View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18808_low_11 (Length: 307)
Name: NF18808_low_11
Description: NF18808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18808_low_11 |
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| [»] chr1 (5 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 17 - 307
Target Start/End: Complemental strand, 30716162 - 30715851
Alignment:
| Q |
17 |
taaatgtgtgaaaactttataaatataatacatgttcaacggggggtcgagaatatatagatatagtgaggatccgttgataccaggtgtaagt------ |
110 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||| |||||| || | |||||||| |
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| T |
30716162 |
taaatgtgtgaaaactttataaatataatacatgttcaacggggg-tcgagaatatatatatagagtgaggattcgttgacactaagtgtaagtttttga |
30716064 |
T |
|
| Q |
111 |
--------------catccgtttaattagatgaatcttgtggttaaaaatatttcataagtaagcaacatatgatctaatttttatgaattccacatgag |
196 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
30716063 |
cttacaccaaatctcatccgtttaattagatgaatcttgtggttaaaaataattcataagtaagtaacatatgatctaatttttatgaattccacatgag |
30715964 |
T |
|
| Q |
197 |
tgctatcattctttcttgaatgtgctgtcgctaacacgcaaacaaca--acacacatggttcctcccctttctcatatgaaatcgtaactacatagagtt |
294 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||| || |
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| T |
30715963 |
tgttatcattctttcttgaatgtgctgtcgctaacacgcaaacaacaccacacacacggttcctcccctttctcatatgaaatcgtaattacatagaatt |
30715864 |
T |
|
| Q |
295 |
ttccaaattaaca |
307 |
Q |
| |
|
|| |||||||||| |
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|
| T |
30715863 |
tttcaaattaaca |
30715851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 142 - 249
Target Start/End: Original strand, 23616823 - 23616930
Alignment:
| Q |
142 |
aaaatatttcataagtaagcaacatatgatctaatttttatgaattccacatgagtgctatcattctttcttgaatgtgctgtcgctaacacgcaaacaa |
241 |
Q |
| |
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|||| |||||| || ||| ||||| ||||||| |||| |||||||||||| ||||| || ||||||||| |||| |||||| ||||| ||||||| ||| |
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| T |
23616823 |
aaaacatttcacaaataaacaacacctgatctatttttaatgaattccacacgagtgttaccattctttcctgaaagtgctgccgctatcacgcaatcaa |
23616922 |
T |
|
| Q |
242 |
caacacac |
249 |
Q |
| |
|
|||||||| |
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|
| T |
23616923 |
caacacac |
23616930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 142 - 249
Target Start/End: Original strand, 23648164 - 23648271
Alignment:
| Q |
142 |
aaaatatttcataagtaagcaacatatgatctaatttttatgaattccacatgagtgctatcattctttcttgaatgtgctgtcgctaacacgcaaacaa |
241 |
Q |
| |
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|||| |||||| || ||| ||||| ||||||| |||| |||||||||||| ||||| || ||||||||| |||| |||||| ||||| ||||||| ||| |
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| T |
23648164 |
aaaacatttcacaaataaacaacacctgatctatttttaatgaattccacaggagtgttaccattctttcctgaaagtgctgccgctatcacgcaatcaa |
23648263 |
T |
|
| Q |
242 |
caacacac |
249 |
Q |
| |
|
|||||||| |
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|
| T |
23648264 |
caacacac |
23648271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 249
Target Start/End: Original strand, 23622531 - 23622638
Alignment:
| Q |
142 |
aaaatatttcataagtaagcaacatatgatctaatttttatgaattccacatgagtgctatcattctttcttgaatgtgctgtcgctaacacgcaaacaa |
241 |
Q |
| |
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|||| |||||| || ||| ||||| ||||||| |||| || ||||||||| ||||| || | ||||||| |||| |||||| ||||| ||||||| ||| |
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| T |
23622531 |
aaaacatttcacaaataaacaacacctgatctatttttaataaattccacacgagtgttaccgttctttcctgaaagtgctgccgctatcacgcaatcaa |
23622630 |
T |
|
| Q |
242 |
caacacac |
249 |
Q |
| |
|
|||||||| |
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|
| T |
23622631 |
caacacac |
23622638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 249
Target Start/End: Original strand, 23733480 - 23733587
Alignment:
| Q |
142 |
aaaatatttcataagtaagcaacatatgatctaatttttatgaattccacatgagtgctatcattctttcttgaatgtgctgtcgctaacacgcaaacaa |
241 |
Q |
| |
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|||| |||||| || ||| ||||| || |||| |||| |||||||||||| ||||| || ||||||||| |||| |||||| || || ||||||| ||| |
