View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18808_low_18 (Length: 213)

Name: NF18808_low_18
Description: NF18808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18808_low_18
NF18808_low_18
[»] chr7 (8 HSPs)
chr7 (83-205)||(17756767-17756889)
chr7 (83-198)||(1075830-1075945)
chr7 (83-198)||(36724090-36724205)
chr7 (119-170)||(19849380-19849431)
chr7 (87-205)||(14784673-14784791)
chr7 (127-176)||(44945154-44945203)
chr7 (1-42)||(19849385-19849426)
chr7 (128-204)||(15234705-15234781)
[»] chr4 (3 HSPs)
chr4 (83-205)||(45071200-45071323)
chr4 (145-196)||(9457000-9457051)
chr4 (5-42)||(45071246-45071283)
[»] chr1 (2 HSPs)
chr1 (83-204)||(4198397-4198519)
chr1 (83-205)||(36565618-36565742)
[»] chr6 (3 HSPs)
chr6 (90-205)||(34884346-34884462)
chr6 (107-198)||(3419132-3419223)
chr6 (119-205)||(26229378-26229464)
[»] scaffold0001 (1 HSPs)
scaffold0001 (83-198)||(181684-181799)
[»] chr3 (3 HSPs)
chr3 (83-198)||(25644774-25644889)
chr3 (83-198)||(47100018-47100133)
chr3 (87-204)||(43410316-43410433)
[»] chr2 (1 HSPs)
chr2 (83-198)||(13764775-13764890)
[»] chr5 (2 HSPs)
chr5 (125-205)||(4428718-4428798)
chr5 (128-204)||(17549352-17549428)
[»] chr8 (1 HSPs)
chr8 (98-205)||(7011388-7011495)


Alignment Details
Target: chr7 (Bit Score: 87; Significance: 7e-42; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 83 - 205
Target Start/End: Original strand, 17756767 - 17756889
Alignment:
Q  83 attcaaaaaacaaggtcctggtgggtatcaaactaacatccccaggtatcaatcaagcaatattaccaccacgccagttaacaatgttgcacatgttttg 182  Q
    |||||||| |||||| ||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||| ||||||||||||| ||||||| |||||    
T  17756767 attcaaaatacaaggacctggtgggtatcaaactagcatccccgggtatcaatctagcaatattaccaccacaccagttaacaatgatgcacattttttg 17756866  T
Q  183 aaactgtttaatatattttcttc 205  Q
    |||||||||||||||| ||||||    
T  17756867 aaactgtttaatatatattcttc 17756889  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 83 - 198
Target Start/End: Complemental strand, 1075945 - 1075830
Alignment:
Q  83 attcaaaaaacaaggtcctggtgggtatcaaactaacatccccaggtatcaatcaagcaatattaccaccacgccagttaacaatgttgcacatgttttg 182  Q
    |||||||||||||||| || ||||||||| ||||| |||||||| |  | ||||| |||| ||||||||||| ||||||||||||||||||||| |||||    
T  1075945 attcaaaaaacaaggttctagtgggtatcgaactagcatccccatgatttaatcatgcaaaattaccaccacaccagttaacaatgttgcacatcttttg 1075846  T
Q  183 aaactgtttaatatat 198  Q
    || |||||||||||||    
T  1075845 aatctgtttaatatat 1075830  T

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Target: chr7; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 83 - 198
Target Start/End: Original strand, 36724090 - 36724205
Alignment:
Q  83 attcaaaaaacaaggtcctggtgggtatcaaactaacatccccaggtatcaatcaagcaatattaccaccacgccagttaacaatgttgcacatgttttg 182  Q
    |||||||||| |||||||||||||||||| ||||| |||||||| |  | ||||| |||| |||| |||||| ||||||||||||||||||||| |||||    
T  36724090 attcaaaaaataaggtcctggtgggtatcgaactagcatccccatgatttaatcatgcaaaattatcaccacaccagttaacaatgttgcacatcttttg 36724189  T
Q  183 aaactgtttaatatat 198  Q
    || |||||||||||||    
T  36724190 aatctgtttaatatat 36724205  T

