View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18808_high_5 (Length: 434)
Name: NF18808_high_5
Description: NF18808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18808_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 3 - 419
Target Start/End: Complemental strand, 51729359 - 51728941
Alignment:
| Q |
3 |
cacaaactaaagaaaaagagagaaagattaca--caatagtgtcaaaagtaatcaaagaagaattccacatttccatacatagatatgaaacatactttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51729359 |
cacaaactaaagaaaaagagagaaagattacagacaatagtgtcaaaagtaatcaaagaagaattccacatttccatacatagatatgaaacatactttg |
51729260 |
T |
|
| Q |
101 |
gaagcacgnnnnnnntcctgatttacagcataactctcatttctttttcgacaactttgggcctcaagtttcaactttcaccacccagtgagcataccta |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51729259 |
gaagcacgaaaaaaatcctgatttacagcataactctcatttctttttcgacaactttgggcctcaagtttcaactttcaccacccagtgagcataccta |
51729160 |
T |
|
| Q |
201 |
ggttcagctcgcgaagtccagagttaacaaaacctactactccaatcaatcattgtatctctttactcttatatttctcaacttacagaccatgaggtga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51729159 |
ggttcagctcgcgaagtccagagttaacaaaacctactactccaatcaatcattgtatctctttactcttatatttctcaacttacagaccatgaggtga |
51729060 |
T |
|
| Q |
301 |
ggtattcttcgttgggtgatagaagctaaaggtgcagacccctttaaacaatgcgttgattttattgttctctattgtttttacgcactcgctcaatcat |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51729059 |
ggtattcttcgttgggtgatagaagctaaaggtgcagacccctttcaacaatgcgttgatgttattgttctctattgtttttacgcactcgctcaatcat |
51728960 |
T |
|
| Q |
401 |
atttgactatggtggtgat |
419 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
51728959 |
atttgactatggtggtgat |
51728941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University