View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18809_high_25 (Length: 390)
Name: NF18809_high_25
Description: NF18809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18809_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 13 - 371
Target Start/End: Complemental strand, 37496409 - 37496051
Alignment:
| Q |
13 |
aatatagtggaaattcagaatggaaaatgtgtgatatcttcaactatttttatgcattgaaacaaacttttatcttatttgttagaaaagaagaagcaaa |
112 |
Q |
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| T |
37496409 |
aatatagtggaaattcagaatggaaaatgtgtgatatcttcaacaatttttatgcattgaaacaaacttttatcttatttgttagaaaagaagaagcaaa |
37496310 |
T |
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| Q |
113 |
tggaaaacaaatcagaatttggtcactcaannnnnnnagcatcacttagatattaatgtcaacaagtatagctatggtggtagtctagagaaaagtgtat |
212 |
Q |
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| T |
37496309 |
tggaaaacaaatcagaatttggtcactcaatttttttagcatcacttagatattaatgtcaacaagtataggtatggtggtagtctagagaaaagtgtat |
37496210 |
T |
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| Q |
213 |
tcaattcaactctttttatagnnnnnnnaaagataatctgatatatgagatggtatttatcttaccctccatattttgttctgaaatgatatcgactgtt |
312 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37496209 |
tcaattcaactctttttatagtttttttaaagataatctgatatatgaaatggtatttatcttaccctccatattttgttctgaaatgatatcgactgtt |
37496110 |
T |
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| Q |
313 |
atgcaatttcaatgtgttcattactcgtctcacttataacaaacttcacatatattagc |
371 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37496109 |
atgcaatttcaatgtgttcattactcgtctcacttataacaaacttcacatatattagc |
37496051 |
T |
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