View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18808_high_12 (Length: 238)
Name: NF18808_high_12
Description: NF18808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18808_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 3e-87; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 30715847 - 30715625
Alignment:
| Q |
1 |
ttaattgattaatatatcaaatgattctttccctggcttctcctatgaattccactatacaagttttgatgaagcggcaccgccatcatctactgccatt |
100 |
Q |
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||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
30715847 |
ttaattgattaatatatcaaacgattctttccctagcttctcctatgaattccactatacaagttttgatgaagcggcaccgccatcatctaccgccatt |
30715748 |
T |
|
| Q |
101 |
attagatgcaaggtctcaatg-nnnnnnnnaagatttcaatgcttataattgggtttattgagtggccaattctttgcgaggataatgattttagtattt |
199 |
Q |
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|||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
30715747 |
attagatgcaagatctcaatgtatttttttaagagttcaatgcttataattgggtttattgagtggccaattctttgcgaggataatgatttcagtattt |
30715648 |
T |
|
| Q |
200 |
tgccattaagatacacaaaattg |
222 |
Q |
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| ||||||||||||||||||||| |
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| T |
30715647 |
tcccattaagatacacaaaattg |
30715625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 121
Target Start/End: Original strand, 23617032 - 23617103
Alignment:
| Q |
50 |
ttccactatacaagttttgatgaagcggcaccgccatcatctactgccattattagatgcaaggtctcaatg |
121 |
Q |
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|||| ||||| ||||||||||||||||||||||||||||||| || ||||||||| ||||| || |||||| |
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| T |
23617032 |
ttccgctatataagttttgatgaagcggcaccgccatcatctcatgtcattattaggtgcaacgtatcaatg |
23617103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 121
Target Start/End: Original strand, 23648373 - 23648444
Alignment:
| Q |
50 |
ttccactatacaagttttgatgaagcggcaccgccatcatctactgccattattagatgcaaggtctcaatg |
121 |
Q |
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| T |
23648373 |
ttccgctatataagttttgatgaagcggcaccgccatcatctcatgtcattattaggtgcaacgtatcaatg |
23648444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 23622740 - 23622801
Alignment:
| Q |
50 |
ttccactatacaagttttgatgaagcggcaccgccatcatctactgccattattagatgcaa |
111 |
Q |
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|||||||||| | ||||||||||||| ||||||||||||||| || ||||||||| ||||| |
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|
| T |
23622740 |
ttccactatataggttttgatgaagcagcaccgccatcatctcatgtcattattaggtgcaa |
23622801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 121
Target Start/End: Original strand, 23733689 - 23733760
Alignment:
| Q |
50 |
ttccactatacaagttttgatgaagcggcaccgccatcatctactgccattattagatgcaaggtctcaatg |
121 |
Q |
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|||| ||||| | ||||||||||||||||||||| ||||||| || ||||||||| ||||| || |||||| |
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| T |
23733689 |
ttccgctatataggttttgatgaagcggcaccgctatcatctcatgtcattattaggtgcaacgtatcaatg |
23733760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 121
Target Start/End: Original strand, 23740881 - 23740952
Alignment:
| Q |
50 |
ttccactatacaagttttgatgaagcggcaccgccatcatctactgccattattagatgcaaggtctcaatg |
121 |
Q |
| |
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|||| ||||| | ||||||||||||||||||||| ||||||| || ||||||||| ||||| || |||||| |
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| T |
23740881 |
ttccgctatataggttttgatgaagcggcaccgctatcatctcatgtcattattaggtgcaacgtatcaatg |
23740952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 51707994 - 51707772
Alignment:
| Q |
1 |
ttaattgattaatatatcaaatgattctttccctggcttctcctatgaattccactatacaagttttgatgaagcggcaccgccatcatctactgccatt |
100 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||| |||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
51707994 |
ttaattgactaatatatcaaacgattctttccctagcttcttctatgaagtccactatacaagttttgatgaagtggcaccgccatcatctactgccatt |
51707895 |
T |
|
| Q |
101 |
attagatgcaaggtctcaatg-nnnnnnnnaagatttcaatgcttataattgggtttattgagtggccaattctttgcgaggataatgattttagtattt |
199 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
51707894 |
attagatgcaagatctcaatgtttttttttaagatttcaatgcttataattggatttattgagtggccaattctttgtgaggataatgatttcagtattt |
51707795 |
T |
|
| Q |
200 |
tgccattaagatacacaaaattg |
222 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
51707794 |
tgccattaagatacacaaaattg |
51707772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 30058619 - 30058388
Alignment:
| Q |
1 |
ttaattgattaatatatcaaatgattctttccctggcttctcctatgaattccactatacaagttttgatgaagcggcaccgccatcatctactgccatt |
100 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||| | || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
30058619 |
ttaactgattaatatatcaaacgattctttccctagtttttcctatgaattccactatacaagttttgatgaagcggcaccaccatcatctactgccatt |
30058520 |
T |
|
| Q |
101 |
attagatgcaaggtctcaatg----------nnnnnnnnaagatttcaatgcttataattgggtttattgagtggccaattctttgcgaggataatgatt |
190 |
Q |
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|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
30058519 |
attagatgcaagatctcaatgttttttttttttttttttaagatttcaatgcttataattgggtttattgagtggccaattctttgggaggataatgatt |
30058420 |
T |
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| Q |
191 |
ttagtattttgccattaagatacacaaaattg |
222 |
Q |
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| | ||||||||||||||| |||||||||||| |
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| T |
30058419 |
tcaatattttgccattaaggtacacaaaattg |
30058388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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