View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18809_high_36 (Length: 316)
Name: NF18809_high_36
Description: NF18809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18809_high_36 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 23 - 294
Target Start/End: Complemental strand, 51008659 - 51008384
Alignment:
| Q |
23 |
tcagtagaatttattctttatattcatacaataagcttaaataacagcaatagttaactgaatcatcatcatcaaaatatttagatcatatgcatacata |
122 |
Q |
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| T |
51008659 |
tcagtagaatttattctttatattcatacaataagcttaaatgacagcaatagttaactgaatcatcatcatcaaaatatttagatcatatgcatacata |
51008560 |
T |
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| Q |
123 |
aaacagcttata----ccaaaaatattatctaagcaaatcaagtagaaacaaagttgcttataccaatgaatgtcttataagcatgatgcaactaattat |
218 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51008559 |
aaacagcttatatataccaaaaatattatctaagcaaatcaagtagaaacaaatttgcttataccaatgaatgtcttataagcatgatgcaactaattat |
51008460 |
T |
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| Q |
219 |
cacaagaatattatcttgtttatatgcatatatattggaggctgttactatggtaggtgaagtgtagagggtgaat |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51008459 |
cacaagaatattatcttgtttatatgcatatatattggaggctgttactatggtaggtgaagtgtagagggtgaat |
51008384 |
T |
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