View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18808_low_9 (Length: 330)

Name: NF18808_low_9
Description: NF18808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18808_low_9
NF18808_low_9
[»] chr5 (16 HSPs)
chr5 (1-312)||(10218055-10218366)
chr5 (83-289)||(10661417-10661623)
chr5 (81-293)||(10653527-10653739)
chr5 (61-260)||(10664519-10664718)
chr5 (90-297)||(7191683-7191890)
chr5 (12-210)||(10603353-10603551)
chr5 (112-302)||(10742018-10742208)
chr5 (65-213)||(10610363-10610511)
chr5 (12-213)||(10599688-10599889)
chr5 (89-207)||(10549470-10549588)
chr5 (92-212)||(10557600-10557720)
chr5 (7-295)||(10718224-10718512)
chr5 (61-213)||(10748423-10748575)
chr5 (59-135)||(10764618-10764694)
chr5 (4-210)||(10563619-10563825)
chr5 (7-154)||(9837795-9837942)
[»] chr6 (6 HSPs)
chr6 (165-301)||(12956834-12956970)
chr6 (62-276)||(12930929-12931143)
chr6 (62-293)||(12905840-12906071)
chr6 (185-276)||(12947417-12947508)
chr6 (186-293)||(12898344-12898451)
chr6 (62-135)||(12947294-12947367)
[»] chr2 (1 HSPs)
chr2 (62-293)||(17924731-17924962)


Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 10218366 - 10218055
Alignment:
Q  1 cggtcaaaactattttgttggacaagttccaactctaggatggctaaaagatctactattgctaagtttggaatacaactatttaggagacaattcaaca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  10218366 cggtcaaaactattttgttggacaagttccaactctaggatggctaaatgatctactattgctaagtttggaatacaactatttaggtgacaattcaaca 10218267  T
Q  101 aaggatttggagtttttaaaatctttgacaaattgtactaagttgcaagtgctttctataaacaataacaattttggaggcaaattgccaaatttcatag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10218266 aaggatttggagtttttaaaatctttgacaaattgtactaagttgcaagtgctttctataaacaataacaattttggaggcaacttgccaaatttcatag 10218167  T
Q  201 gcaatttatccactgaacttattgagctatatgttgggtataatcagatatcaggaaaaattcctgcagaattaggcaatttaattggcttaactctatt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10218166 gcaatttatccactgaacttattgagctatatgttgggtataatcagatatcaggaaaaattcctgcagaattaggcaatttaattggcttaactctatt 10218067  T
Q  301 gggaatagaaca 312  Q
    |||||| |||||    
T  10218066 gggaatggaaca 10218055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 83 - 289
Target Start/End: Complemental strand, 10661623 - 10661417
Alignment:
Q  83 ttaggagacaattcaacaaaggatttggagtttttaaaatctttgacaaattgtactaagttgcaagtgctttctataaacaataacaattttggaggca 182  Q
    ||||| ||||||||||| ||||||||||||||||| ||| | |||||||| |  |||||  |   |||| ||||||||  || |||  ||||||| || |    
T  10661623 ttaggtgacaattcaactaaggatttggagtttttgaaaaccttgacaaacttcactaaactaagagtgatttctatatccagtaatcattttgggggta 10661524  T
Q  183 aattgccaaatttcataggcaatttatccactgaacttattgagctatatgttgggtataatcagatatcaggaaaaattcctgcagaattaggcaattt 282  Q
    | |||||||||||  ||||||||||||||||| |||||| | ||||||||||||||  |||||  ||||||||||||||||||||||||||||| ||| |    
T  10661523 acttgccaaattttgtaggcaatttatccactcaacttagtcagctatatgttgggggtaatccaatatcaggaaaaattcctgcagaattaggaaatct 10661424  T
Q  283 aattggc 289  Q
    |||||||    
T  10661423 aattggc 10661417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 81 - 293
Target Start/End: Complemental strand, 10653739 - 10653527
Alignment:
Q  81 atttaggagacaattcaacaaaggatttggagtttttaaaatctttgacaaattgtactaagttgcaagtgctttctataaacaataacaattttggagg 180  Q
    |||||||||||||| |||| |||||||| || ||||||||| | |||||||| |||| |||  |    ||| ||||||||    |||| |||||||||||    
T  10653739 atttaggagacaatacaactaaggatttagaatttttaaaaaccttgacaaactgtagtaaactaaccgtgatttctatagcttataataattttggagg 10653640  T
Q  181 caaattgccaaatttcataggcaatttatccactgaacttattgagctatatgttgggtataatcagatatcaggaaaaattcctgcagaattaggcaat 280  Q
     || |||||||||||  ||||||||||||||||| |||||| | ||||||||||||||  ||||||||| || | ||||||||||||||||||||| |||    
T  10653639 taacttgccaaattttgtaggcaatttatccactcaacttagtcagctatatgttgggggtaatcagatgtctgaaaaaattcctgcagaattaggaaat 10653540  T
Q  281 ttaattggcttaa 293  Q
     ||||||| ||||    
T  10653539 ctaattggtttaa 10653527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 61 - 260
Target Start/End: Complemental strand, 10664718 - 10664519
Alignment:
Q  61 gctaagtttggaatacaactatttaggagacaattcaacaaaggatttggagtttttaaaatctttgacaaattgtactaagttgcaagtgctttctata 160  Q
    ||||||| |||||| ||||  |||||| ||||| ||||| |||||||||||||| ||||| || ||||| ||||||| ||   | |||||| ||||||||    
T  10664718 gctaagtctggaattcaacagtttaggtgacaactcaactaaggatttggagttcttaaagtccttgacgaattgtagtagactacaagtgatttctata 10664619  T
Q  161 aacaataacaattttggaggcaaattgccaaatttcataggcaatttatccactgaacttattgagctatatgttgggtataatcagatatcaggaaaaa 260  Q
      |||||| |||||||||| ||||||| |||||||| ||||||||||||||| | |||||| |   ||||||||||||  |||||| |||||||||||||    
T  10664618 tgcaataataattttggagccaaattgacaaatttcgtaggcaatttatccaatcaacttagttgcctatatgttgggggtaatcacatatcaggaaaaa 10664519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 90 - 297
Target Start/End: Original strand, 7191683 - 7191890
Alignment:
Q  90 acaattcaacaaaggatttggagtttttaaaatctttgacaaattgtactaagttgcaagtgctttctataaacaataacaattttggaggcaaattgcc 189  Q
    ||||||| || |||||||| |||||||||||||| |||||||| |||| |||  | | |||| ||||||||  |  ||| ||||||||||| || |||||    
T  7191683 acaattccactaaggatttagagtttttaaaatccttgacaaactgtagtaaactactagtgttttctatatcctttaataattttggaggtaatttgcc 7191782  T
Q  190 aaatttcataggcaatttatccactgaacttattgagctatatgttgggtataatcagatatcaggaaaaattcctgcagaattaggcaatttaattggc 289  Q
    ||||| ||| || |||||||||||| ||||||   | ||| || |||| | ||||  |||||||||||||||||||| ||||||||| ||| ||||||||    
T  7191783 aaattccattgggaatttatccactcaacttaggcaactacatcttggatgtaatatgatatcaggaaaaattcctgaagaattaggaaatctaattggc 7191882  T
Q  290 ttaactct 297  Q
    ||||||||    
T  7191883 ttaactct 7191890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 12 - 210
Target Start/End: Original strand, 10603353 - 10603551
Alignment:
Q  12 attttgttggacaagttccaactctaggatggctaaaagatctactattgctaagtttggaatacaactatttaggagacaattcaacaaaggatttgga 111  Q
    ||||||||||||||||||||| ||||||   ||||||||||||    ||||||| |||||||   |||  |||||| ||||| |||||||  ||||||||    
T  10603353 attttgttggacaagttccaagtctagggaagctaaaagatctttatttgctaaatttggaaatgaacattttaggtgacaactcaacaattgatttgga 10603452  T
Q  112 gtttttaaaatctttgacaaattgtactaagttgcaagtgctttctataaacaataacaattttggaggcaaattgccaaatttcataggcaatttatc 210  Q
    |||||||||||| |||||||| |||| ||||||||||   || ||| ||| |||||| ||||||||||| |  |||| |||||  ||||| ||||||||    
