View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18808_high_11 (Length: 241)
Name: NF18808_high_11
Description: NF18808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18808_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 31027877 - 31028111
Alignment:
| Q |
1 |
taaataaattgatataaacatttatctttttaacatcaaaaggagnnnnnnnnntatgattaagtttctcnnnnnnntttatgctacgatcttcttgatt |
100 |
Q |
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| T |
31027877 |
taaataaattgatataaacatttatctttttaacatcaaaaggagaaaaaaaaatatgattaagtttctcaaatttttttatgctacgatcatcttgatt |
31027976 |
T |
|
| Q |
101 |
tccatattttttgttgtaagggatgaaagctctggtatgacctttcactaatccttttttgctttatcttatacgtacatttttgtcctccatcgtttat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
31027977 |
tccatattttttgttgtaagggatgaaagctctggtatgacctttcactaatccttttttgctttatcttatacgtacatttttatcctccat-gtttat |
31028075 |
T |
|
| Q |
201 |
actgataacattttgttatacattacagcattacct |
236 |
Q |
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||||||||||||||||||||||||||| |||||||| |
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| T |
31028076 |
actgataacattttgttatacattacaacattacct |
31028111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 31033029 - 31032965
Alignment:
| Q |
94 |
cttgatttccatattttttgttgtaagggatgaaagctctggtatgacctttcactaatcctttt |
158 |
Q |
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||||||||||| |||||||||||||||| | | | ||| ||||||||||||| || |||||||| |
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| T |
31033029 |
cttgatttccacattttttgttgtaaggcacggtaactcaggtatgacctttctctcatcctttt |
31032965 |
T |
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