View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18809_high_45 (Length: 275)

Name: NF18809_high_45
Description: NF18809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18809_high_45
NF18809_high_45
[»] chr2 (10 HSPs)
chr2 (1-260)||(8368247-8368506)
chr2 (1-260)||(8400904-8401163)
chr2 (1-260)||(8422481-8422740)
chr2 (1-111)||(8431135-8431245)
chr2 (2-111)||(8411997-8412106)
chr2 (2-111)||(8417215-8417324)
chr2 (2-111)||(8434095-8434204)
chr2 (1-87)||(8375924-8376010)
chr2 (1-87)||(8439093-8439179)
chr2 (68-104)||(8403987-8404023)
[»] chr4 (1 HSPs)
chr4 (2-111)||(55336242-55336351)


Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 8368247 - 8368506
Alignment:
Q  1 agctgcaattccagtgagtaatggtcctgcaatagccaatgtcttatttatcttcaataccaagtttcctaatctctcataatcttccatatcttttctc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8368247 agctgcaattccagtgagtaatggtcctgcaatagccaatgtcttatttatcttcaacaccaagtttcctaatctctcataatcttccatatcttttctc 8368346  T
Q  101 ttcataacttctaatacatcttttacttcactttctaatccttcattccatccatttttctttgtttcattattttctgaatgaaaactattgttgcttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8368347 ttcataacttctaatacatcttttacttcactttctaatccttcattccatccatttttctttgtttcattattttctgaatgaaaactattgttgcttc 8368446  T
Q  201 ttctagatgannnnnnngtaggcctccaatttgcaggttcatatttttgagggaattttt 260  Q
    ||||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  8368447 ttctagatgatttttttgtaggcctccaatttgcaggttcatatttttgagggaattttt 8368506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 8401163 - 8400904
Alignment:
Q  1 agctgcaattccagtgagtaatggtcctgcaatagccaatgtcttatttatcttcaataccaagtttcctaatctctcataatcttccatatcttttctc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8401163 agctgcaattccagtgagtaatggtcctgcaatagccaatgtcttatttatcttcaacaccaagtttcctaatctctcataatcttccatatcttttctc 8401064  T
Q  101 ttcataacttctaatacatcttttacttcactttctaatccttcattccatccatttttctttgtttcattattttctgaatgaaaactattgttgcttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8401063 ttcataacttctaatacatcttttacttcactttctaatccttcattccatccatttttctttgtttcattattttctgaatgaaaactattgttgcttc 8400964  T
Q  201 ttctagatgannnnnnngtaggcctccaatttgcaggttcatatttttgagggaattttt 260  Q
    ||||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  8400963 ttctagatgatttttttgtaggcctccaatttgcaggttcatatttttgagggaattttt 8400904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 8422740 - 8422481
Alignment:
Q  1 agctgcaattccagtgagtaatggtcctgcaatagccaatgtcttatttatcttcaataccaagtttcctaatctctcataatcttccatatcttttctc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8422740 agctgcaattccagtgagtaatggtcctgcaatagccaatgtcttatttatcttcaacaccaagtttcctaatctctcataatcttccatatcttttctc 8422641  T
Q  101 ttcataacttctaatacatcttttacttcactttctaatccttcattccatccatttttctttgtttcattattttctgaatgaaaactattgttgcttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8422640 ttcataacttctaatacatcttttacttcactttctaatccttcattccatccatttttctttgtttcattattttctgaatgaaaactattgttgcttc 8422541  T
Q  201 ttctagatgannnnnnngtaggcctccaatttgcaggttcatatttttgagggaattttt 260  Q
    ||||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  8422540 ttctagatgatttttttgtaggcctccaatttgcaggttcatatttttgagggaattttt 8422481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 8431135 - 8431245
Alignment:
Q  1 agctgcaattccagtgagtaatggtcctgcaatagccaatgtcttatttatcttcaataccaagtttcctaatctctcataatcttccatatcttttctc 100  Q
    |||||||||||| | ||||||||| |||||||| |||||  |||| |||| ||||||| | | |||||| | ||| ||||||||||| |  |||||||||    