T  10603453 gtttttaaaatcattgacaaactgtagtaagttgcaatcactatctttaaccaataataattttggaggtagtttgcaaaattctataggaaatttatc 10603551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 112 - 302
Target Start/End: Complemental strand, 10742208 - 10742018
Alignment:
Q  112 gtttttaaaatctttgacaaattgtactaagttgcaagtgctttctataaacaataacaattttggaggcaaattgccaaatttcataggcaatttatcc 211  Q
    |||||||| || |||||||||||||||||| ||  || || |||| |||     ||| ||||| ||||| || || ||||||| |||||||||||||||     
T  10742208 gtttttaagatatttgacaaattgtactaaattaaaattgttttcgatagctggtaataatttcggaggtaattttccaaattccataggcaatttatca 10742109  T
Q  212 actgaacttattgagctatatgttgggtataatcagatatcaggaaaaattcctgcagaattaggcaatttaattggcttaactctattgg 302  Q
     |||||||||   | |||||| | ||| | |||||||||||||||||||||||||||||||||||  || || ||||||||| ||| ||||    
T  10742108 gctgaacttaaacaactatatataggggaaaatcagatatcaggaaaaattcctgcagaattaggacatctagttggcttaattctcttgg 10742018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 65 - 213
Target Start/End: Original strand, 10610363 - 10610511
Alignment:
Q  65 agtttggaatacaactatttaggagacaattcaacaaaggatttggagtttttaaaatctttgacaaattgtactaagttgcaagtgctttctataaaca 164  Q
    |||||||||||||||||||| ||  |||||||||| |  ||||| ||||||||||||| ||||||||| |||| |||  |  ||  ||||||||||   |    
T  10610363 agtttggaatacaactatttcggtaacaattcaactatagatttagagtttttaaaatatttgacaaactgtagtaaactagaaaagctttctatatcta 10610462  T
Q  165 ataacaattttggaggcaaattgccaaatttcataggcaatttatccac 213  Q
    |||| || |||||||| |  |||||||||||||| ||||||||||||||    
T  10610463 ataataagtttggaggtagtttgccaaatttcattggcaatttatccac 10610511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 213
Target Start/End: Original strand, 10599688 - 10599889
Alignment:
Q  12 attttgttggacaagttccaactctaggatggctaaaagatctactattgctaagtttggaatacaactatttaggagacaattcaacaaaggatttgga 111  Q
    ||||||||||||||||||||| ||||||   ||||||||||||    ||||||| |||||||   |||  |||||| ||||  ||||||| ||||||| |    
T  10599688 attttgttggacaagttccaagtctagggaagctaaaagatctttatttgctaaatttggaaatgaacattttaggtgacagctcaacaatggatttgca 10599787  T
Q  112 gtttttaaaatctttgacaaattgtactaagttgcaagtgctttctataaacaataacaattttggaggcaaattgccaaatttcataggcaatttatcc 211  Q
    |||||| || || |||||||| |||| ||||||||||  ||| ||| ||| | |||| ||||||||||| |  |||| |||||  || || |||||||||    
T  10599788 gtttttgaagtcattgacaaactgtagtaagttgcaatcgctatctttaacctataataattttggaggtagtttgcaaaattctattggaaatttatcc 10599887  T
Q  212 ac 213  Q
    ||    
T  10599888 ac 10599889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 207
Target Start/End: Original strand, 10549470 - 10549588
Alignment:
Q  89 gacaattcaacaaaggatttggagtttttaaaatctttgacaaattgtactaagttgcaagtgctttctataaacaataacaattttggaggcaaattgc 188  Q
    ||||||||||| |||||||| || ||||||||| | ||||||||||||| ||| |||||||   ||||||||  | |||| ||||||||||| |  ||||    
T  10549470 gacaattcaactaaggatttagaatttttaaaaccattgacaaattgtagtaatttgcaagcattttctatatcccataataattttggaggtagtttgc 10549569  T
Q  189 caaatttcataggcaattt 207  Q
    ||| ||||||||| |||||    
T  10549570 caagtttcataggtaattt 10549588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 92 - 212
Target Start/End: Original strand, 10557600 - 10557720
Alignment:
Q  92 aattcaacaaaggatttggagtttttaaaatctttgacaaattgtactaagttgcaagtgctttctataaacaataacaattttggaggcaaattgccaa 191  Q
    |||||||| |||||||||   ||||||||||| ||||| || |||| |||||||||||||  |||||||  | |||| ||||||||||| |  |||||||    
T  10557600 aattcaactaaggatttgatttttttaaaatcattgactaactgtagtaagttgcaagtgtgttctatatcccataataattttggaggtagtttgccaa 10557699  T
Q  192 atttcataggcaatttatcca 212  Q
    ||||   ||||||||||||||    
T  10557700 atttggcaggcaatttatcca 10557720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 295
Target Start/End: Complemental strand, 10718512 - 10718224
Alignment:
Q  7 aaactattttgttggacaagttccaactctaggatggctaaaagatctactattgctaagtttggaatacaactatttaggagacaattcaacaaaggat 106  Q
    |||| |||| |||||||||||||||| | ||||   | || || |||| | ||| |||| |||| |||  ||| ||||||| || || ||||| || ||     
T  10718512 aaacaatttggttggacaagttccaagtataggggagttacaaaatcttcgatttctaaatttgcaatcaaacaatttaggtgaaaactcaaccaaagaa 10718413  T
Q  107 ttggagtttttaaaatctttgacaaattgtactaagttgcaagtgctttctataaacaataacaattttggaggcaaattgccaaatttcataggcaatt 206  Q
    |||| ||||||||| || ||| |||| ||||||||  |  || || |||||||| | ||||| | ||||||||| || || ||||||| | | || ||||    
T  10718412 ttggtgtttttaaattcgttggcaaactgtactaaactagaattgatttctatatataataatagttttggaggtaattttccaaattccttgggaaatt 10718313  T
Q  207 tatccactgaacttattgagctatatgttgggtataatcagatatcaggaaaaattcctgcagaattaggcaatttaattggcttaact 295  Q
    |||||||| || ||| ||  ||| || |||||   ||||| ||||||||||||||||| |||||||||||  | ||| |||||||||||    
T  10718312 tatccactcaatttagtgtactagatcttggggtaaatcatatatcaggaaaaattccggcagaattaggatacttagttggcttaact 10718224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 213
Target Start/End: Complemental strand, 10748575 - 10748423
Alignment:
Q  61 gctaagtttggaatacaactatttaggagacaattcaacaaaggatttggagtttttaaaatctttgacaaattgtactaagttgcaagtgctttctata 160  Q
    ||||| ||||||| |||||||||| ||  |||||||||| |  ||||| ||||||||||| | |||||||||||||| |||  |  ||||| ||||||||    
T  10748575 gctaaatttggaagacaactatttcggtaacaattcaactatcgatttagagtttttaaagtatttgacaaattgtagtaaactagaagtggtttctata 10748476  T
Q  161 aacaataacaattttggaggcaaattgccaaatttcataggcaatttatccac 213  Q
       ||||| || |||||||| |  |||||||||| ||| |||| |||||||||    
T  10748475 tgtaataataagtttggaggtagtttgccaaattccattggcagtttatccac 10748423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 135
Target Start/End: Complemental strand, 10764694 - 10764618
Alignment:
Q  59 ttgctaagtttggaatacaactatttaggagacaattcaacaaaggatttggagtttttaaaatctttgacaaattg 135  Q
    ||||||| ||||||| | ||| ||||||| |||||||| |||| |||||| ||||||||||||| ||||||||||||    
T  10764694 ttgctaaatttggaagaaaacaatttaggtgacaattccacaatggatttagagtttttaaaatatttgacaaattg 10764618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 210
Target Start/End: Original strand, 10563619 - 10563825
Alignment:
Q  4 tcaaaactattttgttggacaagttccaactctaggatggctaaaagatctactattgctaagtttggaatacaactatttaggagacaattcaacaaag 103  Q
    |||||||||||| || ||||||||||||| |||||    | || |||||||    | ||||||||| | ||||||| |||||||  |||||||||  |      
T  10563619 tcaaaactatttggtgggacaagttccaagtctagagaagttacaagatctttactggctaagttttggatacaacaatttaggtaacaattcaattata 10563718  T
