View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18808_low_4 (Length: 449)
Name: NF18808_low_4
Description: NF18808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18808_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Original strand, 12268458 - 12268889
Alignment:
| Q |
1 |
tggaagtgagagaaatttaaagagttagaaaattgaaatgtaatttaaaaggaaaattataaagcactaataacaaaaagattgttacaacttacaaagt |
100 |
Q |
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| T |
12268458 |
tggaagtgagagaaatttaaagagttagaaaattgaaatgtaatttaaaaggaaaattataaagcactaataacaaaaagattgttacaacgtacaaagt |
12268557 |
T |
|
| Q |
101 |
atgaaacacattttggaaatgttacaaaatcaccatagcagtaacaatttaacaaatgttacaaggtgagtgagtgagtgttactaaaagtcacaaatgc |
200 |
Q |
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| T |
12268558 |
atgaaacacattttggaaatgttacaaaatcaccatatcagtaacaatttaacaaatgttacaaggtgagtgagtgagtgttactaaaagtcacaaatgc |
12268657 |
T |
|
| Q |
201 |
agtagtggctacccatccccccatatcaatattttcatttattactaataaattataaattattttatagaatcgtttgctataaaa-aataaaggtcta |
299 |
Q |
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| T |
12268658 |
agtagtggctacccat--------atcaatattttcatttattactaataaattataaattattttatagaatcgtttgctataaaaaaataaaggtcta |
12268749 |
T |
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| Q |
300 |
atgcaaatatctttttgggtgagtcatctgcaaaatctaaaacatcacaaactggagaattttagtccagattcagaaaagataaatagctagaagagtt |
399 |
Q |
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| T |
12268750 |
atgcaaatatctttttgggtgagtcatctgcaaaatctaaaacatcacaaactggagaattttagtccagattcagaaaagataaatagctagaagagtt |
12268849 |
T |
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| Q |
400 |
atggtagttagtcaagtaaaacaatgcgttgtgatgatgt |
439 |
Q |
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| T |
12268850 |
atggtagttagtcaagtaaaacaatgcgttgtgatgatgt |
12268889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 170 - 283
Target Start/End: Original strand, 12270163 - 12270276
Alignment:
| Q |
170 |
gtgagtgagtgttactaaaagtcacaaatgcagtagtggctacccatccccccatatcaatattttcatttattactaataaattataaattattttata |
269 |
Q |
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| T |
12270163 |
gtgagtaagtgttacaaaaagtcataaatgtagtagtggctaccaatcaccccatataaatattttcatttatttgcaataaattataaattactttaaa |
12270262 |
T |
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| Q |
270 |
gaatcgtttgctat |
283 |
Q |
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|||||||| ||||| |
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| T |
12270263 |
gaatcgttggctat |
12270276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 17032022 - 17032100
Alignment:
| Q |
10 |
gagaaatttaaagagttagaaaattgaaatgtaatttaaaaggaaaattataaagcactaataacaaaaagattgttacaa |
90 |
Q |
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| T |
17032022 |
gagaaatttaaa-agttagaaaattgaaatgtattttaaaaggcaaattataaa-cactaataactaaaagagagttacaa |
17032100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 17562458 - 17562536
Alignment:
| Q |
10 |
gagaaatttaaagagttagaaaattgaaatgtaatttaaaaggaaaattataaagcactaataacaaaaagattgttacaa |
90 |
Q |
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| T |
17562458 |
gagaaatttaaa-agttagaaaattgaaatgtattttaaaaggcaaattataaa-cactaataactaaaagagagttacaa |
17562536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 17030627 - 17030575
Alignment:
| Q |
28 |
gaaaattgaaatgtaatttaaaaggaaaattataaagcactaataacaaaaaga |
81 |
Q |
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| T |
17030627 |
gaaaactgaaatgtattttaaaaggaaaattataaa-cactaataactaaaaga |
17030575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 17561063 - 17561011
Alignment:
| Q |
28 |
gaaaattgaaatgtaatttaaaaggaaaattataaagcactaataacaaaaaga |
81 |
Q |
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||||| ||||||||| |||||||||||||||||||| |||||||||| |||||| |
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| T |
17561063 |
gaaaactgaaatgtattttaaaaggaaaattataaa-cactaataactaaaaga |
17561011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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