View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18809_high_35 (Length: 324)
Name: NF18809_high_35
Description: NF18809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18809_high_35 |
 | |
|
| [»] scaffold0640 (1 HSPs) |
| | |
|
| [»] scaffold2156 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0640 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 4867 - 5172
Alignment:
| Q |
1 |
ctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacacgtt |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4867 |
ctttgtattctagaacttgagtttttgagttacttggatttgagctacaatgattttgacgttataagagttccaatcactcaacacaacatcacacgtt |
4966 |
T |
|
| Q |
101 |
tatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttcatccttgaaata |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4967 |
catctaaacttgtctaccttgacttagcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttcatccttgaaata |
5066 |
T |
|
| Q |
201 |
tctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaagtacccttccttcactattagaattacaactgagttactgtaaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5067 |
tctcatccttagtgggattgatcttcgtaaggaaaccaactggcttcaagcagtaagtacccttccttcactattagaattacaactgagttactgtaaa |
5166 |
T |
|
| Q |
301 |
ctaaac |
306 |
Q |
| |
|
|||||| |
|
|
| T |
5167 |
ctaaac |
5172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2156 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: scaffold2156
Description:
Target: scaffold2156; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 463 - 159
Alignment:
| Q |
1 |
ctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacacgtt |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
463 |
ctttgtattctagaacttgagtttttgagttacttggatttgagctacaatgattttgacgttataagagttccaatcactcaacacaacatcacacgtt |
364 |
T |
|
| Q |
101 |
tatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttcatccttgaaata |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
363 |
catctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttcatcctt-aaata |
265 |
T |
|
| Q |
201 |
tctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaagtacccttccttcactattagaattacaactgagttactgtaaa |
300 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
264 |
tctcatccttattgggattgatcttcgtaaggaaaccaactggcttcaagcagtaagtacctttccttcactattagaattacaactgagttactgtaaa |
165 |
T |
|
| Q |
301 |
ctaaac |
306 |
Q |
| |
|
|||||| |
|
|
| T |
164 |
ctaaac |
159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 29)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 17941211 - 17941493
Alignment:
| Q |
1 |
ctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacacgtt |
100 |
Q |
| |
|
||||||||||| ||||||||| || | ||||| ||||||||||| | ||| | ||||| || |||||| ||||| || ||||||||||||||||| || |
|
|
| T |
17941211 |
ctttgtattcttgaacttgagtttctcagttatttggatttgagtgataataaatttgatgtgataagaattccatccattcaacacaacatcacacatt |
17941310 |
T |
|
| Q |
101 |
tatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttcatccttgaaata |
200 |
Q |
| |
|
|||||||||||| ||||| |||||||| || ||| ||||||||| ||||||||||||||||||||||||||||||||| || |||| |||||||||| |
|
|
| T |
17941311 |
cctctaaacttgtccaccttaacttatcctccttcaattttgataatactcttcacatggataatcttcattggctttctccattttctaccttgaaata |
17941410 |
T |
|
| Q |
201 |
tctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaagtacccttccttcactattagaattac |
283 |
Q |
| |
|
|||| ||||||||| |||||||||| | ||||||| ||||||||||||||||| | ||| ||||||||||||||||| |||| |
|
|
| T |
17941411 |
tctccgccttagtggcattgatcttcatgaggaaactaattggcttcaagcagtgaatacacttccttcactattagagttac |
17941493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 10 - 283
Target Start/End: Complemental strand, 24493942 - 24493672
Alignment:
| Q |
10 |
ctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacacgtttatctaaac |
109 |
Q |
| |
|
|||||||||||| || | ||||||||||| |||||| | || |||||||| | ||||| ||||| || |||| |||||||||||| || |||||||| |
|
|
| T |
24493942 |
ctagaacttgagtttcttagttacttggacttgagcgataacgattttgatttgataagtattccaaccattcaaaacaacatcacacattcatctaaac |
24493843 |
T |
|
| Q |
110 |
ttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttcatccttgaaatatctcatcct |
209 |
Q |
| |
|
||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||| || ||||||| || ||||||||||||| ||| |
|
|
| T |
24493842 |
ttgtctaccttgacttatcccccctcagctttggta---ctcttcacatggataatcttcattggcttcctccactttcttcgttgaaatatctcaacct |
24493746 |
T |
|
| Q |
210 |
tagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaagtacccttccttcactattagaattac |
283 |
Q |
| |
|
|||||| || ||||||||| ||||||||||||||||||||| ||| ||| |||||||||||||||||||||| |
|
|
| T |
24493745 |
tagtggaatcgatcttcgtgaggaaaccaattggcttcaagaagtggctacacttccttcactattagaattac |
24493672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 18115432 - 18115721