T  8431135 agctgcaattcctgagagtaatggccctgcaattgccaaactcttgtttaccttcaatgctatgtttccaagtctatcataatcttcaacgtcttttctc 8431234  T
Q  101 ttcataacttc 111  Q
    || || |||||    
T  8431235 tttatcacttc 8431245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 111
Target Start/End: Original strand, 8411997 - 8412106
Alignment:
Q  2 gctgcaattccagtgagtaatggtcctgcaatagccaatgtcttatttatcttcaataccaagtttcctaatctctcataatcttccatatcttttctct 101  Q
    ||||||||||| ||||||||||| |||||||| |||||  |||| |||| ||||||  | | |||||| | ||| |||||||||||   |||||||||||    
T  8411997 gctgcaattcctgtgagtaatggccctgcaattgccaaactcttgtttaccttcaacgctatgtttccaagtctgtcataatcttcagaatcttttctct 8412096  T
Q  102 tcataacttc 111  Q
    | || |||||    
T  8412097 tgatcacttc 8412106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 111
Target Start/End: Original strand, 8417215 - 8417324
Alignment:
Q  2 gctgcaattccagtgagtaatggtcctgcaatagccaatgtcttatttatcttcaataccaagtttcctaatctctcataatcttccatatcttttctct 101  Q
    ||||||||||| ||||||||||| |||||||| |||||  |||| |||| ||||||  | | |||||| | ||| |||||||||||   |||||||||||    
T  8417215 gctgcaattcctgtgagtaatggccctgcaattgccaaactcttgtttaccttcaacgctatgtttccaagtctgtcataatcttcagaatcttttctct 8417314  T
Q  102 tcataacttc 111  Q
    | || |||||    
T  8417315 tgatcacttc 8417324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 111
Target Start/End: Original strand, 8434095 - 8434204
Alignment:
Q  2 gctgcaattccagtgagtaatggtcctgcaatagccaatgtcttatttatcttcaataccaagtttcctaatctctcataatcttccatatcttttctct 101  Q
    ||||||||||| ||||||||||| |||||||| |||||  |||| |||| ||||||  | | |||||| | ||| |||||||||||   |||||||||||    
T  8434095 gctgcaattcctgtgagtaatggccctgcaattgccaaactcttgtttaccttcaacgctatgtttccaagtctgtcataatcttcagaatcttttctct 8434194  T
Q  102 tcataacttc 111  Q
    | || |||||    
T  8434195 tgatcacttc 8434204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 8376010 - 8375924
Alignment:
Q  1 agctgcaattccagtgagtaatggtcctgcaatagccaatgtcttatttatcttcaataccaagtttcctaatctctcataatcttc 87  Q
    |||||||||||| ||||| ||||| |||||||| |||||  |||| |||| ||||||| | | |||||| | ||| |||||||||||    
T  8376010 agctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttaccttcaatgctatgtttccaagtctgtcataatcttc 8375924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 8439093 - 8439179
Alignment:
Q  1 agctgcaattccagtgagtaatggtcctgcaatagccaatgtcttatttatcttcaataccaagtttcctaatctctcataatcttc 87  Q
    |||||||||||| ||||| ||||| |||||||| |||||  |||| |||| ||||||| | | |||||| | ||| |||||||||||    
T  8439093 agctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttaccttcaatgctatgtttccaagtctgtcataatcttc 8439179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 8403987 - 8404023
Alignment:
Q  68 cctaatctctcataatcttccatatcttttctcttca 104  Q
    ||||||||||||||||| || ||||||||||||||||    
T  8403987 cctaatctctcataatcctcaatatcttttctcttca 8404023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 111
Target Start/End: Original strand, 55336242 - 55336351
Alignment:
Q  2 gctgcaattccagtgagtaatggtcctgcaatagccaatgtcttatttatcttcaataccaagtttcctaatctctcataatcttccatatcttttctct 101  Q
    ||||||||||||||||||||||| ||||| || ||||   |||| || ||||||||| | |  ||||| | ||||||||| ||||| || ||||| ||||    
T  55336242 gctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcatagtcttcaatgtctttactct 55336341  T
Q  102 tcataacttc 111  Q
    | | ||||||    
T  55336342 ttacaacttc 55336351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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