View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18808_low_2 (Length: 656)

Name: NF18808_low_2
Description: NF18808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18808_low_2
NF18808_low_2
[»] chr8 (13 HSPs)
chr8 (404-648)||(14646481-14646725)
chr8 (18-141)||(14646100-14646223)
chr8 (416-626)||(14651146-14651356)
chr8 (220-345)||(14646307-14646428)
chr8 (25-141)||(16836394-16836509)
chr8 (222-313)||(14637884-14637976)
chr8 (257-345)||(14650969-14651056)
chr8 (440-488)||(12039916-12039964)
chr8 (224-306)||(14631254-14631337)
chr8 (440-489)||(12137835-12137884)
chr8 (440-488)||(12058446-12058494)
chr8 (440-489)||(12079006-12079054)
chr8 (222-278)||(14641401-14641458)


Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-116; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 404 - 648
Target Start/End: Original strand, 14646481 - 14646725
Alignment:
Q  404 gtaaccatgtacaagataattcaatacatgatcaaaatcaatatcgataaatatcaaagtcttgaatgtcattactagaattcaatgaatgagccctaaa 503  Q
    |||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  14646481 gtaaccatctaaaagataattcaatacataatcaaaatcaatatcgataaatatcaaagtcttaaatgtcattattagaattcaatgaatgagccctaaa 14646580  T
Q  504 cgtaaaatgtaaagtgaatatctgagtaccaattttgtggatccatatttttgaacttcttacctcagatcccatcttgtccgaatttctcgctatttaa 603  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  14646581 cgtaaaatctaaagtgaatttctgagtaccaattttgtggatccatatttttgaacttcttacctcagatcccatcctgtccgaatttctcgctatttaa 14646680  T
Q  604 tcaaagaaactacactcgatattaaaatcatagatgatgatgatg 648  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  14646681 tcaaagaaactacactcgatattaaaatcatagatgatgatgatg 14646725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 14646100 - 14646223
Alignment:
Q  18 catgggcgtctcttatagataaatatggtcttgaaggaaatgattggcttgatgcagtgtataatgctcgcaaacaatggggcccctgcttactttcgtg 117  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14646100 catggacgtctcttatagataaatatggtcttgaaggaaatgattgacttgatgcagtgtataatgctcgcaaacaatggggcccctgcttactttcgtg 14646199  T
Q  118 acacattctttgctgctttaactt 141  Q
    ||||||||||||||||||||||||    
T  14646200 acacattctttgctgctttaactt 14646223  T

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Target: chr8; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 416 - 626
Target Start/End: Original strand, 14651146 - 14651356
Alignment:
Q  416 aagataattcaatacatgatcaaaatcaatatcgataaatatcaaagtcttgaatgtcattactagaattcaatgaatgagccctaaacgtaaaatgtaa 515  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||| |||||| |||    
T  14651146 aagataattctatacatgatcaaaatcaatatcgataaatatcaaagtctcgaatgtcattactagaattaaatgaattagccctaaacataaaatctaa 14651245  T
Q  516 agtgaatatctgagtaccaattttgtggatccatatttttgaacttcttacctcagatcccatcttgtccgaatttctcgctatttaatcaaagaaacta 615  Q
    |||| || | ||||||  ||||||||||| | ||  ||||||||||||||||| |||||| | | ||||||||||||||  | |||||| |||||||  |    
T  14651246 agtggatttatgagtaaaaattttgtggaactatccttttgaacttcttacctaagatcctagcctgtccgaatttctcaatttttaattaaagaaatca 14651345  T
Q  616 cactcgatatt 626  Q
    |||||||||||    
T  14651346 cactcgatatt 14651356  T