Alignment:
| Q |
1 |
ctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacacgtt |
100 |
Q |
| |
|
||||||||||||||||||||| || | ||||||||||||||||||| ||||||||||| || |||||| ||||| || |||||||||| |||||| || |
|
|
| T |
18115432 |
ctttgtattctagaacttgagtttctcagttacttggatttgagctcaaatgattttgatgtgataagatttccatccattcaacacaacctcacacatt |
18115531 |
T |
|
| Q |
101 |
tatctaaacttgtctaccttgacttatcccccctcatttttgataaaa------ctcttcacatggataatcttcattggctttcttcactttcatcctt |
194 |
Q |
| |
|
|||||| ||| || ||||||||||||||||| || || | || | |||||||||||||||||||| |||||||||| ||| ||| ||||| |
|
|
| T |
18115532 |
catctaaccttttccaccttgacttatcccccttccgttatcatgatcacggtcctcttcacatggataatcttggttggctttctccacattcttcctt |
18115631 |
T |
|
| Q |
195 |
gaaatatctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaagtacccttccttcactattagaattaca |
284 |
Q |
| |
|
|||||||||| ||||||||| ||| |||||| |||||||||||||||||||||| ||| | ||| ||||||||||||||||||||||| |
|
|
| T |
18115632 |
gaaatatctcgaccttagtggaattcatcttcataaggaaaccaattggcttcaaatagtgaatacacttccttcactattagaattaca |
18115721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 18143715 - 18143989
Alignment:
| Q |
1 |
ctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacacgtt |
100 |
Q |
| |
|
||||||||||||||||||||| || | ||||||||||||||||| | |||||||||||| | |||||| ||||| || ||||||||||||||||| || |
|
|
| T |
18143715 |
ctttgtattctagaacttgagtttcttagttacttggatttgagattcaatgattttgatatgataagaattccatccattcaacacaacatcacacatt |
18143814 |
T |
|
| Q |
101 |
tatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttcatccttgaaata |
200 |
Q |
| |
|
||||||||||||||||||||||||||| | | || || ||| | |||||||||||| ||||||||||| ||||||| ||||| ||||| |
|
|
| T |
18143815 |
cctctaaacttgtctaccttgacttatcctacagctttgtt------actggt---atggataatcttgattggctttctccactttcttccttaaaata |
18143905 |
T |
|
| Q |
201 |
tctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaagtacccttccttcactattagaattaca |
284 |
Q |
| |
|
||||| ||| ||||| |||||||||| |||||||||||||||||||||| ||| | ||| ||||||||||||||||||||||| |
|
|
| T |
18143906 |
tctcaacctcagtggaattgatcttcataaggaaaccaattggcttcaaatagtgaatacacttccttcactattagaattaca |
18143989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 19460999 - 19461288
Alignment:
| Q |
1 |
ctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacacgtt |
100 |
Q |
| |
|
||||||||||||||||||||| || | ||||||||||||||||| ||||| ||||| || |||||| ||||| || ||||||||||||||||| || |
|
|
| T |
19460999 |
ctttgtattctagaacttgagtttctcagttacttggatttgagtctgaatgaatttgatgtgataagatttccatccattcaacacaacatcacacatt |
19461098 |
T |
|
| Q |
101 |
tatctaaacttgtctaccttgacttatcccccctcatttttgataaaa------ctcttcacatggataatcttcattggctttcttcactttcatcctt |
194 |
Q |
| |
|
|||||| ||| |||||||||||||||||||| || || | || | |||||||||||||||||||| |||||||||| ||| ||| ||||| |
|
|
| T |
19461099 |
catctaaccttttctaccttgacttatcccccttccgttatcatgatcacggtcctcttcacatggataatcttggttggctttctccacattcttcctt |
19461198 |
T |
|
| Q |
195 |
gaaatatctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaagtacccttccttcactattagaattaca |
284 |
Q |
| |
|
|||||||||| ||||||||| ||| |||||| |||||||||||||||||||||| ||| | ||| ||||||||||||||||||||||| |
|
|
| T |
19461199 |
gaaatatctcgaccttagtggaattcatcttcataaggaaaccaattggcttcaaatagtgaatacacttccttcactattagaattaca |
19461288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 18102909 - 18103201
Alignment:
| Q |
1 |
ctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacacgtt |
100 |
Q |
| |
|
||||||||||| | ||||||| || | | ||||||||||||||||| ||| ||||||| || |||||| ||||| || ||||||||||||||||| || |
|
|
| T |
18102909 |
ctttgtattcttggacttgagtttctcaattacttggatttgagctggaatcattttgatgtgataagaattccatccattcaacacaacatcacacatt |
18103008 |
T |
|
| Q |
101 |
tatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttcatccttgaaata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| | | | | | ||| |||||||||| |||||| ||||||||| ||||||| ||||| ||||| |
|
|
| T |
18103009 |
catctaaacttgtctaccttgacttatcctacaactatcct------attctgcacatggatagtcttcactggctttctccactttcttccttaaaata |
18103102 |
T |
|
| Q |
201 |
tctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaagtacccttccttcactattagaattacaactgagttactgtaa |
299 |
Q |
| |
|
||||| ||||||| |||||||||||| |||||||||||| ||| |||||| ||||||||| ||||||||| | ||||||||||| ||||||| ||||| |
|
|
| T |
18103103 |
tctcaaccttagttggattgatcttcataaggaaaccaactggtttcaagtagtaagtacacttccttcattgttagaattacagttgagttattgtaa |
18103201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 2 - 282
Target Start/End: Original strand, 18015574 - 18015848
Alignment:
| Q |
2 |
tttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacacgttt |
101 |
Q |
| |
|
