View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18807_low_9 (Length: 430)
Name: NF18807_low_9
Description: NF18807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18807_low_9 |
 | |
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| [»] scaffold0425 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 7747721 - 7747305
Alignment:
| Q |
1 |
tgaaactaagaacagtgacatattttcaaatttcaacaaaggtaggagctaaaagatatcgaacggaaatgatttgatattaacattaacaacaatacaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7747721 |
tgaaactaagaacagtgacatattttcaaatttcaacaaaggtgggagctaaacgttattgaacggaaatgatttgatattaacattaacaacaatacaa |
7747622 |
T |
|
| Q |
101 |
gaaggttatannnnnnnacttctttgaaacactttgaaaatccagtaaacgaagacataaaatcttctaattgtgactttcatgttccagcaagtatatc |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
7747621 |
gaaggttatatttttttacttctttgaaacactttgaaaatccagtaaacgaagacataaaatcttctaattgtgactttcatattccagcaagtatatc |
7747522 |
T |
|
| Q |
201 |
aagaatcgtctcctgaatttccgggccgatacagaaaagagtgatctatcactctagcagacaagaaaacaatcagttttttcgttaaacttgtatttac |
300 |
Q |
| |
|
||||||||| |||| |||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
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|
| T |
7747521 |
aagaatcgtgtcctaaatttcggggccgatagagaaaagagtgatctatcactctagcagacaagcaaacaatcagtttcttcgttaaacttgtatttac |
7747422 |
T |
|
| Q |
301 |
gactatatcaatgcaataggttagttgcttctatcctcccattgtaactccaaggttccttcacaaaccagtcatttcaagccttctaatccttttctcg |
400 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7747421 |
gactatatcaatgcaatagattagttgcttctatcctcccattgtaactccaaggttccttcacaaaccagtcatttcaagccttctaatccttttctcg |
7747322 |
T |
|
| Q |
401 |
agcttctcatgcctttc |
417 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
7747321 |
agcttctcatgcctttc |
7747305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 21 - 417
Target Start/End: Original strand, 6725830 - 6726227
Alignment:
| Q |
21 |
tattttcaaatttcaacaaaggtaggagctaaaagatatcgaacggaaatgatttgatattaacattaacaacaatacaagaaggttatannnnnnnact |
120 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||| |||| | || ||||||| ||||||| ||||||||||||||| |||||||| ||| ||| |
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|
| T |
6725830 |
tattttcatatttcaacaaaggtgggagctaaaaaatattgtacagaaatgaattgatatgaacattaacaacaattcaagaaggatatgttgttttact |
6725929 |
T |
|
| Q |
121 |
tctttgaaacactttgaaaatccagtaaacgaagacataaaatcttctaattgtgactttcatgttccagcaagtatatcaagaatcgtctcctgaattt |
220 |
Q |
| |
|
|||||||||||||||||||||||| |||| || ||||||||||||||||| | || ||| ||||| || |||||| || |||| |||||| ||||| |
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|
| T |
6725930 |
tctttgaaacactttgaaaatccaaaaaacaaaaacataaaatcttctaatggcgatcctcaaattccaccatgtatatgaataatcatctcctaaattt |
6726029 |
T |
|
| Q |
221 |
ccgggccgatacagaaaagagtgatctatcactctagcagacaagaaaacaatcagttttttcgttaaacttgtatttacgactatatcaatgcaatagg |
320 |
Q |
| |
|
|| ||||||||||||||| |||| ||| ||| || | |||||||| ||||||||| || ||| ||||||||||| || ||||||||| |||||||| |
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|
| T |
6726030 |
ccaggccgatacagaaaacagtggtctgtcattccaacagacaagcaaacaatcatgttcttctttaaacttgtacttgtgactatatcgctgcaataga |
6726129 |
T |
|
| Q |
321 |
ttagttgcttctatcctcccattgtaactccaaggttccttcacaaa-ccagtcatttcaagccttctaatccttttctcgagcttctcatgcctttc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
6726130 |
ttagttgcttctatcctcccattgtaactcaaaggcaccttcacaaatccagtcatttcaagccttcgaatccatttctcgagcttctcatgcctttc |
6726227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 21 - 417
