View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18808_low_1 (Length: 661)

Name: NF18808_low_1
Description: NF18808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18808_low_1
NF18808_low_1
[»] chr1 (9 HSPs)
chr1 (19-429)||(34991143-34991553)
chr1 (19-374)||(34984468-34984823)
chr1 (19-355)||(2303719-2304064)
chr1 (19-198)||(34977264-34977443)
chr1 (509-651)||(34991637-34991779)
chr1 (509-629)||(34984945-34985066)
chr1 (509-629)||(34977689-34977810)
chr1 (563-629)||(2303544-2303610)
chr1 (398-429)||(34984830-34984861)
[»] chr5 (3 HSPs)
chr5 (19-320)||(40581821-40582128)
chr5 (509-622)||(40582273-40582387)
chr5 (398-426)||(40582155-40582183)
[»] chr3 (5 HSPs)
chr3 (19-247)||(22619223-22619457)
chr3 (20-168)||(22646602-22646750)
chr3 (206-247)||(22613628-22613669)
chr3 (40-106)||(22613775-22613841)
chr3 (336-370)||(22646418-22646452)


Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 19 - 429
Target Start/End: Original strand, 34991143 - 34991553
Alignment:
Q  19 cctctcaatcatcaacaaagcttatgaaggtgaaagtttacattttcatgatggaggttgtcaaaatctaaaggaactatacattggagactgtcccaac 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34991143 cctctcaatcatcaacaaagcttatgaaggtgaaagtttacattttcatgatggaggttgtcaaaatctaaaggaactatacattggagactgtcccaac 34991242  T
Q  119 atgaattcaattgttattgataaaggagcattgcattctctaaaaaagtttgagttattcgagatccccaacctcaagacttctggaatccaacacttag 218  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34991243 atgaattcaattgttattgataaaggagcattacattctctaaaaaagtttgagttattcgagatccccaacctcaagacttctggaatccaacacttag 34991342  T
Q  219 agaagcttgaagttctcaatgtttgggatgttccccttgcagaatttaatcttagtgaggaaaatcaatccgaaactttaaggactaaggagatagaaat 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34991343 agaagcttgaagttctcaatgtttgggatgttccccttgcagaatttaatcttagtgaggaaaatcaatccgaaactttaaggactaaggagatagaaat 34991442  T
Q  319 cacaaaccatccaaattggagaacaggtgaacattttcttccatataattgtaaaactctattgtagctagcagtcctctggcaatatttctggttctgt 418  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34991443 cacaaaccatccaaatcggagaacaggtgaacattttcttccatataattgtaaaactctattgtagctagcagtcctctggcaatatttctggttctgt 34991542  T
Q  419 catcaaagtaa 429  Q
    |||||||||||    
T  34991543 catcaaagtaa 34991553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 19 - 374
Target Start/End: Original strand, 34984468 - 34984823
Alignment:
Q  19 cctctcaatcatcaacaaagcttatgaaggtgaaagtttacattttcatgatggaggttgtcaaaatctaaaggaactatacattggagactgtcccaac 118  Q
    |||||||||||||  ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  | ||||    
T  34984468 cctctcaatcatctccaatgcttatgaaggcgaaagtttacattttcatgatggaggttgtcaaaatctaaaggaactgtacattggagacttgcgcaac 34984567  T
Q  119 atgaattcaattgttattgataaaggagcattgcattctctaaaaaagtttgagttattcgagatccccaacctcaagacttctggaatccaacacttag 218  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  || |||||||||    ||||||| |||||||||||||    
T  34984568 atgaattcaattgttatcgataaaggagcattgcattctctaaaaaagtttgagttattcggaatgcccaacctcgttccttctgggatccaacacttag 34984667  T
Q  219 agaagcttgaagttctcaatgtttgggatgttccccttgcagaatttaatcttagtgaggaaaatcaatccgaaactttaaggactaaggagatagaaat 318  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||  |||||||| | |||||||||||| ||| |||||||||||    