|||||||| |||||||||| || | ||||||||||||||||| | |||||| ||||| || ||||| ||||| || |||| |||||||||||| || |
|
|
| T |
18015574 |
tttgtattttagaacttgaatttcttagttacttggatttgagtttcaatgaatttgatgtgataagtattccatccattcaaaacaacatcacacattc |
18015673 |
T |
|
| Q |
102 |
atctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttcatccttgaaatat |
201 |
Q |
| |
|
||||| ||| |||||||||||||| ||||| || |||| |||||||||||||||||||| |||||||||| ||| ||| || ||||||||| |
|
|
| T |
18015674 |
ctctaaccttttctaccttgacttacacccccccactttt------actcttcacatggataatctggattggctttcaccacattcgtcgttgaaatat |
18015767 |
T |
|
| Q |
202 |
ctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaagtacccttccttcactattagaatta |
282 |
Q |
| |
|
|||| ||||||| |||||||||||| |||||||||||||||||||||| ||| | | | ||||||||||||||||||||| |
|
|
| T |
18015768 |
ctcaaccttagttggattgatcttcataaggaaaccaattggcttcaaatagtgaattcacttccttcactattagaatta |
18015848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 19392604 - 19392897
Alignment:
| Q |
1 |
ctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacacgtt |
100 |
Q |
| |
|
|||||||||||| |||||||| || | |||||||||||||||||| |||||||||||||| |||||| |||||| || ||||| ||||||||| | || |
|
|
| T |
19392604 |
ctttgtattctacaacttgagtttctaagttacttggatttgagcgggaatgattttgacgtgataagaattccagccattcaacgcaacatcacgcatt |
19392703 |
T |
|
| Q |
101 |
tatctaaacttgtctaccttgacttatccccc--ctcat----tt---ttgataaaactcttcacatggataatcttcattggctttcttcactttcatc |
191 |
Q |
| |
|
||||||||||| |||||||||||||||| | |||| || | | ||| | |||| ||||||| |||| ||||||||||| ||||||| || |
|
|
| T |
19392704 |
catctaaacttgcctaccttgacttatcctacagctcagccggttccgtggttaatggttttcaaatggatagtcttgattggctttctccactttcttc |
19392803 |
T |
|
| Q |
192 |
cttgaaatatctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaagtacccttccttcactattagaattacaa |
285 |
Q |
| |
|
|||||||||||| |||| ||||| |||||||||| ||||||||||||||||||||||||||| |||| ||| ||||||| |||||||||||| |
|
|
| T |
19392804 |
attgaaatatctcttcctaagtggaattgatcttcataaggaaaccaattggcttcaagcagtgagtatactttcttcactgttagaattacaa |
19392897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 14896923 - 14896642
Alignment:
| Q |
1 |
ctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacacgtt |
100 |
Q |
| |
|
||||||||||| ||||| ||| || | |||||||| |||||||| ||| ||||||| || ||||| ||||||||||||||||||||||||||| || |
|
|
| T |
14896923 |
ctttgtattctcgaactggagtttctcagttacttagatttgagtatgaatcattttgatgtgataagtattccagtcactcaacacaacatcacacatt |
14896824 |
T |
|
| Q |
101 |
tatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttcatccttgaaata |
200 |
Q |
| |
|
||||| ||| ||||||||||||||||| | | | ||| ||| ||||||||||||||| ||||||||||| ||| ||| ||||||||||| |
|
|
| T |
14896823 |
catctagccttttctaccttgacttatccttcaacgaaggtcctaa---tctgcacatggataatcttgattggctttctccacattcttccttgaaata |
14896727 |
T |
|
| Q |
201 |
tctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaagtacccttccttcactattagaattacaa |
285 |
Q |
| |
|
||||||||||||||| |||||||||| |||||| ||||||||||||||| ||| ||||| ||||| |||||||||||| ||||| |
|
|
| T |
14896726 |
tctcatccttagtggaattgatcttcacaaggaatccaattggcttcaagtagtgagtacacttccctcactattagaactacaa |
14896642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 18164629 - 18164903
Alignment:
| Q |
1 |
ctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacacgtt |
100 |
Q |
| |
|
||||||||||||||||||||| || | ||| ||||||||||||| ||||||||||| || |||||| || || | |||||||||| |||||| || |
|
|
| T |
18164629 |
ctttgtattctagaacttgagtttctcagtcacttggatttgagtcttaatgattttgatgtgataagaattacatcaattcaacacaacttcacacatt |
18164728 |
T |
|
| Q |
101 |
tatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttcatccttgaaata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| | | | || ||| | |||||||||||| ||||||||||| ||||||| ||||||||||| |
|
|
| T |
18164729 |
catctaaacttgtctaccttgacttatccaacagcttaatt------actagt---atggataatcttgattggctttctccactttcttccttgaaata |
18164819 |
T |
|
| Q |
201 |
tctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaagtacccttccttcactattagaattaca |
284 |
Q |
| |
|
||||| ||||||| |||||||||| |||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
18164820 |
tctcaaccttagttttattgatcttcataaggaaaccaattggattcaagcagtgagtacacttccttcactattagaattaca |
18164903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 8 - 275
Target Start/End: Original strand, 25462524 - 25462788
Alignment:
| Q |
8 |
ttctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacacgtttatctaa |
107 |
Q |
| |
|
|||||||||||||| || | |||||||||||||| || | ||||| ||| || | ||||| |||||| | ||||||||||||||||| || |||||| |
|
|
| T |
25462524 |
ttctagaacttgagtttctcagttacttggatttaagtgataatgaatttaacatcataagtattccagcctttcaacacaacatcacacattcatctaa |
25462623 |
T |
|
| Q |
108 |
acttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttcatccttgaaatatctcatc |
