View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18809_high_39 (Length: 312)

Name: NF18809_high_39
Description: NF18809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18809_high_39
NF18809_high_39
[»] chr1 (4 HSPs)
chr1 (1-295)||(5397142-5397436)
chr1 (1-95)||(6139813-6139913)
chr1 (33-96)||(2595364-2595427)
chr1 (1-95)||(52022121-52022221)
[»] chr7 (4 HSPs)
chr7 (1-95)||(5448886-5448986)
chr7 (35-110)||(15589853-15589928)
chr7 (1-95)||(5439876-5439976)
chr7 (1-96)||(15588679-15588780)
[»] chr5 (6 HSPs)
chr5 (1-91)||(7400492-7400588)
chr5 (1-95)||(41341035-41341135)
chr5 (1-95)||(35429930-35430030)
chr5 (1-95)||(13661714-13661806)
chr5 (1-95)||(35428347-35428450)
chr5 (1-85)||(30921644-30921732)
[»] chr3 (6 HSPs)
chr3 (36-107)||(3371391-3371462)
chr3 (1-95)||(17731091-17731191)
chr3 (1-95)||(19032322-19032422)
chr3 (1-95)||(38183130-38183230)
chr3 (35-95)||(1026794-1026854)
chr3 (1-94)||(49582602-49582701)
[»] chr8 (2 HSPs)
chr8 (1-112)||(7278077-7278194)
chr8 (1-95)||(392333-392433)
[»] chr6 (5 HSPs)
chr6 (1-96)||(32342079-32342180)
chr6 (1-95)||(21118736-21118836)
chr6 (1-95)||(21118454-21118554)
chr6 (1-95)||(14766430-14766530)
chr6 (1-95)||(14763853-14763953)
[»] chr4 (5 HSPs)
chr4 (1-96)||(31322570-31322671)
chr4 (1-89)||(14508729-14508823)
chr4 (35-112)||(45676682-45676759)
chr4 (1-96)||(10550041-10550140)
chr4 (36-106)||(41848410-41848481)
[»] chr2 (3 HSPs)
chr2 (1-96)||(20594613-20594714)
chr2 (1-107)||(4660133-4660244)
chr2 (38-96)||(33301080-33301138)


Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 5397436 - 5397142
Alignment:
Q  1 ttaaactaagttagatataagcttaaagtgttacgtgcatctaaaaacaaagaacctaggtctaatatatagccttggtcttccccttgcttcaccgtac 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5397436 ttaaattaagttagatataagcttaaagtgttacgtgcatctaaaaacaaagaacctaggtctaatatatagccttggtcttccctttgcttcaccgtac 5397337  T
Q  101 taagcgacgtagtaaataagtctcatgatggggtgggaagagttattatttactgttctattttattagtgtttgctcttttgtaataatgttgtagttt 200  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5397336 taagcgacgtagtaaataagtctcatgatagggtgggaagagttattatttactgttctattttcttagtgtttgctcttttgtaataatgttgtagttt 5397237  T
Q  201 gttttatggaattttttaagggaatgacaccctatttgaaggcagcaaaaaccttcgcaatccactattttttgtaattaatttttattctaaaa 295  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5397236 gttttatggaattttttaagggaataacaccctatttgaaggcagcaaaaacctacgcaatccactattttttgtaattaatttttattctaaaa 5397142  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 6139913 - 6139813
Alignment:
Q  1 ttaaactaagttagatataagcttaaagtgttac------gtgcatctaaaaacaaagaacctaggtctaatatatagccttggtcttccccttgcttca 94  Q
    |||||||||||||||||||||||||||||||||       |||||||||||||||||||| ||| ||  |||||||||||||||||||||||||||||||    
T  6139913 ttaaactaagttagatataagcttaaagtgttattgaccggtgcatctaaaaacaaagaaactatgttcaatatatagccttggtcttccccttgcttca 6139814  T
Q  95 c 95  Q
    |    
T  6139813 c 6139813  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 96
Target Start/End: Original strand, 2595364 - 2595427
Alignment:
Q  33 acgtgcatctaaaaacaaagaacctaggtctaatatatagccttggtcttccccttgcttcacc 96  Q
    |||||||||||||||||||||||||| ||||||||||||| || |||||||||||| |||||||    
T  2595364 acgtgcatctaaaaacaaagaacctaagtctaatatatagtctaggtcttccccttacttcacc 2595427  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 52022221 - 52022121
Alignment:
Q  1 ttaaactaagttagatataagcttaaagtgttac------gtgcatctaaaaacaaagaacctaggtctaatatatagccttggtcttccccttgcttca 94  Q
    ||||||||||| |||||| ||||||||||| ||       |||||||||||||||||||| ||||||  ||||||||||||||||||||||||| |||||    
T  52022221 ttaaactaagtcagatatgagcttaaagtgctaatgactggtgcatctaaaaacaaagaaactaggttcaatatatagccttggtcttccccttacttca 52022122  T
Q  95 c 95  Q
    |    
T  52022121 c 52022121  T

