View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18809_high_11 (Length: 519)

Name: NF18809_high_11
Description: NF18809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18809_high_11
NF18809_high_11
[»] chr3 (16 HSPs)
chr3 (19-511)||(17103551-17104047)
chr3 (180-245)||(38074673-38074738)
chr3 (180-245)||(43132632-43132696)
chr3 (197-245)||(8140247-8140295)
chr3 (187-254)||(45411024-45411090)
chr3 (180-246)||(7138396-7138462)
chr3 (183-246)||(30672584-30672647)
chr3 (191-246)||(50970620-50970675)
chr3 (191-246)||(51073756-51073811)
chr3 (180-246)||(30672519-30672585)
chr3 (182-236)||(35404377-35404431)
chr3 (180-245)||(48402099-48402164)
chr3 (193-221)||(7138471-7138499)
chr3 (180-244)||(33700195-33700259)
chr3 (193-257)||(40963786-40963850)
chr3 (190-238)||(43132579-43132626)
[»] chr8 (14 HSPs)
chr8 (190-257)||(17855831-17855898)
chr8 (180-258)||(32549690-32549768)
chr8 (183-257)||(32549767-32549841)
chr8 (180-246)||(33058650-33058716)
chr8 (192-257)||(19735794-19735859)
chr8 (188-246)||(19735720-19735778)
chr8 (180-241)||(33057818-33057878)
chr8 (191-246)||(3207504-3207559)
chr8 (190-228)||(33058606-33058644)
chr8 (183-221)||(33059842-33059880)
chr8 (180-241)||(33059879-33059941)
chr8 (180-245)||(33052843-33052907)
chr8 (180-245)||(33057938-33058002)
chr8 (188-228)||(33059233-33059273)
[»] chr1 (6 HSPs)
chr1 (180-242)||(26533655-26533717)
chr1 (183-246)||(10357939-10358002)
chr1 (202-246)||(26090226-26090270)
chr1 (202-258)||(34111097-34111153)
chr1 (180-246)||(12018487-12018553)
chr1 (196-257)||(37913216-37913277)
[»] chr4 (17 HSPs)
chr4 (200-260)||(51267161-51267221)
chr4 (180-260)||(13412653-13412734)
chr4 (189-257)||(13412739-13412807)
chr4 (191-259)||(51267067-51267135)
chr4 (188-245)||(44550132-44550189)
chr4 (191-246)||(24970806-24970861)
chr4 (189-259)||(23292358-23292428)
chr4 (183-232)||(53359878-53359927)
chr4 (179-239)||(46462393-46462453)
chr4 (194-246)||(53359813-53359865)
chr4 (191-259)||(54569671-54569739)
chr4 (183-257)||(5536738-5536813)
chr4 (180-241)||(5536812-5536874)
chr4 (191-257)||(54569587-54569653)
chr4 (193-246)||(22220108-22220161)
chr4 (189-222)||(26066450-26066483)
chr4 (180-221)||(30206540-30206581)
[»] chr5 (7 HSPs)
chr5 (180-260)||(6167948-6168028)
chr5 (191-246)||(7212355-7212410)
chr5 (191-258)||(26636807-26636873)
chr5 (191-246)||(26636891-26636946)
chr5 (191-247)||(731519-731575)
chr5 (191-246)||(34255246-34255301)
chr5 (183-221)||(7212307-7212345)
[»] chr7 (11 HSPs)
chr7 (192-258)||(10184036-10184102)
chr7 (188-246)||(25878396-25878454)
chr7 (188-248)||(22540841-22540901)
chr7 (188-257)||(34877667-34877736)
chr7 (180-246)||(42291522-42291588)
chr7 (195-259)||(22779197-22779261)
chr7 (202-257)||(29235903-29235958)
chr7 (191-257)||(6622556-6622622)
chr7 (189-227)||(7430125-7430163)
chr7 (193-253)||(30225017-30225077)
chr7 (205-245)||(46816468-46816508)
[»] chr2 (11 HSPs)
chr2 (191-259)||(15577642-15577710)
chr2 (192-246)||(35242021-35242075)
chr2 (193-246)||(43679915-43679968)
chr2 (183-223)||(24762457-24762497)
chr2 (197-248)||(41190900-41190951)
chr2 (184-258)||(44659061-44659135)
chr2 (193-250)||(43680730-43680786)
chr2 (189-221)||(4860270-4860302)
chr2 (191-259)||(8393684-8393752)
chr2 (191-259)||(36847231-36847299)
chr2 (191-259)||(44462188-44462256)
[»] chr6 (6 HSPs)
chr6 (180-245)||(31987824-31987890)
chr6 (183-221)||(24265506-24265544)
chr6 (180-246)||(24265543-24265609)
chr6 (183-216)||(32432291-32432324)
chr6 (193-245)||(29904284-29904336)
chr6 (189-221)||(32974260-32974292)


Alignment Details
Target: chr3 (Bit Score: 455; Significance: 0; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 19 - 511
Target Start/End: Original strand, 17103551 - 17104047
Alignment:
Q  19 ggtgctgctgctgttggctcaaaggtttcacctgctgatgctgcctatggagaagctggtatttctgcaaa-cacttcttcattttagatgacaaaatca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  17103551 ggtgctgctgctgttggctcaaaggtttcacctgctgatgctgcctatggagaagctggtatttctgcaaaacacttcttcattttagatgacaaaatca 17103650  T
Q  118 attatgaacctaagattagaaaattgtattctaattctaattttattaaatgtgacaaaagttattataatccagatacatcagttatttaatgaatctg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17103651 attatgaacctaagattagaaaattgtattctaattctaattttattaaatgtgacaaaagttattataatccagatacatcagttatttaatgaatctg 17103750  T
Q  218 aaaagacaaaagttgtttataaatgtgactagagggagtataacttagagtacgagtcgtctgatctttaatccaatggtggagatttgagactattcgt 317  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17103751 aaaagacaaaagttgtttataaatgttactagagggagtataacttagagtacgagtcgtctgatctttaatccaatggtggagatttgagactattcgt 17103850  T