207 |
Q |
| |
|
||||| ||| |||||||||||||| |||| || || ||||||||||||||||||||||||||||||||| || | || ||||| |||||||||| | |
|
|
| T |
25462624 |
acttgactatcttgacttatccccgctcaccctt---aacactcttcacatggataatcttcattggctttctccattatcttccttaaaatatctcaac |
25462720 |
T |
|
| Q |
208 |
cttagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaagtacccttccttcactatt |
275 |
Q |
| |
|
|| | || |||||||||| ||||||||| ||||||||||||||||| ||| ||| |||||||||| |
|
|
| T |
25462721 |
ctcaatgcaattgatcttcataaggaaactaattggcttcaagcagtgtctactctttcttcactatt |
25462788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 16676680 - 16676963
Alignment:
| Q |
1 |
ctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacacgtt |
100 |
Q |
| |
|
||||||||||||||||||||| || | | ||||||||||||||||| ||||| |||||| | |||||| ||||| || |||||| ||| |||||| | |
|
|
| T |
16676680 |
ctttgtattctagaacttgagtttctaatttacttggatttgagctggaatgaatttgacctaataagaattccatccattcaacaaaacctcacacatg |
16676779 |
T |
|
| Q |
101 |
tatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacat------ggataatcttcattggctttcttcactttcatcctt |
194 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||| |||||| ||||||| || |||||||||||||||||||| | |||||| ||||| |
|
|
| T |
16676780 |
catctaaccttgtctaccttgacttatcctccctcggccttgata---ctcttcatataagtatggataatcttcattggctttttatactttcttcctt |
16676876 |
T |
|
| Q |
195 |
gaaatatctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaagtacccttccttcactattagaatt |
281 |
Q |
| |
|
||| |||||| ||||||||| ||||||||| |||||||||||||||| |||| ||| | ||| |||||||||||||||||||| |
|
|
| T |
16676877 |
gaagtatctcgaccttagtggacttgatcttcataaggaaaccaattggattcagaaagtgaatacacttccttcactattagaatt |
16676963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 19333464 - 19333765
Alignment:
| Q |
1 |
ctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacacgtt |
100 |
Q |
| |
|
||||||||||||||||||||| || | ||||||||||||||||| |||| |||||||| |||| | ||||| || || |||||||||||||| || |
|
|
| T |
19333464 |
ctttgtattctagaacttgagtttctcagttacttggatttgagtctgaatgtatttgacgtgataataattccatccattccacacaacatcacacatt |
19333563 |
T |
|
| Q |
101 |
tatctaaacttgtctaccttgacttatcccccctca------tttttgat------------aaaactcttcacatggataatcttcattggctttcttc |
182 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||| || | ||| |||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
19333564 |
catctaaacttgtataccttgacttatccctcctcaacaaatttgtcgatttagaaaaaaagaaaactctgcacatggatagtcttcattggctttcttc |
19333663 |
T |
|
| Q |
183 |
actttcatccttgaaatatctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaagtacccttccttcactattagaatta |
282 |
Q |
| |
|
|||||| ||||| |||||||||| ||||||| |||||||||| |||||||||||||| | ||||| ||| | | | ||||||||||||||||||||| |
|
|
| T |
19333664 |
actttcttccttaaaatatctcaaccttagtaacattgatcttcctaaggaaaccaatttgtttcaaatagtgaattcacttccttcactattagaatta |
19333763 |
T |
|
| Q |
283 |
ca |
284 |
Q |
| |
|
|| |
|
|
| T |
19333764 |
ca |
19333765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 18146297 - 18146575
Alignment:
| Q |
1 |
ctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacacgtt |
100 |
Q |
| |
|
||||||||||| ||||||||| || | | ||||||||||||||| | ||| ||||||| | |||||| ||||| || ||||||||| ||||||| | |
|
|
| T |
18146297 |
ctttgtattcttgaacttgagtttcttaattacttggatttgagtgataattattttgatatgataagaattccatccattcaacacaatatcacacata |
18146396 |
T |
|
| Q |
101 |
tatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttcatccttgaaata |
200 |
Q |
| |
|
||||||| ||| | ||||||||||||||| | | | | | ||||| |||||| |||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
18146397 |
tatctaaccttttgtaccttgacttatcct---ttaactacggtcctactctgcacatgcataatcttcattggctttctccactttcttccttgaaata |
18146493 |
T |
|
| Q |
201 |
tctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaagtacccttccttcactattagaatta |
282 |
Q |
| |
|
|||| |||||||| ||||||||||| ||||||||||| ||| |||||| ||||| | | ||||||||||||||| ||||| |
|
|
| T |
18146494 |
tctctcccttagtgagattgatcttcacaaggaaaccaactggtttcaagtagtaaattcacttccttcactattaaaatta |
18146575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 17728213 - 17727933
Alignment:
| Q |
1 |
ctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacacgtt |
100 |
Q |
| |
|
||||||||||| ||||||||| || | ||||||||||||||||||| |||| | ||||| | |||||| ||||| || ||| |||||||||||||||| |
|
|
| T |
17728213 |
ctttgtattcttgaacttgagtttcttagttacttggatttgagcttcaataaatttgatgccataagaattccatccattcatcacaacatcacacgtt |
17728114 |
T |
|
| Q |
101 |
tatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttcatccttgaaata |
200 |
Q |
| |
|
||| || ||| | ||| |||||||||| | | | | | |||||| |||||||||| |||||||||||||||| ||||||| ||||| |||| |
|
|
| T |
17728113 |