T  34984668 agaagcttgaagttctcaatttttgggctgttccccttgcagaatttaatcttagtcagccaaatcaattcaaaactttaaggattaatgagatagaaat 34984767  T
Q  319 cacaaaccatccaaattggagaacaggtgaacattttcttccatataattgtaaaa 374  Q
    ||||  ||| |||  ||  |||| ||||||||||||||||||||||||||||||||    
T  34984768 cacacgccacccattttttagaaaaggtgaacattttcttccatataattgtaaaa 34984823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 19 - 355
Target Start/End: Complemental strand, 2304064 - 2303719
Alignment:
Q  19 cctctcaatcatcaacaaagcttatgaaggtgaaagtttacattttcatgatggaggttgtcaaaatctaaaggaactata--cattggagactgtccca 116  Q
    ||||||||||||| | || |||||||||||  ||||||||||||||||||||||||||| |||||||||||| ||||||||  ||||||| |||   |||    
T  2304064 cctctcaatcatctataatgcttatgaaggcaaaagtttacattttcatgatggaggttttcaaaatctaaaagaactatatacattggacacttgtcca 2303965  T
Q  117 acatgaattcaattgttattgataaaggagcattgcattctctaaaaaagtttgagttattcgagatccccaacctcaaga------cttctggaatcca 210  Q
    || |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||      |||||||||||||    
T  2303964 acttgaattcaattgttatcgataaaggagcattgcattctctaaaaaagttcgagttattcaaaatccccaacctcaagaatgttccttctggaatcca 2303865  T
Q  211 acac-ttagagaagcttgaagttctcaatgtttgggatgttccccttgcagaatttaatcttagtgaggaaaatcaatccgaaactttaaggactaagga 309  Q
    |||| ||||||||||||||| ||||||||||| || | ||||||||||||||||||||||||||| | | ||||| |||| ||||||||||||||| |||    
T  2303864 acactttagagaagcttgaatttctcaatgttcggaaagttccccttgcagaatttaatcttagtcatgcaaatcgatccaaaactttaaggactacgga 2303765  T
Q  310 gatagaaatcacaaaccatccaaattggagaacaggtgaacatttt 355  Q
    |||||||||||||  || ||||| ||  | ||||||||||||||||    
T  2303764 gatagaaatcacatgccgtccaacttacaaaacaggtgaacatttt 2303719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 34977264 - 34977443
Alignment:
Q  19 cctctcaatcatcaacaaagcttatgaaggtgaaagtttacattttcatgatggaggttgtcaaaatctaaaggaactatacattggagactgtcccaac 118  Q
    |||||||||||||  ||| ||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||    
T  34977264 cctctcaatcatctccaatgcttatgtaggcgaaagtttacattttcatgatggaggttgtcaaaatcttaaggaactgtacattggagaatgtcccaac 34977363  T
Q  119 atgaattcaattgttattgataaaggagcattgcattctctaaaaaagtttgagttattcgagatccccaacctcaagac 198  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||    
T  34977364 atgaattcaattgttatcgataaaggagcattgcattctctaaaaaagcttgagttattcgaaatccccaacctcgagac 34977443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 509 - 651
Target Start/End: Original strand, 34991637 - 34991779
Alignment:
Q  509 attctacattaataattataaggtttttattgtgttgtgcctcaagannnnnnnggttggaatccttacatcctgagcagtctaatctccacaatagtaa 608  Q
    |||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||    
T  34991637 attctacattaataattataaggtttttattgtgttgtgcctcaagatttttttggttggaatccttacatcctgagcagtctaatctccacaatagtaa 34991736  T
Q  609 taatttgttgttaatctgtagaattttggcgtcgatgatgatg 651  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  34991737 taatttgttgttaatctgtagaattttggcgtcgatgatgatg 34991779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 509 - 629
Target Start/End: Original strand, 34984945 - 34985066
Alignment:
Q  509 attctacattaataattataaggtttttattgtgttgtgcc-tcaagannnnnnnggttggaatccttacatcctgagcagtctaatctccacaatagta 607  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||       ||||||||||||||||| |||||||||||||||||||||||||||    
T  34984945 attctacatcaataattataaggtttttattgtgttgtgccctcaagaggtttttggttggaatccttacattctgagcagtctaatctccacaatagta 34985044  T
Q  608 ataatttgttgttaatctgtag 629  Q
    ||||||||||||||||||||||    
T  34985045 ataatttgttgttaatctgtag 34985066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 509 - 629
Target Start/End: Original strand, 34977689 - 34977810
Alignment:
Q  509 attctacattaataattataaggtttttattgtgttgtgcc-tcaagannnnnnnggttggaatccttacatcctgagcagtctaatctccacaatagta 607  Q
    ||||||||| |||||||||||| |  ||||||||||||||| ||||||       ||||||||||||| ||| ||||||||||||||||||||| ||||     
T  34977689 attctacatcaataattataagatacttattgtgttgtgccctcaagaggtttttggttggaatcctttcattctgagcagtctaatctccacagtagtg 34977788  T
Q  608 ataatttgttgttaatctgtag 629  Q
    |||||||||||||||| |||||    
T  34977789 ataatttgttgttaatatgtag 34977810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 563 - 629
Target Start/End: Complemental strand, 2303610 - 2303544
Alignment:
Q  563 ggttggaatccttacatcctgagcagtctaatctccacaatagtaataatttgttgttaatctgtag 629  Q
    |||||||||| || ||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2303610 ggttggaatcatttcattctgagcagtctaatctccaccatagtaataatttgttgttaatctgtag 2303544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 398 - 429
Target Start/End: Original strand, 34984830 - 34984861
Alignment:
Q  398 tggcaatatttctggttctgtcatcaaagtaa 429  Q
    ||||||||||||||||||||||||||||||||    
T  34984830 tggcaatatttctggttctgtcatcaaagtaa 34984861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 161; Significance: 2e-85; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 19 - 320
Target Start/End: Original strand, 40581821 - 40582128
Alignment:
Q  19 cctctcaatcatcaacaaagcttatgaaggtgaaagtttacattttcatgatggaggttgtcaaaatctaaaggaactatacattggagactgtcccaac 118  Q
    ||||||||||||| |||| ||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||| ||  | ||||    
T  40581821 cctctcaatcatctacaatgcttatgaaggcgaaagcttacattttcatgacggaggttgtcaaaatctaaaggaactgtacattggaggcttgctcaac 40581920  T
Q  119 atgaattcaattgttattgataaaggagcattgcattctctaaaaaagtttgagttattcgagatccccaacctcaaga------cttctggaatccaac 212  Q
     |||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||| | ||||||||||||||||      ||||||| |||||||    
T  40581921 gtgaattcaattgttatcgataaaggagcattgcattctctaaaattgtttgagttattccatatccccaacctcaagacggttccttctgggatccaac 40582020  T
Q  213 acttagagaagcttgaagttctcaatgtttgggatgttccccttgcagaatttaatcttagtgaggaaaatcaatccgaaactttaaggactaaggagat 312  Q
    || |||||||||||||||||||  |||||  | |||  | ||||||| ||||||||||||||| || |||||||||| ||||||||| ||||||||||||    
T  40582021 acctagagaagcttgaagttctacatgttccgtatgaactccttgcataatttaatcttagtgtggcaaatcaatccaaaactttaatgactaaggagat 40582120  T
Q  313 agaaatca 320  Q
    ||||||||    
T  40582121 agaaatca 40582128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 509 - 622
Target Start/End: Original strand, 40582273 - 40582387
Alignment:
Q  509 attctacattaataattataaggtttttattgtgttgtgcc-tcaagannnnnnnggttggaatccttacatcctgagcagtctaatctccacaatagta 607  Q