Q  318 acagttaaggaatttcaac---tgttggatgaagattagacgatacatattctaatattatattatgtttttctttaaaatataacttagaatacgagtt 414  Q
    |||||||||||||||||||   ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||    
T  17103851 acagttaaggaatttcaactgttgttggatgaagattagacgatacatattctaaaattatattatatttttctttaaaatacaacttagaatacgagtt 17103950  T
Q  415 gtctaatatttaatcgaacggtggagatttgagactgcctgaatctgtgactgcagaggatttaattccaatagactctatgtttgaaatgatgatg 511  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  17103951 gtctaatatttaatcgaacggtggagatttgagactgcctgaatctgtgactgcagagaatttaattccaatagactctatgtttgaaatgatgatg 17104047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 180 - 245
Target Start/End: Original strand, 38074673 - 38074738
Alignment:
Q  180 tattataatccagatacatcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtga 245  Q
    |||||||||  |||||||| ||||||||||||||||||||||   |||||||||||||||||||||    
T  38074673 tattataatttagatacataagttatttaatgaatctgaaaatgaaaaagttgtttataaatgtga 38074738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 180 - 245
Target Start/End: Original strand, 43132632 - 43132696
Alignment:
Q  180 tattataatccagatacatcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtga 245  Q
    ||||||||| |||||| || ||||||||||||||||| |||| | |||||||||||||||||||||    
T  43132632 tattataattcagatatattagttatttaatgaatct-aaaacataaaagttgtttataaatgtga 43132696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 245
Target Start/End: Original strand, 8140247 - 8140295
Alignment:
Q  197 atcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtga 245  Q
    |||| ||||||||||||| |||||| |||||||||||||||||||||||    
T  8140247 atcatttatttaatgaatttgaaaaaacaaaagttgtttataaatgtga 8140295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 187 - 254
Target Start/End: Original strand, 45411024 - 45411090
Alignment:
Q  187 atccagatacatcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtgactagaggga 254  Q
    |||| ||||||||||||||||||||||||| |||||  || |||| |||||||||||||| |||||||    
T  45411024 atcccgatacatcagttatttaatgaatct-aaaaggaaatagttatttataaatgtgaccagaggga 45411090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 246
Target Start/End: Complemental strand, 7138462 - 7138396
Alignment:
Q  180 tattataatccagatacatcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtgac 246  Q
    |||||||||| ||||||||| |||||||||||||| ||||||   |||||||| |||||||| ||||    
T  7138462 tattataatcgagatacatcggttatttaatgaatttgaaaaaggaaaagttgcttataaatatgac 7138396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 246
Target Start/End: Original strand, 30672584 - 30672647
Alignment:
Q  183 tataatccagatacatcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtgac 246  Q
    |||| |||| ||| |||||||||||||| |||||  ||| ||||||||| ||||||||||||||    
T  30672584 tatagtccaaatatatcagttatttaataaatcttgaaaaacaaaagttatttataaatgtgac 30672647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 246
Target Start/End: Original strand, 50970620 - 50970675
Alignment:
Q  191 agatacatcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtgac 246  Q
    |||||||||| ||||||||||||||||||||   |||||||| ||||||| |||||    
T  50970620 agatacatcaattatttaatgaatctgaaaaagtaaaagttgcttataaacgtgac 50970675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 246
Target Start/End: Original strand, 51073756 - 51073811
Alignment:
Q  191 agatacatcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtgac 246  Q
    |||||||||| ||||||||||||||||||||   |||||||| ||||||| |||||    
T  51073756 agatacatcaattatttaatgaatctgaaaaagtaaaagttgcttataaacgtgac 51073811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 180 - 246
Target Start/End: Complemental strand, 30672585 - 30672519
Alignment:
Q  180 tattataatccagatacatcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtgac 246  Q
    ||||||||| ||||||||||| ||||||||||||||| ||||   |||| ||| |||||||| ||||    
T  30672585 tattataattcagatacatcaattatttaatgaatctaaaaatggaaaatttgcttataaatatgac 30672519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 182 - 236
Target Start/End: Original strand, 35404377 - 35404431
Alignment:
Q  182 ttataatccagatacatcagttatttaatgaatctgaaaagacaaaagttgttta 236  Q
    ||||| |||||||||||||| |||||||| ||||| |||| |||||| |||||||    
T  35404377 ttatagtccagatacatcagctatttaattaatctaaaaaaacaaaaattgttta 35404431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 245