catcgaaccttttgtacactgacttatcct---taaatcaaggtccaactctgcacatggatagtcttcattggctttctccactttcttccttacaata |
17728017 |
T |
|
| Q |
201 |
tctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaagtacccttccttcactattagaattaca |
284 |
Q |
| |
|
||||| ||| | ||| |||||||||| ||||||||| ||||||||||||| | | | ||| ||||||||||| ||||||||||| |
|
|
| T |
17728016 |
tctcaacctcaatggaattgatcttcataaggaaacaaattggcttcaagtattgaatacacttccttcactgttagaattaca |
17727933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 19029442 - 19029162
Alignment:
| Q |
1 |
ctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacacgtt |
100 |
Q |
| |
|
||||||||||| ||||||||| || | ||||||||||||||||||| |||| | ||||| | |||||| ||||| || ||| |||||||||||||||| |
|
|
| T |
19029442 |
ctttgtattcttgaacttgagtttcttagttacttggatttgagcttcaataaatttgatgccataagaattccatccattcatcacaacatcacacgtt |
19029343 |
T |
|
| Q |
101 |
tatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttcatccttgaaata |
200 |
Q |
| |
|
||| || ||| | ||| |||||||||| | | | | | |||||| |||||||||| |||||||||||||||| ||||||| ||||| |||| |
|
|
| T |
19029342 |
catcgaaccttttgtacactgacttatcct---taaatcaaggtccaactctgcacatggatagtcttcattggctttctccactttcttccttacaata |
19029246 |
T |
|
| Q |
201 |
tctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaagtacccttccttcactattagaattaca |
284 |
Q |
| |
|
||||| ||| | ||| |||||||||| ||||||||| ||||||||||||| | | | ||| ||||||||||| ||||||||||| |
|
|
| T |
19029245 |
tctcaacctcaatggaattgatcttcataaggaaacaaattggcttcaagtattgaatacacttccttcactgttagaattaca |
19029162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 19413669 - 19413961
Alignment:
| Q |
1 |
ctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacacgtt |
100 |
Q |
| |
|
||||||||||||||||||||| || | |||||||||||||||||| ||||| |||||| | |||||| ||||| | | ||||||| ||||||| || |
|
|
| T |
19413669 |
ctttgtattctagaacttgagtttctcagttacttggatttgagccacaattattttggtgagataagaattccaactattaaacacaatatcacacatt |
19413768 |
T |
|
| Q |
101 |
tatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttcatccttgaaata |
200 |
Q |
| |
|
|||||||||||| ||||||||||||| || || || || | | ||| |||||||||||||||||| | ||||||| || |||||||| |
|
|
| T |
19413769 |
catctaaacttgtttaccttgacttat---cctacagcttagacacta----tca-----ataatcttcattggctttatccactttcttcgttgaaata |
19413856 |
T |
|
| Q |
201 |
tctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaagtacccttccttcactattagaattacaactgagttactgtaaa |
300 |
Q |
| |
|
||||| ||||||| |||||||||||| ||||||||||||||||| |||| ||| | ||| ||||||||||||||||||||||| ||||| | ||||| |
|
|
| T |
19413857 |
tctcacccttagttggattgatcttcataaggaaaccaattggcctcaaatagtgaatacacttccttcactattagaattacagatgagtcattgtaac |
19413956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 19436347 - 19436624
Alignment:
| Q |
1 |
ctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacacgtt |
100 |
Q |
| |
|
|||||||||||| |||||||| || | ||||||||||||||||| ||||||||||| || |||||| || || || ||||||||| ||||||| || |
|
|
| T |
19436347 |
ctttgtattctaaaacttgagtttcttagttacttggatttgagtgtgaatgattttgatgtgataagaatttcatccattcaacacaatatcacacatt |
19436446 |
T |
|
| Q |
101 |
tatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttcatccttgaaata |
200 |
Q |
| |
|
|||||||||| |||||||||||||||| | | | | | ||| |||||| |||||||| ||||||||||||| ||||| ||||| ||||| |
|
|
| T |
19436447 |
catctaaacttctctaccttgacttatcgtacaactatcct------attctgcacatgaataatcttgattggctttcttccctttcttccttaaaata |
19436540 |
T |
|
| Q |
201 |
tctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaagtacccttccttcactattagaattaca |
284 |
Q |
| |
|
||||| ||||| || |||||||||| |||||||||||| ||| |||||||||| | | | ||| ||||||||||||||||||| |
|
|
| T |
19436541 |
tctcaaccttactgaaattgatcttcataaggaaaccaactggtttcaagcagtgaattcactttcttcactattagaattaca |
19436624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 18022275 - 18022549
Alignment:
| Q |
1 |
ctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacacgtt |
100 |
Q |
| |
|
||||||||||| ||||||||| || | ||||| ||||||||||| | ||||| ||||| || |||||| ||||| | ||||||||||||||||| | |
|
|
| T |
18022275 |
ctttgtattcttgaacttgagtttcttagttatttggatttgagtcataatgaatttgatgtgataagaattccatctattcaacacaacatcacacact |
18022374 |
T |
|
| Q |
101 |
tatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttcatccttgaaata |
200 |
Q |
| |
|
||||||| || ||||||||||||||||| ||| || | ||||||||| ||||||||| | ||||||||||||||||| ||||||||||| |
|
|
| T |
18022375 |
catctaaatttttctaccttgacttatcc---------tttaatgatggtcttcacatagataatcttgactggctttcttcactttcttccttgaaata |
18022465 |
T |
|
| Q |
201 |
tctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaagtacccttccttcactattagaattaca |
284 |
Q |
| |
|
|||| ||| ||||| ||||||||| |||||||||||| ||| |||||| | | | | | ||||||||||||||| ||||||| |
|
|
| T |
18022466 |