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Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 119 - 170
Target Start/End: Complemental strand, 19849431 - 19849380
Alignment:
Q  119 catccccaggtatcaatcaagcaatattaccaccacgccagttaacaatgtt 170  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  19849431 catccccaggtatcaatcaagcaatattaccaccacaccagttaacaatgtt 19849380  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 87 - 205
Target Start/End: Complemental strand, 14784791 - 14784673
Alignment:
Q  87 aaaaaacaaggtcctggtgggtatcaaactaacatccccaggtatcaatcaagcaatattaccaccacgccagttaacaatgttgcacatgttttgaaac 186  Q
    |||||| ||||||||| | ||  |||||| | |||||||  |||||||   ||| |||||||||||||  || ||||||| ||||||||| || ||||||    
T  14784791 aaaaaaaaaggtcctgctaggattcaaacaagcatccccgagtatcaaattagcgatattaccaccacaacaattaacaacgttgcacattttgtgaaac 14784692  T
Q  187 tgtttaatatattttcttc 205  Q
    |||||||||||| ||||||    
T  14784691 tgtttaatatatattcttc 14784673  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 176
Target Start/End: Original strand, 44945154 - 44945203
Alignment:
Q  127 ggtatcaatcaagcaatattaccaccacgccagttaacaatgttgcacat 176  Q
    |||||||||||||||||||||||||||| | |||||||||||| ||||||    
T  44945154 ggtatcaatcaagcaatattaccaccacacgagttaacaatgtagcacat 44945203  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 19849426 - 19849385
Alignment:
Q  1 ccaggtatcaatcaagcaatattcccaccacgccagttaaca 42  Q
    ||||||||||||||||||||||| ||||||| ||||||||||    
T  19849426 ccaggtatcaatcaagcaatattaccaccacaccagttaaca 19849385  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 204
Target Start/End: Complemental strand, 15234781 - 15234705
Alignment:
Q  128 gtatcaatcaagcaatattaccaccacgccagttaacaatgttgcacatgttttgaaactgtttaatatattttctt 204  Q
    |||||||  |||| |||||||||||||  || ||||||| ||||||| | || |||||||||||||||||| |||||    
T  15234781 gtatcaaataagcgatattaccaccacaacaattaacaacgttgcacgttttgtgaaactgtttaatatatattctt 15234705  T

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Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 83 - 205
Target Start/End: Original strand, 45071200 - 45071323
Alignment:
Q  83 attcaaaaaacaaggtcctggtgggtatcaaactaacatcccc-aggtatcaatcaagcaatattaccaccacgccagttaacaatgttgcacatgtttt 181  Q
    |||||||||||||| |||| || |||||||||||| ||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  45071200 attcaaaaaacaagatcctagtaggtatcaaactagcatcccccaagtatcaatcaagcaatattaccaccacaccagttaacaatgttgcacatttttt 45071299  T
Q  182 gaaactgtttaatatattttcttc 205  Q
    |||||| |||||||||| ||||||    
T  45071300 gaaactatttaatatatattcttc 45071323  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 196
Target Start/End: Complemental strand, 9457051 - 9457000
Alignment:
Q  145 ttaccaccacgccagttaacaatgttgcacatgttttgaaactgtttaatat 196  Q
    ||||||||||  |||||||||||||||||||| |||||||||| ||||||||    
T  9457051 ttaccaccacaacagttaacaatgttgcacatattttgaaactatttaatat 9457000  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 45071246 - 45071283
Alignment:
Q  5 gtatcaatcaagcaatattcccaccacgccagttaaca 42  Q
    ||||||||||||||||||| ||||||| ||||||||||    
T  45071246 gtatcaatcaagcaatattaccaccacaccagttaaca 45071283  T

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Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 83 - 204
Target Start/End: Original strand, 4198397 - 4198519
Alignment:
Q  83 attcaaaaaacaaggtcctggtgggtatcaaactaacatcccc-aggtatcaatcaagcaatattaccaccacgccagttaacaatgttgcacatgtttt 181  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||| || ||||||| |||||||||||| ||| |||| ||||    
T  4198397 attcaaaaaacaaggtcctggtgggtatcaaactagcatcccccaggtatcaaacaagcaattttgccaccacaccagttaacaatattgtacatttttt 4198496  T
Q  182 gaaactgtttaatatattttctt 204  Q
     |||||||||||||||| |||||    
T  4198497 aaaactgtttaatatatattctt 4198519  T

