View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18808_low_13 (Length: 285)
Name: NF18808_low_13
Description: NF18808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18808_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 28 - 267
Target Start/End: Complemental strand, 26002515 - 26002278
Alignment:
| Q |
28 |
gcctgtgccaattacacacnnnnnnncatgttagatcatatctcattcattggtccttaaactcaatttagacctttccaatttttatattttttggtgt |
127 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| | |
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| T |
26002515 |
gcctgtgccaattacacacaaaaaaacatgttagatcatatctcattcattggtccttaaactcaatttagacctttccaattttttt--tttttggcgg |
26002418 |
T |
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| Q |
128 |
tgttccaaatttatttgtttaatcaatcaatatagaaccctaagtgatgaacaataccgtgcaacccaagtaataatcacccattgaaatttgtaaagaa |
227 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
26002417 |
tgttccaaatttatttgtttaatcaatcaatataggaccctaagtgatgaacaataccgtgcaacccaagtaataatcacacattgaaatttgtaaagaa |
26002318 |
T |
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| Q |
228 |
tcaccatgatgaagtttttatcttcaaataatgattattt |
267 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
26002317 |
tcaccatgatgaagtttttatcttcaaataatgattattt |
26002278 |
T |
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