
Target Start/End: Complemental strand, 24282 - 24241
Alignment:
| Q |
93 |
ttcataccaccaccattccaaacaaacggaaacgcagcttgg |
134 |
Q |
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| T |
24282 |
ttcataccaccaccattccaagcagacagaaacgcagcttgg |
24241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 51875031 - 51874979
Alignment:
| Q |
73 |
ccacataaaatgatcattacttcataccaccaccattccaaacaaacggaaac |
125 |
Q |
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| T |
51875031 |
ccacacaaaattatcatgagttcataccaccaccattctaaacaaacagaaac |
51874979 |
T |
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