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Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 5448886 - 5448986
Alignment:
Q  1 ttaaactaagttagatataagcttaaagtgttac------gtgcatctaaaaacaaagaacctaggtctaatatatagccttggtcttccccttgcttca 94  Q
    |||||||||||||||||||||||||||||| |||      |||||||||||||||||||| ||||||  |||||||||| ||||| ||||||||||||||    
T  5448886 ttaaactaagttagatataagcttaaagtgctactgactggtgcatctaaaaacaaagaaactaggttcaatatatagcattggtattccccttgcttca 5448985  T
Q  95 c 95  Q
    |    
T  5448986 c 5448986  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 110
Target Start/End: Original strand, 15589853 - 15589928
Alignment:
Q  35 gtgcatctaaaaacaaagaacctaggtctaatatatagccttggtcttccccttgcttcaccgtactaagcgacgt 110  Q
    ||||||||||| ||||||||||||| |  |||||||||||||||||||||||||||||||||  |||||| |||||    
T  15589853 gtgcatctaaatacaaagaacctagattcaatatatagccttggtcttccccttgcttcaccaaactaagtgacgt 15589928  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 5439876 - 5439976
Alignment:
Q  1 ttaaactaagttagatataagcttaaagtgttac------gtgcatctaaaaacaaagaacctaggtctaatatatagccttggtcttccccttgcttca 94  Q
    ||||||| |||||||||||||||||||||| |||      ||||||||||||||||| || ||||||  |||||||||| ||||| ||||||||||||||    
T  5439876 ttaaactgagttagatataagcttaaagtgctactgactggtgcatctaaaaacaaataaactaggttcaatatatagcattggtattccccttgcttca 5439975  T
Q  95 c 95  Q
    |    
T  5439976 c 5439976  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 15588679 - 15588780
Alignment:
Q  1 ttaaactaagttagatataagcttaaagtgttac------gtgcatctaaaaacaaagaacctaggtctaatatatagccttggtcttccccttgcttca 94  Q
    ||||||||||| | |||||||||||| ||| |||      ||||||||||||||||||||| ||     ||||||||||||||||||||| |||||||||    
T  15588679 ttaaactaagtcaaatataagcttaacgtgctactgacaggtgcatctaaaaacaaagaacgtaccatcaatatatagccttggtcttcctcttgcttca 15588778  T
Q  95 cc 96  Q
    ||    
T  15588779 cc 15588780  T

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Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 7400492 - 7400588
Alignment:
Q  1 ttaaactaagttagatataagcttaaagtgttac------gtgcatctaaaaacaaagaacctaggtctaatatatagccttggtcttccccttgct 91  Q
    ||||||||||| |||||||||||||||||| |||      |||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||    
T  7400492 ttaaactaagtcagatataagcttaaagtgctactgaccggtgcatctaaaaacaaagaacctaggttcaatatatagtcttggtcttccccttgct 7400588  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 41341135 - 41341035
Alignment:
Q  1 ttaaactaagttagatataagcttaaagtgttac------gtgcatctaaaaacaaagaacctaggtctaatatatagccttggtcttccccttgcttca 94  Q
    ||||||||||| |||||||||||||||||| |||      |||||||||||||||||||| |||||| ||||||||| | ||||||||||||||||||||    
T  41341135 ttaaactaagtcagatataagcttaaagtgctactgactggtgcatctaaaaacaaagaaactaggtttaatatataactttggtcttccccttgcttca 41341036  T
Q  95 c 95  Q
    |    
T  41341035 c 41341035  T

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Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 35429930 - 35430030
Alignment:
Q  1 ttaaactaagttagatataagcttaaagtgttac------gtgcatctaaaaacaaagaacctaggtctaatatatagccttggtcttccccttgcttca 94  Q
    ||||||||||| |||||||||||||||||| |||      |||| ||||||||||||||| ||||||  ||||||||| |||||||||||||||||||||    
T  35429930 ttaaactaagtcagatataagcttaaagtgctactgactggtgcttctaaaaacaaagaaactaggttcaatatatagtcttggtcttccccttgcttca 35430029  T
Q  95 c 95  Q
    |    
T  35430030 c 35430030  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 13661806 - 13661714
Alignment:
Q  1 ttaaactaagttagatataagcttaaagtgttacgtgcatctaaaaacaaagaacctaggtctaatatatagccttggtcttccccttgcttcac 95  Q
    ||||||||||| | ||||||||||||||||||  |||||||| | ||||||||||| | ||  |||||||| | |||||||||||||||||||||    
T  13661806 ttaaactaagtcaaatataagcttaaagtgtt--gtgcatctgataacaaagaaccaaagttcaatatataacattggtcttccccttgcttcac 13661714  T