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Target: chr8; HSP #4
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 220 - 345
Target Start/End: Original strand, 14646307 - 14646428
Alignment:
Q  220 tgaagagactttaatgtgattgtatggtgtctagtgttatcgattaggtatttttaattgagactagttgaacagatttttcaacatgtaattaacagac 319  Q
    ||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||    
T  14646307 tgaagagactttaatgtg----tatggtgtctagtgttatcgattaggtatttttaattgaaactagttgaacagatttttcaacatgtaactagcagac 14646402  T
Q  320 aaagccaatttgaaaagaaaaacaag 345  Q
    ||||||||||||||||| ||||||||    
T  14646403 aaagccaatttgaaaagcaaaacaag 14646428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 25 - 141
Target Start/End: Complemental strand, 16836509 - 16836394
Alignment:
Q  25 gtctcttatagataaatatggtcttgaaggaaatgattggcttgatgcagtgtataatgctcgcaaacaatggggcccctgcttactttcgtgacacatt 124  Q
    ||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||| ||||||| ||||||||||||||||||||    
T  16836509 gtctcttctacataaatatggtcttgaaggaaatgattggcttgaagcagtgtataatgctcggcaacaat-gggccccagcttactttcgtgacacatt 16836411  T
Q  125 ctttgctgctttaactt 141  Q
    |||||||||||||||||    
T  16836410 ctttgctgctttaactt 16836394  T

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Target: chr8; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 222 - 313
Target Start/End: Original strand, 14637884 - 14637976
Alignment:
Q  222 aagagactttaatgtgattgtatg-gtgtctagtgttatcgattaggtatttttaattgagactagttgaacagatttttcaacatgtaatta 313  Q
    |||||||||||||||||||||||  || |||| |||||| ||||||||||||||||||||||| || |||  ||||||| |||||| ||||||    
T  14637884 aagagactttaatgtgattgtattagtatctattgttatggattaggtatttttaattgagacgagatgattagattttacaacatttaatta 14637976  T

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Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 257 - 345
Target Start/End: Original strand, 14650969 - 14651056
Alignment:
Q  257 tatcgattaggtatttttaattgagactagttgaacagatttttcaacatgtaattaacagacaaagccaatttgaaaagaaaaacaag 345  Q
    |||| |||||||||||| |||||| |||||||||||| | |||||||||  |||||| |||||| |||||||| |||||| ||||||||    
T  14650969 tatcaattaggtattttcaattgaaactagttgaaca-aattttcaacaattaattagcagacatagccaattcgaaaagcaaaacaag 14651056  T

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Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 440 - 488
Target Start/End: Original strand, 12039916 - 12039964
Alignment:
Q  440 atcaatatcgataaatatcaaagtcttgaatgtcattactagaattcaa 488  Q
    ||||||||  |||||||||||| ||||||||||||||||||||||||||    
T  12039916 atcaatattaataaatatcaaaatcttgaatgtcattactagaattcaa 12039964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 224 - 306
Target Start/End: Original strand, 14631254 - 14631337
Alignment:
Q  224 gagactttaatgtgattgtatg-gtgtctagtgttatcgattaggtatttttaattgagactagttgaacagatttttcaacat 306  Q
    |||||||| ||||||||||||  || |||| |||||| ||||||||||||||||||||||| || |||  ||||||| ||||||    
T  14631254 gagactttcatgtgattgtattagtatctattgttatggattaggtatttttaattgagacgagatgattagattttacaacat 14631337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 440 - 489
Target Start/End: Complemental strand, 12137884 - 12137835
Alignment:
Q  440 atcaatatcgataaatatcaaagtcttgaatgtcattactagaattcaat 489  Q
    ||||||||| |||||| ||||| ||||||||| |||||||||||||||||    
T  12137884 atcaatatcaataaatttcaaaatcttgaatggcattactagaattcaat 12137835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 440 - 488
Target Start/End: Original strand, 12058446 - 12058494
Alignment:
Q  440 atcaatatcgataaatatcaaagtcttgaatgtcattactagaattcaa 488  Q
    ||||||||  |||| ||||||| ||||||||||||||||||||||||||    
T  12058446 atcaatattaataattatcaaaatcttgaatgtcattactagaattcaa 12058494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 489
Target Start/End: Original strand, 12079006 - 12079054
Alignment:
Q  440 atcaatatcgataaatatcaaagtcttgaatgtcattactagaattcaat 489  Q
    ||||| ||| |||||||||||| ||| |||||||||||||||||||||||    
T  12079006 atcaaaatcaataaatatcaaa-tctagaatgtcattactagaattcaat 12079054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 278
Target Start/End: Original strand, 14641401 - 14641458
Alignment:
Q  222 aagagactttaatgtgattgtat-ggtgtctagtgttatcgattaggtatttttaatt 278  Q
    ||||||||||| ||||||||||| ||| |||||||||||  |||||||||||| ||||    
T  14641401 aagagactttactgtgattgtatcggtatctagtgttatgcattaggtattttcaatt 14641458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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