tctcgacctcagtggacttgatcttcataaggaaaccaactggtttcaagtaatcaattcacttccttcactattacaattaca |
18022549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 4 - 284
Target Start/End: Original strand, 19399190 - 19399464
Alignment:
| Q |
4 |
tgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacacgtttat |
103 |
Q |
| |
|
|||||||||||||||||| || | ||||||||||||||||| | ||||| ||| | || |||||| ||||| || ||||||||| ||||||| || || |
|
|
| T |
19399190 |
tgtattctagaacttgagtttctcagttacttggatttgagtgagaatgaatttcatgtgataagaattccatccattcaacacaatatcacacattcat |
19399289 |
T |
|
| Q |
104 |
ctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttcatccttgaaatatct |
203 |
Q |
| |
|
|||||||||| || ||||||| ||| | || | ||||| || |||||||||||| ||||||||||| ||||||| ||||| |||||||| |
|
|
| T |
19399290 |
ctaaacttgtagactttgacttctcctggaact------atcagactctgcaaatggataatcttgattggctttctccactttcttccttaaaatatct |
19399383 |
T |
|
| Q |
204 |
catccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaagtacccttccttcactattagaattaca |
284 |
Q |
| |
|
|| ||||| | |||||||||||| |||||||||||| ||| |||||| ||||||||| ||||| ||| | || |||||||| |
|
|
| T |
19399384 |
caaccttaattggattgatcttcataaggaaaccaactggtttcaagtagtaagtacacttccgtcattgtttgaattaca |
19399464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 19375161 - 19375450
Alignment:
| Q |
1 |
ctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacacgtt |
100 |
Q |
| |
|
|||| |||||||||||||||| || | ||||||||||||||||| | |||||| |||||||| |||||| |||| || |||||||||| |||||| || |
|
|
| T |
19375161 |
ctttatattctagaacttgagtttctcagttacttggatttgagtttcaatgaatttgacgtgataagaattccgtccattcaacacaacttcacacatt |
19375260 |
T |
|
| Q |
101 |
tatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttcatccttgaaata |
200 |
Q |
| |
|
|||||| ||| | | ||||||||||| || ||| | | ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
19375261 |
catctaaccttttgttccttgacttat---ccttcaactacagtcctactctgcacatggataatcttcaatggctttcttcactttcttccttgaaata |
19375357 |
T |
|
| Q |
201 |
tctcatccttagtg--------gga-ttgatcttcgtaaggaaaccaattggcttcaagcagtaagtacccttccttcactattagaattaca |
284 |
Q |
| |
|
||||| ||| ||| ||| ||||||||| ||||| |||||||||| || ||| ||| | | | ||||||||||||||||||||||| |
|
|
| T |
19375358 |
tctcaacctcggtggagtctttggagttgatcttcataaggtaaccaattggtttgaagtagtgacttcacttccttcactattagaattaca |
19375450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 19380372 - 19380649
Alignment:
| Q |
1 |
ctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacacgtt |
100 |
Q |
| |
|
||||||||||| |||||| || || | ||||||||||||||||| | ||| ||||||| || |||||| ||||| || |||||| ||||| |||| || |
|
|
| T |
19380372 |
ctttgtattcttgaacttaagtttcttagttacttggatttgagtgaaaataattttgatgtgataagaattccatccattcaacaaaacattacacatt |
19380471 |
T |
|
| Q |
101 |
tatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttcatccttgaaata |
200 |
Q |
| |
|
||||| ||| | ||||||||||||||| | || || |||| ||||||||||||||| ||||||||||| ||||||| ||||| ||||| |
|
|
| T |
19380472 |
catctatccttttgcaccttgacttatcccac------ttatatggtcctctgcacatggataatcttgattggctttctccactttcttccttaaaata |
19380565 |
T |
|
| Q |
201 |
tctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaagtacccttccttcactattagaattaca |
284 |
Q |
| |
|
||||| ||| ||| ||| |||||| |||||||| |||||| |||||| ||| | ||| ||||||||||||||||||||||| |
|
|
| T |
19380566 |
tctcaacctcgatggaatttatcttcataaggaaaataattggtttcaagtagtgaatacacttccttcactattagaattaca |
19380649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 165 - 284
Target Start/End: Original strand, 18108067 - 18108186
Alignment:
| Q |
165 |
tcttcattggctttcttcactttcatccttgaaatatctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaagtaccctt |
264 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||| |||| |||| ||||||||| |||||||||||| ||| |||||| ||| | | | ||| |
|
|
| T |
18108067 |
tcttcattggctttcttcacattcttccttgaaatatctcagccttggtggagttgatcttcataaggaaaccaactggtttcaagtagtgaattcactt |
18108166 |
T |
|
| Q |
265 |
ccttcactattagaattaca |
284 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
18108167 |
tcttcactattagaattaca |
18108186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 152 - 285
Target Start/End: Original strand, 19424231 - 19424364
Alignment:
| Q |
152 |
ttcacatggataatcttcattggctttcttcactttcatccttgaaatatctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagc |
251 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| || ||| | |||| ||||||||| ||||||||| ||| |||| ||||||| |||||| |
|
|
| T |
19424231 |
ttcacatggataatcttgattggctttcttcactttcttcgttggagaatctttaccttagtggaattgatctttctaaagaaagcaattggattcaagg |
19424330 |
T |
|
| Q |
252 |
agtaagtacccttccttcactattagaattacaa |
285 |
Q |
| |
|
||| ||||| ||||||||||||||| |||||||| |
|
|
| T |
19424331 |
