View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18808_low_14 (Length: 279)
Name: NF18808_low_14
Description: NF18808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18808_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 42960168 - 42959918
Alignment:
| Q |
18 |
aacaacttcttaacaacactgtgaaggctaatatcaaccttataccaaagcatgtcaatgatacagaatcactagaacagttttgtagagacactgtgat |
117 |
Q |
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| T |
42960168 |
aacaacttcttaacaacactgtgaaggctaatatcaaccttataccaaagcatgtcaatgatacagaatcactagaacagttttgtagagacactgtgat |
42960069 |
T |
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| Q |
118 |
cactatttggcactatcatggtggatgccatgtagggaaggttatcgattcggatcataaggttcttggtgttaacagacttcgtgtcatagatggatca |
217 |
Q |
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| T |
42960068 |
cactatttggcactatcatggtggatgccatgtagggaaggttatcgattcggatcataaggttcttggtgttaacagacttcgtgtcatagatggatca |
42959969 |
T |
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| Q |
218 |
acatttaccgaatcgccgggaacaaatcctcaagctactgtcatgatgatg |
268 |
Q |
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| T |
42959968 |
acatttaccgaatcgccgggaacaaatcctcaagctactgtcatgatgatg |
42959918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 268
Target Start/End: Original strand, 5504586 - 5504817
Alignment:
| Q |
37 |
tgtgaaggctaatatcaaccttataccaaagcatgtcaatgatacagaatcactagaacagttttgtagagacactgtgatcactatttggcactatcat |
136 |
Q |
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| T |
5504586 |
tgtgaagactactgtcaacttcataccaaaacatgccaatgacacatcttccctagagcagttctgcaaagacactgtcatcacaatttggcattaccat |
5504685 |
T |
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| Q |
137 |
ggtggatgccatgtagggaaggttatcgattcggatcataaggttcttggtgttaacagacttcgtgtcatagatggatcaacatttaccgaatcgccgg |
236 |
Q |
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| T |
5504686 |
ggtggatgtcatgtgggaaaggtagttagccctgattataaggttcttgacgttgacagactccgagtcgtcgatggttcaacgtttactgaatcaccag |
5504785 |
T |
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| Q |
237 |
gaacaaatcctcaagctactgtcatgatgatg |
268 |
Q |
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| T |
5504786 |
gaacaaatcctcaagccactgtgatgatgatg |
5504817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 141
Target Start/End: Original strand, 3094265 - 3094314
Alignment:
| Q |
92 |
gaacagttttgtagagacactgtgatcactatttggcactatcatggtgg |
141 |
Q |
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| T |
3094265 |
gaacaattttgtagagacactgtgatgactatatggcattatcatggtgg |
3094314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 141
Target Start/End: Original strand, 3085419 - 3085468
Alignment:
| Q |
92 |
gaacagttttgtagagacactgtgatcactatttggcactatcatggtgg |
141 |
Q |
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| T |
3085419 |
gaacaattttgtagagacactgtgatgacaatatggcattatcatggtgg |
3085468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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