Target Start/End: Original strand, 48402099 - 48402164
Alignment:
Q  180 tattataatccagatacatcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtga 245  Q
    ||||||| ||| ||||||||  ||||||||||||||||||||  ||| | ||| ||||||||||||    
T  48402099 tattatagtccggatacatccattatttaatgaatctgaaaaaccaatatttgattataaatgtga 48402164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 221
Target Start/End: Original strand, 7138471 - 7138499
Alignment:
Q  193 atacatcagttatttaatgaatctgaaaa 221  Q
    |||||||||||||||||||||||||||||    
T  7138471 atacatcagttatttaatgaatctgaaaa 7138499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 180 - 244
Target Start/End: Complemental strand, 33700259 - 33700195
Alignment:
Q  180 tattataatccagatacatcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtg 244  Q
    ||||||| | ||||||||||  ||||||||||||||| |||| |||||| ||| ||||| |||||    
T  33700259 tattatatttcagatacatccattatttaatgaatctaaaaaaacaaaaattgcttatacatgtg 33700195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 257
Target Start/End: Original strand, 40963786 - 40963850
Alignment:
Q  193 atacatcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtgactagagggagta 257  Q
    |||||| | ||||||||||||||| ||||   || |||||||||||||||||||  |||||||||    
T  40963786 atacattaattatttaatgaatctcaaaaaggaatagttgtttataaatgtgacatgagggagta 40963850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 43132626 - 43132579
Alignment:
Q  190 cagatacatcagttatttaatgaatctgaaaagacaaaagttgtttata 238  Q
    ||||||||||| ||||||||| |||||||||| |||||| |||||||||    
T  43132626 cagatacatcacttatttaataaatctgaaaa-acaaaaattgtttata 43132579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 190 - 257
Target Start/End: Complemental strand, 17855898 - 17855831
Alignment:
Q  190 cagatacatcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtgactagagggagta 257  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||| | ||||||||    
T  17855898 cagatacatcaattatttaatgaatctgaaaaaacaaaagttgtttataaacgtgaccaaagggagta 17855831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 180 - 258
Target Start/End: Complemental strand, 32549768 - 32549690
Alignment:
Q  180 tattataatccagatacatcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtgactagagggagtat 258  Q
    ||||||| ||||||||||||||||||||||||||||| ||||  |||||||||  ||||||||||||  ||||||||||    
T  32549768 tattatattccagatacatcagttatttaatgaatctaaaaaagcaaaagttgcgtataaatgtgaccggagggagtat 32549690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 183 - 257
Target Start/End: Original strand, 32549767 - 32549841
Alignment:
Q  183 tataatccagatacatcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtgactagagggagta 257  Q
    |||| ||||||||||||  ||||||||||||||| ||||  ||||||||| ||||||||||||| ||||||||||    
T  32549767 tatagtccagatacatcgtttatttaatgaatctcaaaaagcaaaagttgcttataaatgtgaccagagggagta 32549841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 180 - 246
Target Start/End: Original strand, 33058650 - 33058716
Alignment:
Q  180 tattataatccagatacatcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtgac 246  Q
    ||||||||| ||||| ||||| ||||||||| ||||| |||| ||||||||||||||||||| ||||    
T  33058650 tattataattcagatgcatcaattatttaataaatctaaaaaaacaaaagttgtttataaatctgac 33058716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 192 - 257
Target Start/End: Original strand, 19735794 - 19735859
Alignment:
Q  192 gatacatcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtgactagagggagta 257  Q
    ||||||||| ||||||||||||| |||||||  |||||||| |||||||||||||  |||||||||    
T  19735794 gatacatcacttatttaatgaatatgaaaaggtaaaagttgcttataaatgtgaccggagggagta 19735859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 246
Target Start/End: Complemental strand, 19735778 - 19735720
Alignment:
Q  188 tccagatacatcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtgac 246  Q
    ||||||||||||| || |||||||||||| ||||  ||||||||| |||||||||||||    
T  19735778 tccagatacatcaattgtttaatgaatctaaaaaagcaaaagttgcttataaatgtgac 19735720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 33057818 - 33057878
Alignment:
Q  180 tattataatccagatacatcagttatttaatgaatctgaaaagacaaaagttgtttataaat 241  Q
    ||||||||| ||||| ||||| ||||||||| ||||| |||| |||||||||||||||||||    
T  33057818 tattataattcagatgcatcaattatttaataaatctaaaaa-acaaaagttgtttataaat 33057878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 246
Target Start/End: Complemental strand, 3207559 - 3207504
Alignment:
Q  191 agatacatcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtgac 246  Q