    ||||||| | |||||||||||||||| ||||||||||| || ||||||       |||||||||| || ||| || ||||||||||||||||||||||||    
T  40582273 attctacgtcaataattataaggtttctattgtgttgtaccctcaagaggtttttggttggaatcatttcattctaagcagtctaatctccacaatagta 40582372  T
Q  608 ataatttgttgttaa 622  Q
    |||||||||||||||    
T  40582373 ataatttgttgttaa 40582387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 398 - 426
Target Start/End: Original strand, 40582155 - 40582183
Alignment:
Q  398 tggcaatatttctggttctgtcatcaaag 426  Q
    |||||||||||||||||||||||||||||    
T  40582155 tggcaatatttctggttctgtcatcaaag 40582183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 6e-42; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 22619457 - 22619223
Alignment:
Q  19 cctctcaatcatcaacaaagcttatgaaggtgaaagtttacattttcatgatggaggttgtcaaaatctaaaggaactatacattggagactgtcccaac 118  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |  |||||||||||||||||||| ||| |||| |  || |||    
T  22619457 cctctcaatcatcaacaatgcttatgaaggtgaaagtttacattttcacgatggagggttgcaaaatctaaaggaactatatattagagaatcgcctaac 22619358  T
Q  119 atgaattcaattgttattgataaaggagcattgcattctctaaaaaagtttgagttattcgag-atccccaacctcaagac--ttc----tggaatccaa 211  Q
     || |||||||| | || || ||||||||  | ||||||||||||||||| |||||| || || |||||||||||||||||  |||    ||| |||| |    
T  22619357 ttgcattcaattttcatcgacaaaggagcgctacattctctaaaaaagttcgagtta-tctagcatccccaacctcaagacggttccagatggcatccga 22619259  T
Q  212 cacttagagaagcttgaagttctcaatgtttgggat 247  Q
    |||||||| ||||||||||||||| |||||||||||    
T  22619258 cacttagaaaagcttgaagttctcgatgtttgggat 22619223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 20 - 168
Target Start/End: Complemental strand, 22646750 - 22646602
Alignment:
Q  20 ctctcaatcatcaacaaagcttatgaaggtgaaagtttacattttcatgatggaggttgtcaaaatctaaaggaactatacattggagactgtcccaaca 119  Q
    ||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||  |||||  ||  ||     
T  22646750 ctctcaatcattaacaaagcttataaaggtgaaattttacattttcatgatggagggtttcaaaatctaaaggaactatacattacagacttgcctgact 22646651  T
Q  120 tgaattcaattgttattgataaaggagcattgcattctctaaaaaagtt 168  Q
    ||||||| || || |||||| |||||||||| | |||||||||||||||    
T  22646650 tgaattcgatcgtcattgatgaaggagcattaccttctctaaaaaagtt 22646602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 247
Target Start/End: Complemental strand, 22613669 - 22613628
Alignment:
Q  206 atccaacacttagagaagcttgaagttctcaatgtttgggat 247  Q
    ||||||||||||||||||||| ||||||||||| ||||||||    
T  22613669 atccaacacttagagaagcttaaagttctcaatatttgggat 22613628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 22613841 - 22613775
Alignment:
Q  40 ttatgaaggtgaaagtttacattttcatgatggaggttgtcaaaatctaaaggaactatacattgga 106  Q
    ||||||||||||||||||  |||||||  ||||||| | ||| || |||||||||||| ||||||||    
T  22613841 ttatgaaggtgaaagtttgtattttcaaaatggagggtttcacaaactaaaggaactaaacattgga 22613775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 336 - 370
Target Start/End: Complemental strand, 22646452 - 22646418
Alignment:
Q  336 ggagaacaggtgaacattttcttccatataattgt 370  Q
    |||||||||||||| ||||||||||||||||||||    
T  22646452 ggagaacaggtgaatattttcttccatataattgt 22646418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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