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| T |
23733480 |
aaaacatttcacaaataaacaacacctggtctatttttaatgaattccacacgagtgttaccattctttcctgaaagtgctgccgatatcacgcaatcaa |
23733579 |
T |
|
| Q |
242 |
caacacac |
249 |
Q |
| |
|
|||||||| |
|
|
| T |
23733580 |
caacacac |
23733587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 17 - 307
Target Start/End: Complemental strand, 51708313 - 51707998
Alignment:
| Q |
17 |
taaatgtgtgaaaactttataaatataatacatgttcaacggggggtcgagaatatatagatata----gtgaggatccgttgataccaggtgtaagtca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||| ||||||||||||||| |||| |||||||||| |
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| T |
51708313 |
taaatgtgtgaaaactttataaatataatacaagttcaacgggg--tcgagaatatatatatatatatagtgaggatccgttgacaccatgtgtaagtca |
51708216 |
T |
|
| Q |
113 |
---------------------tccgtttaattagatgaatcttgtggttaaaaatatttcataagtaagcaacatatgatctaatttttatgaattccac |
191 |
Q |
| |
|
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51708215 |
aaagacttacatcaaatctcatccatttaattagatgaatcttatggttaaaaatatttcataagtaagcaacatatgatctaatttttatgaattccac |
51708116 |
T |
|
| Q |
192 |
atgagtgctatcattctttcttgaatgtgctgtcgctaacacgcaaacaacaa--cacacatggttcctcccctttctcatatgaaatcgtaactacata |
289 |
Q |
| |
|
||||||| |||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
51708115 |
atgagtgatatcattctttcctgaatgtgttgtcgctaacacgcaaacaacaacccacacatggttcttcccctttctcatatgaaatcgtaactacata |
51708016 |
T |
|
| Q |
290 |
gagttttccaaattaaca |
307 |
Q |
| |
|
|| ||||||||||||||| |
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| T |
51708015 |
gaattttccaaattaaca |
51707998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 81 - 307
Target Start/End: Complemental strand, 30058849 - 30058623
Alignment:
| Q |
81 |
agtgaggatccgttgataccaggtgtaagtc--atccgtttaattagatgaatcttgtggttaaaaatatttcataagtaagcaacatatgatctaattt |
178 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
30058849 |
agtgaggatccgttgatataaggtgtaagtctcatccgtttaattagatgaatcttgtggttagaaatatttcataagtaagcaacatatgatctaattt |
30058750 |
T |
|
| Q |
179 |
ttatgaattccacatgagtgctatcattctttcttgaatgtgctgtcgctaacacgcaaacaacaaca--cacatggttcctcccctttctcatatgaaa |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||| |||||||| |||||||||||| |
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|
| T |
30058749 |
ttatgaattccacatgagtgctatcattctttcttgaatgtgatgtcgcgaacacgcaaacaacaacacacacaaggttcctc----gtctcatatgaaa |
30058654 |
T |
|
| Q |
277 |
tcgtaactacatagagttttccaaattaaca |
307 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |
|
|
| T |
30058653 |
tcgtaactacatagaattttccaaattaaca |
30058623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 117 - 275
Target Start/End: Complemental strand, 9269935 - 9269773
Alignment:
| Q |
117 |
tttaattagatgaatcttgtggttaaaaatatttcataagtaagcaacatatgatctaatttttatgaattccacatgagtgctatcattctttcttgaa |
216 |
Q |
| |
|
|||||||||||| ||||| |||||||||| |||||| || |||||||||| ||||| ||||||||||||||||||||| || || |||||||| |||| |
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|
| T |
9269935 |
tttaattagatggatcttatggttaaaaacatttcacaaataagcaacattggatct-atttttatgaattccacatgattgttaccattcttttatgaa |
9269837 |
T |
|
| Q |
217 |
tgtg-ctgtcgctaacacgcaaacaacaacacac---atggttcctccc-ctttctcatatgaa |
275 |
Q |
| |
|
||| || ||||||||||||||||||||||||| |||||||||||| |||||| ||||||| |
|
|
| T |
9269836 |
agtgtttgccgctaacacgcaaacaacaacacacactatggttcctccctctttcttatatgaa |
9269773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 117 - 249
Target Start/End: Original strand, 10854089 - 10854221
Alignment:
| Q |
117 |
tttaattagatgaatcttgtggttaaaaatatttcataagtaagcaacatatgatctaatttttatgaattccacatgagtgctatcattctttcttgaa |
216 |
Q |
| |
|
|||||||||||| ||||| |||||||||| |||||| || |||||||||| ||||| ||||||||||||||||||||| || || ||||||||| |||| |
|
|
| T |
10854089 |
tttaattagatggatcttatggttaaaaacatttcacaaataagcaacatcggatct-atttttatgaattccacatgattgttaccattctttcctgaa |
10854187 |
T |
|
| Q |
217 |
tgtg-ctgtcgctaacacgcaaacaacaacacac |
249 |
Q |
| |
|
||| || ||||| |||||||||||||||||| |
|
|
| T |
10854188 |
agtgtttgctgctaaaacgcaaacaacaacacac |
10854221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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