    ||||| |||| |||| ||| ||||||||||| |||| |||||||||||||||||||    
T  3207559 agatatatcaattatgtaaagaatctgaaaacacaatagttgtttataaatgtgac 3207504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 190 - 228
Target Start/End: Complemental strand, 33058644 - 33058606
Alignment:
Q  190 cagatacatcagttatttaatgaatctgaaaagacaaaa 228  Q
    ||||||||||| |||||||||||||||||||| ||||||    
T  33058644 cagatacatcaattatttaatgaatctgaaaaaacaaaa 33058606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 33059880 - 33059842
Alignment:
Q  183 tataatccagatacatcagttatttaatgaatctgaaaa 221  Q
    |||| ||||||||||||| ||||||||||||||||||||    
T  33059880 tatagtccagatacatcaattatttaatgaatctgaaaa 33059842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 33059879 - 33059941
Alignment:
Q  180 tattataatccagatacatcagttatttaatgaatctgaaaaga-caaaagttgtttataaat 241  Q
    ||||||||| ||||| ||||| ||||||||| ||||| |||| | ||||||||||||||||||    
T  33059879 tattataattcagatgcatcaattatttaataaatctaaaaaaaacaaaagttgtttataaat 33059941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 245
Target Start/End: Original strand, 33052843 - 33052907
Alignment:
Q  180 tattataatccagatacatcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtga 245  Q
    ||||||||| || || ||||| ||||||||| ||||| |||| |||||| ||||||||||||||||    
T  33052843 tattataattcaaatgcatcaattatttaataaatctaaaaa-acaaaaattgtttataaatgtga 33052907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 245
Target Start/End: Original strand, 33057938 - 33058002
Alignment:
Q  180 tattataatccagatacatcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtga 245  Q
    ||||||||| ||||||||||| ||||||||| ||||| | || ||||  |||||||||||||||||    
T  33057938 tattataattcagatacatcaattatttaataaatct-acaaaacaatggttgtttataaatgtga 33058002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 33059273 - 33059233
Alignment:
Q  188 tccagatacatcagttatttaatgaatctgaaaagacaaaa 228  Q
    |||| |||||||| ||||||||||||||||||||| |||||    
T  33059273 tccaaatacatcaattatttaatgaatctgaaaaggcaaaa 33059233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 26533655 - 26533717
Alignment:
Q  180 tattataatccagatacatcagttatttaatgaatctgaaaagacaaaagttgtttataaatg 242  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||||| |||| |||||||    
T  26533655 tattataattcagatacatcagttatttaatgaatctgaaaaaacaaaaggtgttcataaatg 26533717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 10358002 - 10357939
Alignment:
Q  183 tataatccagatacatcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtgac 246  Q
    |||| ||||||||||||| |||||| ||||||||||||| | |||||||| |||||||| ||||    
T  10358002 tatagtccagatacatcaattattttatgaatctgaaaaaagaaaagttgcttataaatatgac 10357939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 202 - 246
Target Start/End: Complemental strand, 26090270 - 26090226
Alignment:
Q  202 ttatttaatgaatctgaaaagacaaaagttgtttataaatgtgac 246  Q
    ||||||||||||||| ||||  |||||||||||||||||||||||    
T  26090270 ttatttaatgaatctaaaaatgcaaaagttgtttataaatgtgac 26090226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 202 - 258
Target Start/End: Complemental strand, 34111153 - 34111097
Alignment:
Q  202 ttatttaatgaatctgaaaagacaaaagttgtttataaatgtgactagagggagtat 258  Q
    ||||||||||||| |||||| | ||||||||||||||||| |||  |||||||||||    
T  34111153 ttatttaatgaatatgaaaaaataaaagttgtttataaatatgatcagagggagtat 34111097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 180 - 246
Target Start/End: Original strand, 12018487 - 12018553
Alignment:
Q  180 tattataatccagatacatcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtgac 246  Q
    ||||||| | ||||||||||| ||||||||||||||| ||||  ||||||||| || ||||| ||||    
T  12018487 tattatatttcagatacatcaattatttaatgaatctaaaaatgcaaaagttgcttgtaaatatgac 12018553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 257
Target Start/End: Original strand, 37913216 - 37913277
Alignment:
Q  196 catcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtgactagagggagta 257  Q
    ||||||||||||||||||| | |||||  || ||||  ||||||||||||| ||||||||||    
T  37913216 catcagttatttaatgaatttaaaaagggaatagtttcttataaatgtgaccagagggagta 37913277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 200 - 260
Target Start/End: Original strand, 51267161 - 51267221
Alignment:
Q  200 agttatttaatgaatctgaaaagacaaaagttgtttataaatgtgactagagggagtataa 260  Q
    ||||| |||||||||||||||| |||||||||| ||||||||||||| |||||||||||||    