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Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 83 - 205
Target Start/End: Complemental strand, 36565742 - 36565618
Alignment:
Q  83 attcaaaaaacaaggtcctggtgggtatca-aactaacatcccc-aggtatcaatcaagcaatattaccaccacgccagttaacaatgttgcacatgttt 180  Q
    |||||||||||||||||||||||||||||  ||||| ||||||| ||||||||| |||||||| || ||||||| |||||||||||| ||| |||| |||    
T  36565742 attcaaaaaacaaggtcctggtgggtatcggaactagcatcccccaggtatcaaacaagcaattttgccaccacaccagttaacaatattgaacattttt 36565643  T
Q  181 tgaaactgtttaatatattttcttc 205  Q
    |||||||||||||||||| ||||||    
T  36565642 tgaaactgtttaatatatattcttc 36565618  T

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Target: chr6 (Bit Score: 65; Significance: 9e-29; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 90 - 205
Target Start/End: Complemental strand, 34884462 - 34884346
Alignment:
Q  90 aaacaaggtcctggtgggtatcaaactaacatcccc-aggtatcaatcaagcaatattaccaccacgccagttaacaatgttgcacatgttttgaaactg 188  Q
    |||||| ||||||||||||||| ||||| ||||||| | ||||||| |||||||| |||||||||| |||||||||||| ||| |||| |||||||||||    
T  34884462 aaacaatgtcctggtgggtatcgaactagcatcccccaagtatcaaacaagcaattttaccaccacaccagttaacaatattgaacattttttgaaactg 34884363  T
Q  189 tttaatatattttcttc 205  Q
    |||||||||| ||||||    
T  34884362 tttaatatatattcttc 34884346  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 107 - 198
Target Start/End: Original strand, 3419132 - 3419223
Alignment:
Q  107 gtatcaaactaacatccccaggtatcaatcaagcaatattaccaccacgccagttaacaatgttgcacatgttttgaaactgtttaatatat 198  Q
    ||||| ||||| |||||||| |  | ||||| ||||  |||||||||| ||||||||||||||||||||| ||||||| |||||||||||||    
T  3419132 gtatcgaactagcatccccatgatttaatcatgcaaatttaccaccacaccagttaacaatgttgcacatcttttgaatctgtttaatatat 3419223  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 205
Target Start/End: Original strand, 26229378 - 26229464
Alignment:
Q  119 catccccaggtatcaatcaagcaatattaccaccacgccagttaacaatgttgcacatgttttgaaactgtttaatatattttcttc 205  Q
    |||||||| |||||| | | ||||||||||||| || |||| ||||||||||| |||| |||| ||||| |||||||||| ||||||    
T  26229378 catccccatgtatcagtaaggcaatattaccactacaccagataacaatgttgtacatatttttaaactatttaatatatattcttc 26229464  T

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Target: scaffold0001 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 83 - 198
Target Start/End: Original strand, 181684 - 181799
Alignment:
Q  83 attcaaaaaacaaggtcctggtgggtatcaaactaacatccccaggtatcaatcaagcaatattaccaccacgccagttaacaatgttgcacatgttttg 182  Q
    ||||||||||||||||||||||||||| | ||||| |||||||||| || ||||| |||| ||||||||||| ||| ||||||||||||||||| ||||     
T  181684 attcaaaaaacaaggtcctggtgggtaccgaactagcatccccaggcattaatcatgcaaaattaccaccacaccaattaacaatgttgcacatattttt 181783  T
Q  183 aaactgtttaatatat 198  Q
    || |||| ||||||||    
T  181784 aatctgtataatatat 181799  T

