View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18808_high_6 (Length: 330)
Name: NF18808_high_6
Description: NF18808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18808_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 14 - 311
Target Start/End: Complemental strand, 30918641 - 30918344
Alignment:
| Q |
14 |
atataaaggcaatcagatctaatcactagcacgtaatttggttgaagcaataacacaaacaccttgtgaacattataaaaataattgagaataagtaata |
113 |
Q |
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| T |
30918641 |
atataaaggcaatcagatctaatcactagcacgtaatttggttgaagcaataacacaaacaccttgtgaacattataaaaataattgagaataagtaata |
30918542 |
T |
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| Q |
114 |
gcacgtaatgtagataaattaattaagctaaaagagttaaaaagaaacctgaagaattgagggtttgacgaatgagaaagcaccctaactcgaacgagtc |
213 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30918541 |
gcacgtaatgtagattaattaattaagctaaaagagttaaaaagaaacctgaagaattgagggtttgacgaatgagaaagcaccctaactcgaacgagtc |
30918442 |
T |
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| Q |
214 |
aagaagacgagttagagtgaggtgtatagagaacaagaacaaaaactggaatgatgaaactgaatgaggtgttacgattgtattggtcagtattcgtc |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30918441 |
aagaagacgagttagagtgaggtgtatagagaacaagaacaaaaactggaatggtgaaactgaatgaggtgttacgattgtattggtcagtattcgtc |
30918344 |
T |
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