T  51267161 agttaattaatgaatctgaaaaaacaaaagttgcttataaatgtgaccagagggagtataa 51267221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 180 - 260
Target Start/End: Complemental strand, 13412734 - 13412653
Alignment:
Q  180 tattataatccagatacatcagttatttaatgaatctgaaaagacaaaagtt-gtttataaatgtgactagagggagtataa 260  Q
    ||||||||| ||||| ||||||||||||||||||||||||||  |||| ||| | |||||||||||||  ||||||||||||    
T  13412734 tattataattcagatgcatcagttatttaatgaatctgaaaaagcaaatgttagcttataaatgtgaccggagggagtataa 13412653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 189 - 257
Target Start/End: Original strand, 13412739 - 13412807
Alignment:
Q  189 ccagatacatcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtgactagagggagta 257  Q
    |||||||||||||||||||||||||  ||||||  ||||||||| |||||||||||||  |||||||||    
T  13412739 ccagatacatcagttatttaatgaacatgaaaaagcaaaagttgcttataaatgtgaccggagggagta 13412807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 191 - 259
Target Start/End: Complemental strand, 51267135 - 51267067
Alignment:
Q  191 agatacatcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtgactagagggagtata 259  Q
    |||||||||||||||||||||||||| |||||   ||||||| |||||||||||||  |||||||||||    
T  51267135 agatacatcagttatttaatgaatctaaaaagttgaaagttgcttataaatgtgaccggagggagtata 51267067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 44550189 - 44550132
Alignment:
Q  188 tccagatacatcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtga 245  Q
    ||||||||||||||||||||||||||| | |||||  |||||||||||| ||||||||    
T  44550189 tccagatacatcagttatttaatgaatttaaaaaggtaaaagttgtttaaaaatgtga 44550132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 191 - 246
Target Start/End: Complemental strand, 24970861 - 24970806
Alignment:
Q  191 agatacatcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtgac 246  Q
    |||||| ||| ||||||||||||||||||||   ||||||||||||||||||||||    
T  24970861 agatacgtcacttatttaatgaatctgaaaaagtaaaagttgtttataaatgtgac 24970806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 189 - 259
Target Start/End: Complemental strand, 23292428 - 23292358
Alignment:
Q  189 ccagatacatcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtgactagagggagtata 259  Q
    ||||||||||||| |||| ||||||||||||||   || | ||| ||||||||||||| ||||||||||||    
T  23292428 ccagatacatcagatattcaatgaatctgaaaaaggaatatttgcttataaatgtgaccagagggagtata 23292358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 53359878 - 53359927
Alignment:
Q  183 tataatccagatacatcagttatttaatgaatctgaaaagacaaaagttg 232  Q
    |||| ||||||||||||| || ||||||||||||||||| ||||||||||    
T  53359878 tatagtccagatacatcatttctttaatgaatctgaaaaaacaaaagttg 53359927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 239
Target Start/End: Complemental strand, 46462453 - 46462393
Alignment:
Q  179 ttattataatccagatacatcagttatttaatgaatctgaaaagacaaaagttgtttataa 239  Q
    ||||||||| ||| |||||||| ||||||||||||||| |||||  |||||||| ||||||    
T  46462453 ttattataaaccatatacatcatttatttaatgaatctaaaaagtgaaaagttgcttataa 46462393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 246
Target Start/End: Complemental strand, 53359865 - 53359813
Alignment:
Q  194 tacatcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtgac 246  Q
    ||||||| ||||||||||||||||||||  |||| |||| |||||||||||||    
T  53359865 tacatcaattatttaatgaatctgaaaacgcaaatgttgcttataaatgtgac 53359813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 191 - 259
Target Start/End: Original strand, 54569671 - 54569739
Alignment:
Q  191 agatacatcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtgactagagggagtata 259  Q
    |||||||||| |||||| |||||||||||||   |||||||| |||||||| | || ||||||||||||    
T  54569671 agatacatcacttatttcatgaatctgaaaaagtaaaagttgcttataaatataaccagagggagtata 54569739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 257
Target Start/End: Complemental strand, 5536813 - 5536738
Alignment:
Q  183 tataatccagatacatcagttattt-aatgaatctgaaaagacaaaagttgtttataaatgtgactagagggagta 257  Q
    |||| ||| |||||||||||| ||| ||||||| ||||||  ||||||||| ||||||||||||| || |||||||    
T  5536813 tatagtcctgatacatcagttgttttaatgaatatgaaaaagcaaaagttgcttataaatgtgaccagggggagta 5536738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 5536812 - 5536874
Alignment:
Q  180 tattataatccagatacatcagttatttaatgaatctgaaaaga-caaaagttgtttataaat 241  Q
    |||||| ||| ||||||| |||||||||||||||| |||||| |  |||||||||||||||||    
T  5536812 tattatgatcaagatacaccagttatttaatgaatgtgaaaaaagaaaaagttgtttataaat 5536874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 191 - 257