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Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 35428347 - 35428450
Alignment:
Q  1 ttaaactaagttagatataagcttaaagtgttac------gtgcatctaaaaacaaagaac---ctaggtctaatatatagccttggtcttccccttgct 91  Q
    ||||||||||| |||||||||||||||||| |||      ||||||||||||||||||||    ||||||  |||||||||||||||||||||| |||||    
T  35428347 ttaaactaagtcagatataagcttaaagtgctactgactggtgcatctaaaaacaaagaaattactaggttcaatatatagccttggtcttcccattgct 35428446  T
Q  92 tcac 95  Q
    ||||    
T  35428447 tcac 35428450  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 30921644 - 30921732
Alignment:
Q  1 ttaaactaagttagatataagcttaaagtgtta---cgtgcatct-aaaaacaaagaacctaggtctaatatatagccttggtcttccc 85  Q
    ||||||||| ||||||||||| |||||||| ||    ||| |||| |||||||||||||||| ||| |||||||| | |||||||||||    
T  30921644 ttaaactaacttagatataagtttaaagtgctaatgtgtgtatctaaaaaacaaagaacctacgtccaatatataacattggtcttccc 30921732  T

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Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 36 - 107
Target Start/End: Complemental strand, 3371462 - 3371391
Alignment:
Q  36 tgcatctaaaaacaaagaacctaggtctaatatatagccttggtcttccccttgcttcaccgtactaagcga 107  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||  |||||||||    
T  3371462 tgcatctaaaaacaaggaacctaggtttaatatatagccttggtcttccctttgcttcaccaaactaagcga 3371391  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 17731091 - 17731191
Alignment:
Q  1 ttaaactaagttagatataagcttaaagtgttac------gtgcatctaaaaacaaagaacctaggtctaatatatagccttggtcttccccttgcttca 94  Q
    ||||||||||| |||||||||||||||||| |||      |||||||||| || |||||| ||||||  ||||||||||||||| |||||||||||||||    
T  17731091 ttaaactaagtcagatataagcttaaagtgctactgactggtgcatctaacaataaagaaactaggttcaatatatagccttggccttccccttgcttca 17731190  T
Q  95 c 95  Q
    |    
T  17731191 c 17731191  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 19032322 - 19032422
Alignment:
Q  1 ttaaactaagttagatataagcttaaagtgttac------gtgcatctaaaaacaaagaacctaggtctaatatatagccttggtcttccccttgcttca 94  Q
    ||||||||||| |||||||||||||||||| |||      |||||||||| || |||||| ||||||  ||||||||||||||| |||||||||||||||    
T  19032322 ttaaactaagtcagatataagcttaaagtgctactgactggtgcatctaacaataaagaaactaggttcaatatatagccttggccttccccttgcttca 19032421  T
Q  95 c 95  Q
    |    
T  19032422 c 19032422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 38183130 - 38183230
Alignment:
Q  1 ttaaactaagttagatataagcttaaagtgttac------gtgcatctaaaaacaaagaacctaggtctaatatatagccttggtcttccccttgcttca 94  Q
    |||| |||||| |||||||||||||||||| |||      |||||||||||||||||||| |||| |  |||||||||||||||||||| ||||||||||    
T  38183130 ttaacctaagtcagatataagcttaaagtgctactgactggtgcatctaaaaacaaagaaactagattcaatatatagccttggtcttcaccttgcttca 38183229  T
Q  95 c 95  Q
    |    
T  38183230 c 38183230  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 1026854 - 1026794
Alignment:
Q  35 gtgcatctaaaaacaaagaacctaggtctaatatatagccttggtcttccccttgcttcac 95  Q
    |||||||||||||||||||||||| ||   ||||||||||||||| |||||||||||||||    
T  1026854 gtgcatctaaaaacaaagaacctacgttcgatatatagccttggtattccccttgcttcac 1026794  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 49582701 - 49582602
Alignment:
Q  1 ttaaactaagttagatataagcttaaagtgttacg------tgcatctaaaaacaaagaacctaggtc-taatatatagccttggtcttccccttgcttc 93  Q
    ||||||||||||||||||||| |||||||| |||       |||||||||||||||||||| |||||| | |||| || | |||||||||||||||||||    
T  49582701 ttaaactaagttagatataag-ttaaagtgctactgactaatgcatctaaaaacaaagaacttaggtctttatatctaacattggtcttccccttgcttc 49582603  T

