View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18807_low_8 (Length: 453)
Name: NF18807_low_8
Description: NF18807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18807_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Original strand, 35481508 - 35481942
Alignment:
| Q |
1 |
cacctccctcttactcctatcagcaaccaccaaaataggctcttccttacaccacctattattagccttccatggcaaaactctcgcatccaaaaacgac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35481508 |
cacctccctcttactcctatcagcaaccaccaaaataggctcttccttacaccacctattattagccttccatggcaaaactctcgcatccaaaaacgac |
35481607 |
T |
|
| Q |
101 |
acaacaacgcctttccctaaattaaccaccggtccccaagccggtaacaccacccatttctcccaccctttctctgccaccacaataccaaactcccctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35481608 |
acaacaacgcctttccctaaattaaccaccggtccccaagccggtaacaccacccatttctcccaccctttctccgccaccacaataccaaactcccctt |
35481707 |
T |
|
| Q |
201 |
cctttcttatctcagaaggtgcttccataatcaccctttctccttcctcagctttacacacgggcaaaacaaccaccgaggtcgcctcagctacttcacc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35481708 |
cctttcttatctcagaaggtgcttccataatcaccctttctccttcctcagctttacacacgggcaaaacaaccaccgaggtcgcctcagctacttcacc |
35481807 |
T |
|
| Q |
301 |
aatcttcaatctcaccacattaacaggtacttttaatacaacatcttcaacttcctcctcttcagcctttccatttagctcctccaaaatcacgtttcta |
400 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
35481808 |
aatcttcaatctcaccacattaacaggtacttttaatacaacatcttcaaccttctcctcttcagcctttccattcaactcctccaaaatcacgtttcta |
35481907 |
T |
|
| Q |
401 |
gctttatcagactctacagcactcaacgcttgttg |
435 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
35481908 |
gctttatcagactctacagcactcaacgcttgttg |
35481942 |
T |
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