Target Start/End: Complemental strand, 54569653 - 54569587
Alignment:
Q  191 agatacatcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtgactagagggagta 257  Q
    |||||||| | |||||||||||| ||| |||  ||||||||| |||||||||||||  |||||||||    
T  54569653 agatacattaattatttaatgaacctgcaaaagcaaaagttgcttataaatgtgaccggagggagta 54569587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 246
Target Start/End: Complemental strand, 22220161 - 22220108
Alignment:
Q  193 atacatcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtgac 246  Q
    |||||||| |||  |||||||| |||||| ||||||||| ||||||||||||||    
T  22220161 atacatcacttacataatgaatttgaaaaaacaaaagttatttataaatgtgac 22220108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 222
Target Start/End: Original strand, 26066450 - 26066483
Alignment:
Q  189 ccagatacatcagttatttaatgaatctgaaaag 222  Q
    |||||||||||||||||||||||||||| |||||    
T  26066450 ccagatacatcagttatttaatgaatctaaaaag 26066483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 30206540 - 30206581
Alignment:
Q  180 tattataatccagatacatcagttatttaatgaatctgaaaa 221  Q
    |||||||| |||||||||||| ||||| ||||||||||||||    
T  30206540 tattataaaccagatacatcaattattcaatgaatctgaaaa 30206581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 180 - 260
Target Start/End: Original strand, 6167948 - 6168028
Alignment:
Q  180 tattataatccagatacatcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtgactagagggagtataa 260  Q
    ||||||| || ||||||||| |||||||||||||| |   ||  ||||||||||||||||||||||| |||||||||||||    
T  6167948 tattatattctagatacatcggttatttaatgaatatattaaagcaaaagttgtttataaatgtgaccagagggagtataa 6168028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 191 - 246
Target Start/End: Original strand, 7212355 - 7212410
Alignment:
Q  191 agatacatcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtgac 246  Q
    |||||||||| ||||||||||||||| |||| | ||||||||||||||||||||||    
T  7212355 agatacatcaattatttaatgaatctaaaaaaataaaagttgtttataaatgtgac 7212410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 191 - 258
Target Start/End: Complemental strand, 26636873 - 26636807
Alignment:
Q  191 agatacatcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtgactagagggagtat 258  Q
    |||||||||| ||||||||||||||||||||   |||||||| ||||||||||||| |||||||||||    
T  26636873 agatacatcatttatttaatgaatctgaaaaagtaaaagttgcttataaatgtgac-agagggagtat 26636807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 191 - 246
Target Start/End: Original strand, 26636891 - 26636946
Alignment:
Q  191 agatacatcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtgac 246  Q
    |||||||||| ||||||||| ||||||| || |||||||||| |||||||||||||    
T  26636891 agatacatcacttatttaataaatctgacaaaacaaaagttgcttataaatgtgac 26636946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 731519 - 731575
Alignment:
Q  191 agatacatcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtgact 247  Q
    ||||||||| ||| |||||||||| ||||||   |||||||||||||||||||||||    
T  731519 agatacatcggttgtttaatgaatttgaaaaagtaaaagttgtttataaatgtgact 731575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 246
Target Start/End: Original strand, 34255246 - 34255301
Alignment:
Q  191 agatacatcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtgac 246  Q
    |||||||||| ||||||||||||||| ||||   |||||||| |||||||||||||    
T  34255246 agatacatcacttatttaatgaatctaaaaaagtaaaagttgcttataaatgtgac 34255301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 7212345 - 7212307
Alignment:
Q  183 tataatccagatacatcagttatttaatgaatctgaaaa 221  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  7212345 tataatctagatacatcacttatttaatgaatctgaaaa 7212307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 192 - 258
Target Start/End: Complemental strand, 10184102 - 10184036
Alignment:
Q  192 gatacatcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtgactagagggagtat 258  Q
    |||||||||||||||||||||||||| |||  ||||||||| |||||||| ||||  ||||||||||    
T  10184102 gatacatcagttatttaatgaatctggaaaagcaaaagttgcttataaatatgaccggagggagtat 10184036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 188 - 246
Target Start/End: Original strand, 25878396 - 25878454
Alignment:
Q  188 tccagatacatcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtgac 246  Q
    ||||||||||||| |||||||||| |||||| || |||||| |||||||||||||||||    
T  25878396 tccagatacatcatttatttaatggatctgacaaaacaaaaattgtttataaatgtgac 25878454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 248
