View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18809_high_37 (Length: 314)
Name: NF18809_high_37
Description: NF18809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18809_high_37 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 9 - 204
Target Start/End: Original strand, 50458514 - 50458709
Alignment:
| Q |
9 |
tatagcattaacatggtatataagaaaggtaattttgttttaaaaaataggttaaattggatattatgtccctttcattattttattttggtctcataac |
108 |
Q |
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| T |
50458514 |
tatagcattaacatggtatataaaaaaggtaattttgtttaaaaaaataggttaaattggatattatgtccctttcattattttattttggtctcataac |
50458613 |
T |
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| Q |
109 |
ttctaaatcgttcattttaatctctcaaacattctcacatcgatcaatttggtctcaaacactattccaccatattgtgggagtatcgtcgtcgtt |
204 |
Q |
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| T |
50458614 |
ttctaaatcgttcattttaatctctcaaacattctctcatctatcaatttggtctcaaacactattccaccgtattgtgagagtatggtcgtcgtt |
50458709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 203 - 300
Target Start/End: Original strand, 50458771 - 50458868
Alignment:
| Q |
203 |
tttcttctctaataaatgtgtacatatatagtttgaaaaatatttctgaataaaaaaggacaacctacattatttccaaacttcattaatgatgaaag |
300 |
Q |
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| T |
50458771 |
tttcttctctaataaatgtgtacatatatagtttgaaaaatatttctgaataaaaaaggacaacctacattatttccaaacttcattaatgatgaaag |
50458868 |
T |
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