Target Start/End: Original strand, 6412534 - 6412931
Alignment:
| Q |
21 |
tattttcaaatttcaacaaaggtaggagctaaaagatatcgaacggaaatgatttgatattaacattaacaacaatacaagaaggttatannnnnnnact |
120 |
Q |
| |
|
|||||||| |||||||| ||||| |||||||||| ||| | | ||||||| ||||||||||||||||||||||| |||||||| ||| ||| |
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|
| T |
6412534 |
tattttcatatttcaacgaaggtgggagctaaaaattattgtgcagaaatgaattgatattaacattaacaacaattcaagaaggatatgttggtttact |
6412633 |
T |
|
| Q |
121 |
tctttgaaacactttgaaaatccagtaaacgaagacataaaatcttctaattgtgactttcatgttccagcaagtatatcaagaatcgtctcctgaattt |
220 |
Q |
| |
|
||||||||| ||||||||||||||| |||| || ||||||||||||||||| | || ||| ||||| || |||||| || ||| |||||| ||||| |
|
|
| T |
6412634 |
tctttgaaatactttgaaaatccagaaaacaaaaacataaaatcttctaatggcgatcctcaaattccaccatgtatatgaaacatcatctcctaaattt |
6412733 |
T |
|
| Q |
221 |
ccgggccgatacagaaaagagtgatctatcactctagcagacaagaaaacaatcagttttttcgttaaacttgtatttacgactatatcaatgcaatagg |
320 |
Q |
| |
|
|| ||||||||||||||| |||| ||| |||||| |||||||||| ||||||||| || ||| ||||||||||| || ||||||||| |||||||| |
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|
| T |
6412734 |
ccaggccgatacagaaaacagtggtctgtcactccagcagacaagcaaacaatcatgttcttctttaaacttgtacttgtgactatatcgctgcaataga |
6412833 |
T |
|
| Q |
321 |
ttagttgcttctatcctcccattgtaactccaaggttccttcacaaa-ccagtcatttcaagccttctaatccttttctcgagcttctcatgcctttc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||| |||| ||||||||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
6412834 |
ttagttgcttctatcctcccattgtaactcaaaggtaccttctcaaatccagtcatttcaagccttcgaatccatttctcgagcttctcatgcctttc |
6412931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 22 - 417
Target Start/End: Original strand, 6858591 - 6858987
Alignment:
| Q |
22 |
attttcaaatttcaacaaaggtaggagctaaaagatatcgaacggaaatgatttgatattaacattaacaacaatacaagaaggttatannnnnnnactt |
121 |
Q |
| |
|
||||||| |||||||||||||| |||||||||| ||| || ||||| | ||||||||||||||||||||||||||| |||| ||| |||| |
|
|
| T |
6858591 |
attttcatatttcaacaaaggtgggagctaaaatttattatacagaaataaattgatattaacattaacaacaatacaataaggatatgttgttttactt |
6858690 |
T |
|
| Q |
122 |
ctttgaaacactttgaaaatccagtaaacgaagacataaaatcttctaattgtgactttcatgttccagcaagtatatcaagaatcgtctcctgaatttc |
221 |
Q |
| |
|
||||||||||||| ||||||||| ||| || |||| |||||||||| | |||||||||| |||| ||| |||||||||||||| || ||| |||||| |
|
|
| T |
6858691 |
ctttgaaacacttataaaatccagaaaataaaaacatttaatcttctaactttgactttcatattccggcatgtatatcaagaatcatcacctaaatttc |
6858790 |
T |
|
| Q |
222 |
cgggccgatacagaaaagagtgatctatcactctagcagacaagaaaacaatcagttttttcgttaaacttgtatttacgactatatcaatgcaataggt |
321 |
Q |
| |
|
| ||||||||||||||| |||| ||| |||||| | || ||||| ||||||||| ||| ||| ||||||||||||||| ||||||||| |||||||| | |
|
|
| T |
6858791 |
caggccgatacagaaaaaagtggtctgtcactccaacaaacaagtaaacaatcattttcttctttaaacttgtatttatgactatatcgctgcaatagat |
6858890 |
T |
|
| Q |
322 |
tagttgcttctatcctcccattgtaactccaaggttccttcacaaa-ccagtcatttcaagccttctaatccttttctcgagcttctcatgcctttc |
417 |
Q |
| |
|
| || |||||||||||||||||||||||| ||||| |||||||||| |||| ||||| ||| ||| ||||| || ||||||||||||||||||||| |
|
|
| T |
6858891 |
ttgtcgcttctatcctcccattgtaactcaaaggtaccttcacaaatccagccattttaagtctttgaatccattgctcgagcttctcatgcctttc |
6858987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 204 - 416
Target Start/End: Original strand, 6595165 - 6595378
Alignment:
| Q |
204 |
aatcgtctcctgaatttccgggccgatacagaaaagagtgatctatcactctagcagacaagaaaacaatcagttttttcgttaaacttgtatttacgac |
303 |
Q |
| |
|