Target Start/End: Complemental strand, 22540901 - 22540841
Alignment:
Q  188 tccagatacatcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtgacta 248  Q
    ||||||||||| | |||||||||||||||||||| | |||||||| || ||||||||||||    
T  22540901 tccagatacataatttatttaatgaatctgaaaaaataaaagttgcttctaaatgtgacta 22540841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 257
Target Start/End: Complemental strand, 34877736 - 34877667
Alignment:
Q  188 tccagatacatcagttatttaatgaatctgaaaaga-caaaagttgtttataaatgtgactagagggagta 257  Q
    ||||||||||| | || ||||||||| || |||||| ||||||||| ||||||||||||||||||||||||    
T  34877736 tccagatacattaattgtttaatgaacct-aaaagagcaaaagttgcttataaatgtgactagagggagta 34877667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 246
Target Start/End: Complemental strand, 42291588 - 42291522
Alignment:
Q  180 tattataatccagatacatcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtgac 246  Q
    |||||||||||||||||| || || |||||| ||| ||||||   ||||||||||||||||||||||    
T  42291588 tattataatccagatacaccaattgtttaataaatttgaaaaagaaaaagttgtttataaatgtgac 42291522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 259
Target Start/End: Original strand, 22779197 - 22779261
Alignment:
Q  195 acatcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtgactagagggagtata 259  Q
    |||||||||||||||||||||||||||   |||| ||| |||||||||||||  || ||||||||    
T  22779197 acatcagttatttaatgaatctgaaaaaggaaaatttgcttataaatgtgaccggatggagtata 22779261  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 257
Target Start/End: Original strand, 29235903 - 29235958
Alignment:
Q  202 ttatttaatgaatctgaaaagacaaaagttgtttataaatgtgactagagggagta 257  Q
    ||||||||||||||| ||||  ||||||||| |||||||||||||  |||||||||    
T  29235903 ttatttaatgaatctcaaaaagcaaaagttgcttataaatgtgaccggagggagta 29235958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 191 - 257
Target Start/End: Complemental strand, 6622622 - 6622556
Alignment:
Q  191 agatacatcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtgactagagggagta 257  Q
    |||||||||| ||||||| | ||||| ||||   ||||||||||||||||||||| | |||||||||    
T  6622622 agatacatcaattatttattaaatctaaaaaagtaaaagttgtttataaatgtgattggagggagta 6622556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 189 - 227
Target Start/End: Original strand, 7430125 - 7430163
Alignment:
Q  189 ccagatacatcagttatttaatgaatctgaaaagacaaa 227  Q
    ||||||||||||||||||||||||||| ||||| |||||    
T  7430125 ccagatacatcagttatttaatgaatcagaaaaaacaaa 7430163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 253
Target Start/End: Original strand, 30225017 - 30225077
Alignment:
Q  193 atacatcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtgactagaggg 253  Q
    |||||||||||||||||||||||| ||||    | ||||| |||||||||| |||||||||    
T  30225017 atacatcagttatttaatgaatctaaaaaatttatagttgcttataaatgttactagaggg 30225077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 205 - 245
Target Start/End: Original strand, 46816468 - 46816508
Alignment:
Q  205 tttaatgaatctgaaaagacaaaagttgtttataaatgtga 245  Q
    |||||||||||||||||   |||||||||||||||||||||    
T  46816468 tttaatgaatctgaaaaagtaaaagttgtttataaatgtga 46816508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 191 - 259
Target Start/End: Original strand, 15577642 - 15577710
Alignment:
Q  191 agatacatcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtgactagagggagtata 259  Q
    |||||||||||||||||||||||| | ||||   |||||||||||||||||||||| | || |||||||    
T  15577642 agatacatcagttatttaatgaatttaaaaaagtaaaagttgtttataaatgtgaccaaagagagtata 15577710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 35242021 - 35242075
Alignment:
Q  192 gatacatcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtgac 246  Q
    |||||||  |||||||||||||||| |||||| || |||||||||||||||||||    
T  35242021 gatacattggttatttaatgaatctaaaaagagaatagttgtttataaatgtgac 35242075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 193 - 246
Target Start/End: Complemental strand, 43679968 - 43679915
Alignment:
Q  193 atacatcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtgac 246  Q
    |||||||||||||| ||||||||| |||||  ||||||||||||||||| ||||    
T  43679968 atacatcagttattcaatgaatctaaaaagtgaaaagttgtttataaatatgac 43679915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 24762497 - 24762457
Alignment:
Q  183 tataatccagatacatcagttatttaatgaatctgaaaaga 223  Q
    |||||| ||||||||||| ||||||||||||||||||||||    
T  24762497 tataattcagatacatcacttatttaatgaatctgaaaaga 24762457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 248
