View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18808_high_3 (Length: 491)
Name: NF18808_high_3
Description: NF18808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18808_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 314
Target Start/End: Complemental strand, 37201876 - 37201587
Alignment:
| Q |
18 |
aaaaacagattctactcaccatctggttggacatctgtttgaaaatgtattggaaattgattattctcttgctagtagagatgctatnnnnnnntctgtc |
117 |
Q |
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| T |
37201876 |
aaaaacagattctactcaccatctggttggacatctgtttgaaaatgtattggaaattgattattctcttgctagtagagatgctataaaaaaatctgtc |
37201777 |
T |
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| Q |
118 |
gtttatttaatagagtatattgcttagttctcaataagaagtggaaataatttataatcctaactcaaaataaatcatgatttattaggtgtcatctata |
217 |
Q |
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| T |
37201776 |
gtttatttaatagagtatattgcttagttctcaataagaagtggaa-------ataatcctaactcaaaataaatcatgatttattaggtgtcatctata |
37201684 |
T |
|
| Q |
218 |
tctttttggttcataaccatgatgctatatgcgtatatctacataccctggagagaactaatggcattagacagtaatcttagtgagagaagagcat |
314 |
Q |
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| T |
37201683 |
tctttttggttcataaccatgatgctatatgcatatatctacataccctggagagaactaatggcattacacagttttctttgtgatagaagagcat |
37201587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 251 - 474
Target Start/End: Complemental strand, 37182645 - 37182421
Alignment:
| Q |
251 |
tatatctacataccctggagagaactaatggcattagacagtaatcttagtgagagaagagcatgatattggtttaccaccaagagaataaatccatcaa |
350 |
Q |
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| T |
37182645 |
tatatctagataccctggagagaactaatggcattagacagtaatcttagtgagagaagagcatgatattggtttaccaccaggagaataaatccatcaa |
37182546 |
T |
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| Q |
351 |
caatgtctggccctaaagcttgaatttgagtgcgata-ttttctttagttttcacagataggtttgtcacattttgcaagtccatccattaattgtgctt |
449 |
Q |
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| T |
37182545 |
caatgtctggccctaaagcttgaatttgagtgcgatagttttctttagttttcacagataggtttgtcacattttgcaagtccatccattaattgtgctt |
37182446 |
T |
|
| Q |
450 |
taggaaatattcacaggaaaattaa |
474 |
Q |
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| T |
37182445 |
taggaaatattcacaggaaaattaa |
37182421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 251 - 474
Target Start/End: Complemental strand, 37193777 - 37193553
Alignment:
| Q |
251 |
tatatctacataccctggagagaactaatggcattagacagtaatcttagtgagagaagagcatgatattggtttaccaccaagagaataaatccatcaa |
350 |
Q |
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| T |
37193777 |
tatatctagataccctggagagaactaatggcattagacagtaatcttagtgagagaagagcatgatattggtttaccaccaggagaataaatccatcaa |
37193678 |
T |
|
| Q |
351 |
caatgtctggccctaaagcttgaatttgagtgcgata-ttttctttagttttcacagataggtttgtcacattttgcaagtccatccattaattgtgctt |
449 |
Q |
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| T |
37193677 |
caatgtctggccctaaagcttgaatttgagtgcgatagttttctttagttttcacagataggtttgtcacattttgcaagtccatccattaattgtgctt |
37193578 |
T |
|
| Q |
450 |
taggaaatattcacaggaaaattaa |
474 |
Q |
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||||||||||||||||||||||||| |
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| T |
37193577 |
taggaaatattcacaggaaaattaa |
37193553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 37211268 - 37211224
Alignment:
| Q |
35 |
accatctggttggacatctgtttgaaaatgtattggaaattgatt |
79 |
Q |
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||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
37211268 |
accatatggttggacatctgtttgaaaatgtattggaagttgatt |
37211224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 104
Target Start/End: Complemental strand, 37182846 - 37182783
Alignment:
| Q |
41 |
tggttggacatctgtttgaaaatgtattggaaattgattattctcttgctagtagagatgctat |
104 |
Q |
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| T |
37182846 |
tggttgaacatctgttagaaaatttgtaggaaattgattattctcttcctactatagatgctat |
37182783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 104
Target Start/End: Complemental strand, 37193978 - 37193915
Alignment:
| Q |
41 |
tggttggacatctgtttgaaaatgtattggaaattgattattctcttgctagtagagatgctat |
104 |
Q |
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| T |
37193978 |
tggttgaacatctgttagaaaatttgtaggaaattgattattctcttcctactatagatgctat |
37193915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 118 - 237
Target Start/End: Original strand, 415120 - 415239
Alignment:
| Q |
118 |
gtttatttaatagagtatattgcttagttctcaataagaagtggaaataatttataatcctaactcaaaataaatcatgatttatta-------ggtgtc |
210 |
Q |
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||||||| |||||| |||||||||| |||| ||||||| ||||||||||| | ||||||||||||||||||||||||||| ||||| |
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| T |
415120 |
gtttattgaatagaacatattgcttaattctgaataagatgtggaaataatct-------taactcaaaataaatcatgatttattagttagagggtgtt |
415212 |
T |
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| Q |
211 |
atctatatctttttggttcataaccat |
237 |
Q |
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||||||||||||||||||||||||||| |
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| T |
415213 |
atctatatctttttggttcataaccat |
415239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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