agtcagtacacttccttcactattacaattacaa |
19424364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 19350876 - 19351150
Alignment:
| Q |
1 |
ctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacacgtt |
100 |
Q |
| |
|
||||||||||||||||||||| || | |||||||||| |||||| | ||| ||||||| || |||| ||||| || |||| | |||||||||| || |
|
|
| T |
19350876 |
ctttgtattctagaacttgagtttctcagttacttgggtttgagtgagaatcattttgatgtgataactattccatccattcaaaaaaacatcacacatt |
19350975 |
T |
|
| Q |
101 |
tatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttcatccttgaaata |
200 |
Q |
| |
|
||||||||||||||||||||||||||| | | || | ||| | | ||| |||||||| ||||||||||| ||||||| ||| | ||||| |
|
|
| T |
19350976 |
cctctaaacttgtctaccttgacttatcctacagc---ttagttaa------tgatatgaataatcttgattggctttctccactttcttccataaaata |
19351066 |
T |
|
| Q |
201 |
tctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaagtacccttccttcactattagaattaca |
284 |
Q |
| |
|
||||| ||| |||| |||||||||| |||||||||||||||||||||| ||| | | | ||||||||||| ||| ||||||| |
|
|
| T |
19351067 |
tctcaacctcggtggaattgatcttcataaggaaaccaattggcttcaaatagtgaattcacttccttcactgttaaaattaca |
19351150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 148 - 282
Target Start/End: Original strand, 17949438 - 17949573
Alignment:
| Q |
148 |
actcttcacatggataatcttcattggctttcttcactttcatccttgaaatatctcatccttagtgggattgatcttc-gtaaggaaaccaattggctt |
246 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||||||| ||||| || ||||||| ||| |||| |||||||||| |||||||| |||||| || |
|
|
| T |
17949438 |
actctgcacatggataatcttcattggctttctccactttcttccttaaattatctcaacctcggtggaattgatcttcaataaggaaaataattggttt |
17949537 |
T |
|
| Q |
247 |
caagcagtaagtacccttccttcactattagaatta |
282 |
Q |
| |
|
|||| ||| | | | ||| ||||||||||||||||| |
|
|
| T |
17949538 |
caagtagtgaattcactttcttcactattagaatta |
17949573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 150 - 235
Target Start/End: Original strand, 19419599 - 19419684
Alignment:
| Q |
150 |
tcttcacatggataatcttcattggctttcttcactttcatccttgaaatatctcatccttagtgggattgatcttcgtaaggaaa |
235 |
Q |
| |
|
|||||||||| |||||||| ||||||||||| ||||||| ||||| |||||||||| ||| |||| |||||||||| |||||||| |
|
|
| T |
19419599 |
tcttcacatgtataatcttgattggctttctccactttcttccttaaaatatctcaacctcggtggaattgatcttcataaggaaa |
19419684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 19419462 - 19419590
Alignment:
| Q |
1 |
ctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacacgtt |
100 |
Q |
| |
|
||||||||| | ||||||||| || | ||||||||||||||||| | ||| | ||| | || |||||| ||||| || ||||||||||||||||| || |
|
|
| T |
19419462 |
ctttgtatttttgaacttgagtttcttagttacttggatttgagtcataataaatttaatgtgataagaattccatccattcaacacaacatcacacatt |
19419561 |
T |
|
| Q |
101 |
tatctaaacttgtctaccttgacttatcc |
129 |
Q |
| |
|
|||||| ||||| | |||||||||||| |
|
|
| T |
19419562 |
catctaaccttgtgaaacttgacttatcc |
19419590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 18107919 - 18108046
Alignment:
| Q |
1 |
ctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacacgtt |
100 |
Q |
| |
|
||||||||||| || |||||| || | ||||| || |||||||||| ||||||||||| || |||||| ||||| || ||||||||| ||||||| || |
|
|
| T |
18107919 |
ctttgtattcttgaccttgagtttctcagttatttagatttgagctggaatgattttgatgtcataagaattccatccattcaacacaatatcacacatt |
18108018 |
T |
|
| Q |
101 |
tatctaaacttgtctaccttgacttatc |
128 |
Q |
| |
|
|||||| ||| ||||||||||||| |
|
|
| T |
18108019 |
catctaacctttcgcaccttgacttatc |
18108046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 99; Significance: 7e-49; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 13667407 - 13667125
Alignment:
| Q |
1 |
ctttgtattctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacacgtt |
100 |
Q |
| |
|
|||||||||||||||||| || || | || || ||||||||||| | ||||| ||||| || |||| | || || || |||||||||||||||| || |
|
|
| T |
13667407 |
ctttgtattctagaacttaagtttctcagctatttggatttgagtcataatgaatttgatgtgataaaaatttcatccattcaacacaacatcacaaatt |
13667308 |
T |
|
| Q |
101 |
tatctaaacttgtctaccttgacttatcccccctcatttttgataaaactcttcacatggataatcttcattggctttcttcactttcatccttgaaata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| || || ||||||||| | ||||||||| ||||||||||||||| ||||| || |||| ||||||||||| |
|
|
| T |
13667307 |
catctaaacttgtctaccttgacttatccgcctacaattttgataatattcttcacattgataatcttcattggttttctccattttcttccttgaaata |
13667208 |
T |
|
| Q |
201 |
tctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaagtacccttccttcactattagaattac |
283 |
Q |
| |
|
|||| ||| ||| |||||||||| ||||||||| |||||||| |||| ||| | ||| |||||||||| ||||||||||| |
|
|
| T |
13667207 |
tctccggtttaatggcattgatcttcataaggaaactaattggctccaagtagtgaatacacttccttcacaattagaattac |
13667125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 164 - 278