Q  104 gatttggagtttttaaaatctttgacaaattgtactaagttgcaagtgctttctataaacaataacaattttggaggcaaattgccaaatttcataggca 203  Q
    ||||| ||||||||||| | |||||||||||||| |||  |  || ||||||| |||     ||| |||||||||||  | |||||||||||||| ||||    
T  10563719 gatttagagtttttaaactatttgacaaattgtagtaaactagaaatgctttcgatagcttctaataattttggaggtcatttgccaaatttcattggca 10563818  T
Q  204 atttatc 210  Q
    |||||||    
T  10563819 atttatc 10563825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 154
Target Start/End: Complemental strand, 9837942 - 9837795
Alignment:
Q  7 aaactattttgttggacaagttccaactctaggatggctaaaagatctactattgctaagtttggaatacaactatttaggagacaattcaacaaaggat 106  Q
    |||| ||||||||||||||||||||| ||||||   |||| |||||||    ||||||| | | |||   |||  | |||| ||||||||||| ||||||    
T  9837942 aaaccattttgttggacaagttccaagtctagggaagctacaagatcttaatttgctaaatcttgaaatgaacattctaggtgacaattcaactaaggat 9837843  T
Q  107 ttggagtttttaaaatctttgacaaattgtactaagttgcaagtgctt 154  Q
    || | |||||| ||| || |||||||||||| ||| || |||||||||    
T  9837842 ttagggtttttgaaaactatgacaaattgtagtaacttacaagtgctt 9837795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 165 - 301
Target Start/End: Original strand, 12956834 - 12956970
Alignment:
Q  165 ataacaattttggaggcaaattgccaaatttcataggcaatttatccactgaacttattgagctatatgttgggtataatcagatatcaggaaaaattcc 264  Q
    |||| |||||||||||| | |||||||||| |||||| ||||||||||||||||||||| | || ||| | ||| ||||||| |||||||||||||||||    
T  12956834 ataataattttggaggccatttgccaaattccatagggaatttatccactgaacttattcaactgtatatgggggataatcaaatatcaggaaaaattcc 12956933  T
Q  265 tgcagaattaggcaatttaattggcttaactctattg 301  Q
    ||||||||| ||   | |||||||||||| |||||||    
T  12956934 tgcagaatttggacgtctaattggcttaattctattg 12956970  T

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Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 62 - 276
Target Start/End: Original strand, 12930929 - 12931143
Alignment:
Q  62 ctaagtttggaatacaactatttaggagacaattcaacaaaggatttggagtttttaaaatctttgacaaattgtactaagttgcaagtgctttctataa 161  Q
    ||||||||||||   ||| |||||||  |||||||||| | |||||| ||||||||||||| |||||||||||| | |||  |  | |||||||| |||     
T  12930929 ctaagtttggaagttaacaatttaggtaacaattcaactatggatttagagtttttaaaatatttgacaaattgcagtaaactatacgtgctttcgatat 12931028  T
Q  162 acaataacaattttggaggcaaattgccaaatttcataggcaatttatccactgaacttattgagctatatgttgggtataatcagatatcaggaaaaat 261  Q
       |||| |||||||||||  | |||||||||| ||||||||||||||| |||||||||   || |||||| | |||  ||||  |||||||||||||||    
T  12931029 cttataataattttggaggtcatttgccaaattccataggcaatttatcgactgaacttccagaactatatatggggggtaatatgatatcaggaaaaat 12931128  T
Q  262 tcctgcagaattagg 276  Q
    |||||||||||||||    
T  12931129 tcctgcagaattagg 12931143  T

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Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 62 - 293
Target Start/End: Original strand, 12905840 - 12906071
Alignment:
Q  62 ctaagtttggaatacaactatttaggagacaattcaacaaaggatttggagtttttaaaatctttgacaaattgtactaagttgcaagtgctttctataa 161  Q
    |||||||||| || |||| |||||||  ||| |||||| |||||||| ||||||||||||| |||||||||||| | |||  |  | |||||||| |||     
T  12905840 ctaagtttgggattcaacaatttaggtaacatttcaactaaggatttagagtttttaaaatatttgacaaattgcagtaaactatacgtgctttcaatag 12905939  T
