View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18808_low_10 (Length: 317)
Name: NF18808_low_10
Description: NF18808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18808_low_10 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 317
Target Start/End: Complemental strand, 3626218 - 3625919
Alignment:
| Q |
18 |
gtttccaggtgggaaaggtacagcggcgatctgcacgttttccggcagcggtggagcacatgagagttctggtggtggtagaggaagaagggctatgttg |
117 |
Q |
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| T |
3626218 |
gtttccaggtgggaaaggtacagcagcgatctgcacgttttccggcagcggtggagcacatgagagttctggtggtggtagaggaagaagggctatgttg |
3626119 |
T |
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| Q |
118 |
gtttgtcgggtcatagcgggtagggtttccaagcgggtagggtttgtggattcgttgttggatggacgagttgggtttgactcggtgagtggtgataatg |
217 |
Q |
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| T |
3626118 |
gtttgtcgggtcatagcgggtagggtttccaagcgggtagggtttgtggattcgttgttggatggacgagttgggtttgactcggtgagtggtgataatg |
3626019 |
T |
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| Q |
218 |
gtgagttgttggtctttgactcgcgtgctgttttgccttgttttcttattatttataggttgtaaaaattatttggagnnnnnnnacttttaataatctt |
317 |
Q |
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| T |
3626018 |
gtgagttgttggtctttgactcgcgtgctgttttgccttgttttcttatcatttataggttgtaaaaattatttggagtttttttacttttaataatctt |
3625919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 40 - 286
Target Start/End: Original strand, 41957986 - 41958223
Alignment:
| Q |
40 |
gcggcgatctgcacgttttccggcagcggtggagcacatgagagttctggtggtggtagaggaagaagggctatgttggtttgtcgggtcatagcgggta |
139 |
Q |
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| T |
41957986 |
gcggcgatatgtacattttccgggagcggtggtgcgcatgagaatagcgggggtgggaaaggaagaatggcgatgttggtgtgtagggttgttgcgggtc |
41958085 |
T |
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| Q |
140 |
gggtttccaagcgggtagggtttgtggattcgttgttggatggacgagttgggtttgactcggtgagtggtgataatggtgagttgttggtctttgactc |
239 |
Q |
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| T |
41958086 |
gggtttctaagcgggttgggtatttggatt---------ataaacgagttgggtttgactcagtgagtggtgataatggtgagttattggtgtttgactc |
41958176 |
T |
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| Q |
240 |
gcgtgctgttttgccttgttttcttattatttataggttgtaaaaat |
286 |
Q |
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| T |
41958177 |
gcgtgcggtattgccttgttttcttattatttacaggttgtaaaaat |
41958223 |
T |
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