Target Start/End: Original strand, 2509634 - 2509754
Alignment:
| Q |
164 |
atcttcattggctttcttcactttcatccttgaaatatctcatcctt------agtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaag |
257 |
Q |
| |
|
||||||||||||||||| ||||||| ||||| |||||||||| |||| ||| |||||||||| |||| ||||||||||| | |||| ||| || |
|
|
| T |
2509634 |
atcttcattggctttctccactttcttccttaaaatatctcaaccttggtttcagtaccattgatcttcataagaaaaccaattgggtacaagtagtgag |
2509733 |
T |
|
| Q |
258 |
tacccttccttcactattaga |
278 |
Q |
| |
|
||| ||||||||||||||||| |
|
|
| T |
2509734 |
tacacttccttcactattaga |
2509754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 150 - 278
Target Start/End: Original strand, 15531973 - 15532101
Alignment:
| Q |
150 |
tcttcacatggataatcttcattggctttcttcactttcatccttgaaatatctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaa |
249 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||| | |||||||||||| |||||||||||| ||| ||||| |
|
|
| T |
15531973 |
tcttcacatggataatcttgattggctttctccactttcatccttgaaatatctcaaccttaattggattgatcttcataaggaaaccaactggattcaa |
15532072 |
T |
|
| Q |
250 |
gcagtaagtacccttccttcactattaga |
278 |
Q |
| |
|
|||| ||||| ||||||||||||||||| |
|
|
| T |
15532073 |
gcagagagtacacttccttcactattaga |
15532101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 153 - 285
Target Start/End: Complemental strand, 2710960 - 2710828
Alignment:
| Q |
153 |
tcacatggataatcttcattggctttcttcactttcatccttgaaatatctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagca |
252 |
Q |
| |
|
|||||| ||||||||| ||||||||||| ||||||| || ||||||||||||| ||| || || |||||||||| ||| |||||||||||||||||| | |
|
|
| T |
2710960 |
tcacatagataatcttaattggctttctccactttcttctttgaaatatctcaacctcagcggtattgatcttcataaagaaaccaattggcttcaaata |
2710861 |
T |
|
| Q |
253 |
gtaagtacccttccttcactattagaattacaa |
285 |
Q |
| |
|
|| | ||| |||||||||||||||||| ||||| |
|
|
| T |
2710860 |
gtgaatacacttccttcactattagaagtacaa |
2710828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 161 - 284
Target Start/End: Original strand, 8459103 - 8459226
Alignment:
| Q |
161 |
ataatcttcattggctttcttcactttcatccttgaaatatctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaagtac |
260 |
Q |
| |
|
|||||||||| ||||||||| ||||||| ||||| ||| |||||| ||| | ||| |||||||||| ||||||||| ||||||||||||||||| ||| |
|
|
| T |
8459103 |
ataatcttcaatggctttctccactttcttccttaaaaaatctcaacctcaatggaattgatcttcataaggaaactaattggcttcaagcagtggctac |
8459202 |
T |
|
| Q |
261 |
ccttccttcactattagaattaca |
284 |
Q |
| |
|
||| |||| |||||||| ||||| |
|
|
| T |
8459203 |
actttcttccctattagagttaca |
8459226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 129
Target Start/End: Original strand, 8458958 - 8459080
Alignment:
| Q |
7 |
attctagaacttgagcttttgagttacttggatttgagctacaatgattttgacgttataagagttccagtcactcaacacaacatcacacgtttatcta |
106 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||| || | ||||| || |||||| ||||| | ||||||||||||||||| | ||||| |
|
|
| T |
8458958 |
attctagaacttgagtttctgagttacttggatttgagcttacataaatttgatgtgataagaattccatcgattcaacacaacatcacacatgcatcta |
8459057 |
T |
|
| Q |
107 |
aacttgtctaccttgacttatcc |
129 |
Q |
| |
|
| ||| | |||||||||||||| |
|
|
| T |
8459058 |
accttttgcaccttgacttatcc |
8459080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 299
Target Start/End: Complemental strand, 16436795 - 16436654
Alignment:
| Q |
158 |
tggataatcttcattggctttcttcactttcatccttgaaatatctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcagtaag |
257 |
Q |
| |
|
||||||||||| | ||| ||||| || |||| | ||| |||||||||| || ||||| ||||||||| | || | ||||||||||||||||||| | |
|
|
| T |
16436795 |
tggataatcttgactgggtttctacattttcttgcttaaaatatctcaatctcagtggtattgatcttagcaaagcaaccaattggcttcaagcaatggc |
16436696 |
T |
|
| Q |
258 |
tacccttccttcactattagaattacaactgagttactgtaa |
299 |
Q |
| |
|
|| |||||||| ||||||||||||||| ||| ||| ||||| |
|
|
| T |
16436695 |
taagcttccttccctattagaattacaattgaattattgtaa |
16436654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 299
Target Start/End: Original strand, 16436013 - 16436158
Alignment:
| Q |
154 |
cacatggataatcttcattggctttcttcactttcatccttgaaatatctcatccttagtgggattgatcttcgtaaggaaaccaattggcttcaagcag |
253 |
Q |
| |
|
||||||||||||||| | ||| ||||| || |||| | | |||||||| | ||| ||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
16436013 |
cacatggataatcttgactgggtttctccattttcttgttgaaaatatctaaacctcagtgggattgatcttaacaaggcaaccaattggcttcaagcaa |
16436112 |
T |
|
| Q |
254 |
taagtacccttccttcactattagaattacaactgagttactgtaa |
299 |
Q |
| |
|
| || |||||||| || |||||||||||| ||| ||| ||||| |
|
|
| T |
16436113 |
tggctaagcttccttccctgttagaattacaattgaattattgtaa |
16436158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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