Q  162 acaataacaattttggaggcaaattgccaaatttcataggcaatttatccactgaacttattgagctatatgttgggtataatcagatatcaggaaaaat 261  Q
    |   ||| |||||||||||  | |||||||||| ||||||||| || |||||||||||||   |  ||| | | |||  |||||||||||||||||||||    
T  12905940 attctaataattttggaggacatttgccaaattccataggcaacttttccactgaacttaaatatttatttatggggggtaatcagatatcaggaaaaat 12906039  T
Q  262 tcctgcagaattaggcaatttaattggcttaa 293  Q
    |||||  |||||||| ||| || |||||||||    
T  12906040 tcctgacgaattaggaaatctagttggcttaa 12906071  T

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Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 185 - 276
Target Start/End: Original strand, 12947417 - 12947508
Alignment:
Q  185 ttgccaaatttcataggcaatttatccactgaacttattgagctatatgttgggtataatcagatatcaggaaaaattcctgcagaattagg 276  Q
    |||||||||| ||||||||||||||||||||||||| | || |||||| | |||  |||| |||||||||||||||||||||||||||||||    
T  12947417 ttgccaaattccataggcaatttatccactgaacttctagaactatatatggggggtaataagatatcaggaaaaattcctgcagaattagg 12947508  T

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Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 186 - 293
Target Start/End: Original strand, 12898344 - 12898451
Alignment:
Q  186 tgccaaatttcataggcaatttatccactgaacttattgagctatatgttgggtataatcagatatcaggaaaaattcctgcagaattaggcaatttaat 285  Q
    ||||||||| |||||||||||| ||||||||||||    | |||| | | |||  ||||||||||||||||||||||||||||||||||||  || || |    
T  12898344 tgccaaattccataggcaatttttccactgaacttcaacaactatttatggggggtaatcagatatcaggaaaaattcctgcagaattaggatatctagt 12898443  T
Q  286 tggcttaa 293  Q
    ||||||||    
T  12898444 tggcttaa 12898451  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 135
Target Start/End: Original strand, 12947294 - 12947367
Alignment:
Q  62 ctaagtttggaatacaactatttaggagacaattcaacaaaggatttggagtttttaaaatctttgacaaattg 135  Q
    |||||||||||||  ||| |||||||  ||| |||||| | ||| || ||||||||||||| ||||||||||||    
T  12947294 ctaagtttggaatttaacaatttaggtaacatttcaactatggacttagagtttttaaaatatttgacaaattg 12947367  T

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Target: chr2 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 62 - 293
Target Start/End: Complemental strand, 17924962 - 17924731
Alignment:
Q  62 ctaagtttggaatacaactatttaggagacaattcaacaaaggatttggagtttttaaaatctttgacaaattgtactaagttgcaagtgctttctataa 161  Q
    |||| ||||||| | ||| ||||||| || |||||||| | |||||| ||||||||||||| |||||||||||| | |||  | ||   | |||| |||     
T  17924962 ctaaatttggaagaaaacaatttaggtgataattcaactatggatttagagtttttaaaatatttgacaaattgcagtaaactacacaagttttcgatat 17924863  T
Q  162 acaataacaattttggaggcaaattgccaaatttcataggcaatttatccactgaacttattgagctatatgttgggtataatcagatatcaggaaaaat 261  Q
       |||| |||||||||||  | |||||||||| |||||| |||||||||||||||||||   | |||||| | |||  |||||||||||||||||||||    
T  17924862 cttataataattttggaggtcatttgccaaattccatagggaatttatccactgaacttaaacaactatatatggggggtaatcagatatcaggaaaaat 17924763  T
Q  262 tcctgcagaattaggcaatttaattggcttaa 293  Q
    ||||||||||||||| | | || |||||||||    
T  17924762 tcctgcagaattaggaagtgtagttggcttaa 17924731  T

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