Target Start/End: Original strand, 41190900 - 41190951
Alignment:
Q  197 atcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtgacta 248  Q
    |||||||||||||| ||||| |||||| || ||||||||||| |||||||||    
T  41190900 atcagttatttaataaatctaaaaagaaaatagttgtttatatatgtgacta 41190951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 184 - 258
Target Start/End: Complemental strand, 44659135 - 44659061
Alignment:
Q  184 ataatccagatacatcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtgactagagggagtat 258  Q
    |||||||| |||||| | ||||||||||||| ||||||   ||||||| ||||||||||| ||| ||| ||||||    
T  44659135 ataatccaaatacataacttatttaatgaatttgaaaaataaaaagttatttataaatgtaacttgagagagtat 44659061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 43680730 - 43680786
Alignment:
Q  193 atacatcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtgactaga 250  Q
    |||||||||||| |||||||||||||||||  ||  ||||||||| ||||||||||||    
T  43680730 atacatcagttaattaatgaatctgaaaag-taactgttgtttatcaatgtgactaga 43680786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 189 - 221
Target Start/End: Complemental strand, 4860302 - 4860270
Alignment:
Q  189 ccagatacatcagttatttaatgaatctgaaaa 221  Q
    |||||||||||||||||| ||||||||||||||    
T  4860302 ccagatacatcagttattcaatgaatctgaaaa 4860270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 259
Target Start/End: Complemental strand, 8393752 - 8393684
Alignment:
Q  191 agatacatcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtgactagagggagtata 259  Q
    ||||||||| |||||||||||||| | ||||   ||||||||||||||||| |||| | || |||||||    
T  8393752 agatacatcggttatttaatgaatttaaaaaagtaaaagttgtttataaatatgaccaaagagagtata 8393684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 259
Target Start/End: Complemental strand, 36847299 - 36847231
Alignment:
Q  191 agatacatcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtgactagagggagtata 259  Q
    ||||||||| |||||||||||||| | ||||   ||||||||||||||||| |||| | || |||||||    
T  36847299 agatacatcggttatttaatgaatttaaaaaagtaaaagttgtttataaatatgaccaaagagagtata 36847231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 259
Target Start/End: Original strand, 44462188 - 44462256
Alignment:
Q  191 agatacatcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtgactagagggagtata 259  Q
    ||||||||| |||||||||||||| | ||||   ||||||||||||||||| |||| | || |||||||    
T  44462188 agatacatcggttatttaatgaatttaaaaaagtaaaagttgtttataaatatgaccaaagagagtata 44462256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 31987890 - 31987824
Alignment:
Q  180 tattataatccagatacatcagttatttaatgaatctgaa-aagacaaaagttgtttataaatgtga 245  Q
    ||||||||| ||  || ||||||||||||||||||||||| || |||||||||| ||||||||||||    
T  31987890 tattataattcaattatatcagttatttaatgaatctgaataaaacaaaagttgcttataaatgtga 31987824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 221
Target Start/End: Complemental strand, 24265544 - 24265506
Alignment:
Q  183 tataatccagatacatcagttatttaatgaatctgaaaa 221  Q
    |||| |||| |||||||||||||||||||||||||||||    
T  24265544 tatagtccatatacatcagttatttaatgaatctgaaaa 24265506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 180 - 246
Target Start/End: Original strand, 24265543 - 24265609
Alignment:
Q  180 tattataatccagatacatcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtgac 246  Q
    ||||||||| ||||||||||| ||||||||| ||||| ||||   |||||||| |||||||| ||||    
T  24265543 tattataattcagatacatcaattatttaataaatctaaaaaagaaaaagttgcttataaatctgac 24265609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 216
Target Start/End: Original strand, 32432291 - 32432324
Alignment:
Q  183 tataatccagatacatcagttatttaatgaatct 216  Q
    ||||||| ||||||||||||||||||||||||||    
T  32432291 tataatcaagatacatcagttatttaatgaatct 32432324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 29904284 - 29904336
Alignment:
Q  193 atacatcagttatttaatgaatctgaaaagacaaaagttgtttataaatgtga 245  Q
    |||||||| ||||||||||||| |||| ||  |||| ||||||||||||||||    
T  29904284 atacatcaattatttaatgaatttgaagaggaaaaaattgtttataaatgtga 29904336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 189 - 221
Target Start/End: Original strand, 32974260 - 32974292
Alignment:
Q  189 ccagatacatcagttatttaatgaatctgaaaa 221  Q
    ||||||| |||||||||||||||||||||||||    
T  32974260 ccagatatatcagttatttaatgaatctgaaaa 32974292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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