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Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 7278077 - 7278194
Alignment:
Q  1 ttaaactaagttagatataagcttaaagtgttac------gtgcatctaaaaacaaagaacctaggtctaatatatagccttggtcttccccttgcttca 94  Q
    ||||||||||| |||||||||||||||||| |||      ||||||||| |||||||||||||||||| ||||||||| | ||||| |||| ||||||||    
T  7278077 ttaaactaagtcagatataagcttaaagtgctactgactggtgcatctacaaacaaagaacctaggtccaatatatagtcatggtcctcccattgcttca 7278176  T
Q  95 ccgtactaagcgacgtag 112  Q
    ||  ||||||||| ||||    
T  7278177 ccacactaagcgatgtag 7278194  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 392333 - 392433
Alignment:
Q  1 ttaaactaagttagatataagcttaaagtgttacg------tgcatctaaaaacaaagaacctaggtctaatatatagccttggtcttccccttgcttca 94  Q
    ||||||||||| |||||||||||||||||| |||       || |||||||||||||||| ||| ||  |||||||||||||||||||||||||||||||    
T  392333 ttaaactaagtcagatataagcttaaagtgctactaactgatgtatctaaaaacaaagaaactacgttcaatatatagccttggtcttccccttgcttca 392432  T
Q  95 c 95  Q
    |    
T  392433 c 392433  T

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Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 32342180 - 32342079
Alignment:
Q  1 ttaaactaagttagatataagcttaaagtgttac------gtgcatctaaaaacaaagaacctaggtctaatatatagccttggtcttccccttgcttca 94  Q
    ||||||||||| ||||||||||||||||||||||      ||||||||||||||||||||| ||  |  |||||||||||||||||||||| ||||||||    
T  32342180 ttaaactaagtcagatataagcttaaagtgttactgaccggtgcatctaaaaacaaagaacttatattcaatatatagccttggtcttccctttgcttca 32342081  T
Q  95 cc 96  Q
    ||    
T  32342080 cc 32342079  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 21118736 - 21118836
Alignment:
Q  1 ttaaactaagttagatataagcttaaagtgttac------gtgcatctaaaaacaaagaacctaggtctaatatatagccttggtcttccccttgcttca 94  Q
    ||||||||||| |||||||||||||||||| |||      |||||||||||||||||||| ||||||  ||||||||||||||| ||||| |||||||||    
T  21118736 ttaaactaagtcagatataagcttaaagtgctactgactggtgcatctaaaaacaaagaaactaggttcaatatatagccttggccttcctcttgcttca 21118835  T
Q  95 c 95  Q
    |    
T  21118836 c 21118836  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 21118454 - 21118554
Alignment:
Q  1 ttaaactaagttagatataagcttaaagtgttac------gtgcatctaaaaacaaagaacctaggtctaatatatagccttggtcttccccttgcttca 94  Q
    ||||||||||| |||||||||||||||||| ||       |||||||||||||||||||| ||||||  ||||||||||||||| ||||| |||||||||    
T  21118454 ttaaactaagtcagatataagcttaaagtgctattgactggtgcatctaaaaacaaagaaactaggttcaatatatagccttggccttcctcttgcttca 21118553  T
Q  95 c 95  Q
    |    
T  21118554 c 21118554  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 14766430 - 14766530
Alignment:
Q  1 ttaaactaagttagatataagcttaaagtgttac------gtgcatctaaaaacaaagaacctaggtctaatatatagccttggtcttccccttgcttca 94  Q
    ||||||||||| ||||| |||||||||||| ||       ||||||||||||||||| || ||||||  |||||||||||||||||||| ||||||||||    
T  14766430 ttaaactaagtcagatacaagcttaaagtgctattgactagtgcatctaaaaacaaaaaaactaggttcaatatatagccttggtcttctccttgcttca 14766529  T
Q  95 c 95  Q
    |    
T  14766530 c 14766530  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 14763853 - 14763953
Alignment:
Q  1 ttaaactaagttagatataagcttaaagtgttac------gtgcatctaaaaacaaagaacctaggtctaatatatagccttggtcttccccttgcttca 94  Q
    ||||||||||| ||||| |||||||||||| |||      || ||||||||||||||||| |||| |  |||| ||||| ||||||||||||||||||||    
T  14763853 ttaaactaagtcagatacaagcttaaagtgctactgactggtacatctaaaaacaaagaaactagattcaataaatagctttggtcttccccttgcttca 14763952  T
Q  95 c 95  Q
    |    
T  14763953 c 14763953  T