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Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 83 - 198
Target Start/End: Original strand, 25644774 - 25644889
Alignment:
Q  83 attcaaaaaacaaggtcctggtgggtatcaaactaacatccccaggtatcaatcaagcaatattaccaccacgccagttaacaatgttgcacatgttttg 182  Q
    ||||||| ||||||||||||||||||||| ||||| |||||||| | || ||||| |||| ||||||||||| ||| ||||||||||||||||| |||||    
T  25644774 attcaaataacaaggtcctggtgggtatcgaactagcatccccatgcattaatcatgcaaaattaccaccacaccacttaacaatgttgcacatattttg 25644873  T
Q  183 aaactgtttaatatat 198  Q
    ||  ||||||||||||    
T  25644874 aatttgtttaatatat 25644889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 83 - 198
Target Start/End: Original strand, 47100018 - 47100133
Alignment:
Q  83 attcaaaaaacaaggtcctggtgggtatcaaactaacatccccaggtatcaatcaagcaatattaccaccacgccagttaacaatgttgcacatgttttg 182  Q
    |||||||||||||||||||||||| |||| ||||| |||||||| |  | ||||| | || ||||||||||| ||||||||||||||||||||| |||||    
T  47100018 attcaaaaaacaaggtcctggtggatatcgaactagcatccccatgatttaatcatgtaaaattaccaccacaccagttaacaatgttgcacatcttttg 47100117  T
Q  183 aaactgtttaatatat 198  Q
    || |||||||||||||    
T  47100118 aatctgtttaatatat 47100133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 87 - 204
Target Start/End: Original strand, 43410316 - 43410433
Alignment:
Q  87 aaaaaacaaggtcctggtgggtatcaaactaacatccccaggtatcaatcaagcaatattaccaccacgccagttaacaatgttgcacatgttttgaaac 186  Q
    |||||| |||||||| |||||  |||||| |||||||||| |||| |||||||||||||||||||| |  ||||| |||||||| ||||| |||| |||     
T  43410316 aaaaaaaaaggtcctagtgggattcaaaccaacatccccatgtataaatcaagcaatattaccaccgcatcagtttacaatgtttcacattttttaaaat 43410415  T
Q  187 tgtttaatatattttctt 204  Q
    |||||||||||| |||||    
T  43410416 tgtttaatatatattctt 43410433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 83 - 198
Target Start/End: Original strand, 13764775 - 13764890
Alignment:
Q  83 attcaaaaaacaaggtcctggtgggtatcaaactaacatccccaggtatcaatcaagcaatattaccaccacgccagttaacaatgttgcacatgttttg 182  Q
    |||||||| |||||||||||||||||||| ||||| |||||||| |  |  |||| |||| ||||||||||| ||||||||||||||||||||| |||||    
T  13764775 attcaaaatacaaggtcctggtgggtatcgaactagcatccccatgatttgatcatgcaaaattaccaccacaccagttaacaatgttgcacatcttttg 13764874  T
Q  183 aaactgtttaatatat 198  Q
    || |||||||||||||    
T  13764875 aatctgtttaatatat 13764890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 125 - 205
Target Start/End: Complemental strand, 4428798 - 4428718
Alignment:
Q  125 caggtatcaatcaagcaatattaccaccacgccagttaacaatgttgcacatgttttgaaactgtttaatatattttcttc 205  Q
    |||||||||| |||||||| |||||||||| |||||||||||| ||| | || |||| |||||||||||||||| ||||||    
T  4428798 caggtatcaaacaagcaattttaccaccacaccagttaacaatattgaatattttttaaaactgtttaatatatattcttc 4428718  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 204
Target Start/End: Original strand, 17549352 - 17549428
Alignment:
Q  128 gtatcaatcaagcaatattaccaccacgccagttaacaatgttgcacatgttttgaaactgtttaatatattttctt 204  Q
    |||||||  |||| |||||||||||||  || ||||||| ||||||| | || |||||||||||||||||| |||||    
T  17549352 gtatcaaataagcgatattaccaccacaacaattaacaacgttgcacgttttgtgaaactgtttaatatatattctt 17549428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 98 - 205
Target Start/End: Original strand, 7011388 - 7011495
Alignment:
Q  98 tcctggtgggtatcaaactaacatccccaggtatcaatcaagcaatattaccaccacgccagttaacaatgttgcacatgttttgaaactgtttaatata 197  Q
    ||||||||||| |  ||| || ||||||| |||||  |||||||||||||||| ||| || ||| |||||||||||||| |||| ||| ||||||| |||    
T  7011388 tcctggtgggttttgaaccaaaatccccatgtatcggtcaagcaatattaccaacacacccgtttacaatgttgcacattttttaaaattgtttaaaata 7011487  T
Q  198 ttttcttc 205  Q
    | ||||||    
T  7011488 tattcttc 7011495  T

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