View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18809_high_16 (Length: 451)
Name: NF18809_high_16
Description: NF18809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18809_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 152 - 436
Target Start/End: Complemental strand, 40662655 - 40662371
Alignment:
| Q |
152 |
attagacactttaagatttttgttacattgctgtctcggtaaatcaaaaatttgcgatgttgtcattctcaaataagtctgtgatggnnnnnnnttgtac |
251 |
Q |
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| T |
40662655 |
attagacactttaaggtttttgttacattgctgtctcggtaaatcaaaaacctgtgatgttgtcattctcaaataagtctgtgatggaaaaaaattgtac |
40662556 |
T |
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| Q |
252 |
acacactaaggatcaaagataggaatacacagaagatgctctagaaagtaaatagtgaaagaatcatgatctgtggttcagtcccttttgcatgatcatg |
351 |
Q |
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| T |
40662555 |
acacactaaggatcaaagataggaatacacagaagatgctctagaaagtaaatagtgaaagaatcatgatttgtggttcagtcccttttgcatgatcatg |
40662456 |
T |
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| Q |
352 |
aaacaagtcttgtgaattgtgggtcgtcctgcaaatccaagtattccactttgaatataatgggaataaccgtttctctcctttg |
436 |
Q |
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| T |
40662455 |
aaacaagtcttgtgaattgtgggtcgtcctgcaaatccaagtattctactttgaatataatgggaataaccgtttctctcctttg |
40662371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 258 - 341
Target Start/End: Complemental strand, 40676114 - 40676029
Alignment:
| Q |
258 |
taaggatcaaagataggaatacacagaagatgctctagaaagtaaatagtgaaagaatcatgatctgtggtt--cagtcccttttg |
341 |
Q |
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| T |
40676114 |
taaggatcaaagatatgaatacacagaagatgctctagaaagtaaatagtgaaagaatcctgatttatggttcacagtcccttttg |
40676029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 352 - 436
Target Start/End: Complemental strand, 40675996 - 40675913
Alignment:
| Q |
352 |
aaacaagtcttgtgaattgtgggtcgtcctgcaaatccaagtattccactttgaatataatgggaataaccgtttctctcctttg |
436 |
Q |
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| T |
40675996 |
aaacaagttttgtgaattgtcgatcatcctgcaaatcagag-attctactttgaatataatgggaaaaaccacttctctcctttg |
40675913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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