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Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 31322671 - 31322570
Alignment:
Q  1 ttaaactaagttagatataagcttaaagtgttac------gtgcatctaaaaacaaagaacctaggtctaatatatagccttggtcttccccttgcttca 94  Q
    ||||||||||| ||||||||||||||||||  |       |||||||||||||||||||||||||||| |||||||| |||||||||||| ||| |||||    
T  31322671 ttaaactaagtcagatataagcttaaagtgccattgaatggtgcatctaaaaacaaagaacctaggtccaatatataaccttggtcttcctcttacttca 31322572  T
Q  95 cc 96  Q
    ||    
T  31322571 cc 31322570  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 14508823 - 14508729
Alignment:
Q  1 ttaaactaagttagatataagcttaaagtgttac------gtgcatctaaaaacaaagaacctaggtctaatatatagccttggtcttccccttg 89  Q
    |||||||| || |||||||||||||||||| |||      || ||||||||||| ||||||||||||  ||||||||||||||||||||||||||    
T  14508823 ttaaactaggtcagatataagcttaaagtgctactgactggtacatctaaaaactaagaacctaggttcaatatatagccttggtcttccccttg 14508729  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 112
Target Start/End: Original strand, 45676682 - 45676759
Alignment:
Q  35 gtgcatctaaaaacaaagaacctaggtctaatatatagccttggtcttccccttgcttcaccgtactaagcgacgtag 112  Q
    |||||||||||||||||||||||||||  ||||||||| ||| | ||| ||||||||||||   ||||||||| ||||    
T  45676682 gtgcatctaaaaacaaagaacctaggttcaatatatagtcttagcctttcccttgcttcactaaactaagcgatgtag 45676759  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 10550041 - 10550140
Alignment:
Q  1 ttaaactaagttagatataagcttaaagtgttac------gtgcatctaaaaacaaagaacctaggtctaatatatagccttggtcttccccttgcttca 94  Q
    ||||||| ||| |||||||| ||||||||| |||      |||||||||||||||||||||||||||  |  |||||||||| || ||||||||||||||    
T  10550041 ttaaactgagtcagatataaacttaaagtgctactgactggtgcatctaaaaacaaagaacctaggttca--atatagccttagttttccccttgcttca 10550138  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 106
Target Start/End: Original strand, 41848410 - 41848481
Alignment:
Q  36 tgcatctaaaaacaaagaacctaggtctaatatatagccttgg-tcttccccttgcttcaccgtactaagcg 106  Q
    ||||||||||||||||||||| | ||| |||||||||| |||| | ||||||||||||||||  ||||||||    
T  41848410 tgcatctaaaaacaaagaaccaaagtcgaatatatagcattggtttttccccttgcttcaccacactaagcg 41848481  T

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Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 20594714 - 20594613
Alignment:
Q  1 ttaaactaagttagatataagcttaaagtgttac------gtgcatctaaaaacaaagaacctaggtctaatatatagccttggtcttccccttgcttca 94  Q
    |||||||| || ||||||||||||| |||||||       ||||||||||||| |||||||||||||  ||||||||| |||||||||||||||||||||    
T  20594714 ttaaactatgtcagatataagcttagagtgttattgaccggtgcatctaaaaataaagaacctaggttcaatatatagtcttggtcttccccttgcttca 20594615  T
Q  95 cc 96  Q
    ||    
T  20594614 cc 20594613  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 4660133 - 4660244
Alignment:
Q  1 ttaaactaagttagatataagcttaaagtgttac------gtgcatctaaaaacaaagaacctaggtctaatatatagccttggtcttccccttgcttca 94  Q
    ||||||||||| |||||||| ||||||||| |||      ||||||| |||||||||||| ||||||  |||||||||| ||||||||||||||||||||    
T  4660133 ttaaactaagtcagatataatcttaaagtgctactgaccggtgcatc-aaaaacaaagaaactaggttcaatatatagcattggtcttccccttgcttca 4660231  T
Q  95 ccgtactaagcga 107  Q
    ||  |||||||||    
T  4660232 ccaaactaagcga 4660244  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 96
Target Start/End: Original strand, 33301080 - 33301138
Alignment:
Q  38 catctaaaaacaaagaacctaggtctaatatatagccttggtcttccccttgcttcacc 96  Q
    |||||||||||||||||| |  ||  ||||||||||||||||||||||||| |||||||    
T  33301080 catctaaaaacaaagaacatgagttcaatatatagccttggtcttccccttacttcacc 33301138  T

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