|||| |||||| ||||||| ||| | ||||||||| |||| ||| |||||| |||||||||| ||||||||| || ||| ||||||||||| || ||| |
|
|
| T |
6595165 |
aatcatctcctaaatttccaggctggtacagaaaacagtggtctgtcactccagcagacaagcaaacaatcatgttcttctttaaacttgtacttgtgac |
6595264 |
T |
|
| Q |
304 |
tatatcaatgcaataggttagttgcttctatcctcccattgtaactccaaggttccttcacaaa-ccagtcatttcaagccttctaatccttttctcgag |
402 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
6595265 |
tatatcgctgcaatagattagttgcttctatcctcccattgtaactcaaagacaccttcacaaatccagtcatttcaagccttcgaatccatttctcgag |
6595364 |
T |
|
| Q |
403 |
cttctcatgccttt |
416 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
6595365 |
cttctcatgccttt |
6595378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 209 - 417
Target Start/End: Original strand, 8572570 - 8572783
Alignment:
| Q |
209 |
tctcctgaatttccgggccgatacagaaaagagtgatctatcactctagcagacaagaaaacaatcagttttttcgttaaacttgtatttacgactatat |
308 |
Q |
| |
|
|||||| ||||||| ||| |||||||||||||||| |||||||||| |||||||||| ||||||||| | | ||| |||||||||||||| |||||||| |
|
|
| T |
8572570 |
tctcctaaatttccaggcggatacagaaaagagtggtctatcactccagcagacaagcaaacaatcattctcttctttaaacttgtatttgtgactatat |
8572669 |
T |
|
| Q |
309 |
caatgcaatag----gttagttgcttctatcctcccattgtaactccaaggttccttcacaaa-ccagtcatttcaagccttctaatccttttctcgagc |
403 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||||||| || ||||| |||||||||| |||||||||||||||||| |||| |||||| ||| |
|
|
| T |
8572670 |
cgctgcaatagattaattagttgcttctatcctcccattgtaagtcaaaggtaccttcacaaatccagtcatttcaagcctttgaatctatttctcaagc |
8572769 |
T |
|
| Q |
404 |
ttctcatgcctttc |
417 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
8572770 |
ttctcatgtctttc |
8572783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 245 - 391
Target Start/End: Complemental strand, 6255460 - 6255311
Alignment:
| Q |
245 |
tctatcactctagcagacaagaaaacaatcagttttttcgttaaacttgtatttacgactatatcaa--tgcaataggttagttgcttctatcctcccat |
342 |
Q |
| |
|
|||||||||| | |||||||| ||||||||| ||| ||| |||||||||| |||| |||||||| |||||||| || |||||||| || ||||| | |
|
|
| T |
6255460 |
tctatcactccaacagacaagcaaacaatcattttcttctttaaacttgtttttatgactatatattgctgcaatagatttgttgcttcgattctcccgt |
6255361 |
T |
|
| Q |
343 |
tgtaactccaaggttccttcacaaacc-agtcatttcaagccttctaatc |
391 |
Q |
| |
|
|||||||| ||||| ||||||| | || | ||||||||||||||||||| |
|
|
| T |
6255360 |
tgtaactcaaaggtgccttcactaccccaaccatttcaagccttctaatc |
6255311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 22 - 275
Target Start/End: Original strand, 15226 - 15479
Alignment:
| Q |
22 |
attttcaaatttcaacaaaggtaggagctaaaagatatcgaacggaaatgatttgatattaacattaacaacaatacaagaaggttatannnnnnnactt |
121 |
Q |
| |
|
||||||| |||||||||||||| ||| |||||| ||| | || ||||| | ||||||||||||||||||||||||||| |||| ||| |||| |
|
|
| T |
15226 |
attttcatatttcaacaaaggtgggaactaaaatttattgtacagaaataaattgatattaacattaacaacaatacaataaggatatgttgttttactt |
15325 |
T |
|
| Q |
122 |
ctttgaaacactttgaaaatccagtaaacgaagacataaaatcttctaattgtgactttcatgttccagcaagtatatcaagaatcgtctcctgaatttc |
221 |
Q |
| |
|
||||||||||||| ||||||||| ||| || |||| |||||||||| | |||||||||| |||| ||| |||||||||||||| || ||| |||||| |
|
|
| T |
15326 |
ctttgaaacacttataaaatccagaaaataaaaacatttaatcttctaactttgactttcatattccggcatgtatatcaagaatcatcacctaaatttc |
15425 |
T |
|
| Q |
222 |
cgggccgatacagaaaagagtgatctatcactctagcagacaagaaaacaatca |
275 |
Q |
| |
|
| ||||||||||||||| |||| ||| |||||| | || | ||| ||||||||| |
|
|
| T |
15426 |
caggccgatacagaaaaaagtggtctgtcactccaacaaagaagtaaacaatca |
15479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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