View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18809_high_54 (Length: 241)
Name: NF18809_high_54
Description: NF18809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18809_high_54 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 2529262 - 2529463
Alignment:
| Q |
17 |
catcatcacctttaacaagctcaacggaacttttcgagttacaaggagaaacaaaacccggttcacaactaggactggagctaagaacagaagggcaact |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2529262 |
catcatcacctttaacaagctcaacggaacttttcgagttacaaggcgaaacaaaacccggttcacagctaggactggagctaagaacagaagggcaact |
2529361 |
T |
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| Q |
117 |
gcattttttgtcaccaatgcatatgttataaggtccacaaggttgtggtgtactacaagaatcttgaggtattcttgttgtcgatgaaccacttgagcct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2529362 |
gcattttttgtcaccaatgcatatgttataaggtccacaaggttgtggtgtactacaagaatcttgaggtattcttgttgtcgatgaaccacttgagcct |
2529461 |
T |
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| Q |
217 |
tt |
218 |
Q |
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|| |
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| T |
2529462 |
tt |
2529463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 31027961 - 31027917
Alignment:
| Q |
152 |
cacaaggttgtggtgtactacaagaatcttgaggtattcttgttg |
196 |
Q |
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||||||||| |||||||| |||| ||||||| ||||||||||||| |
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| T |
31027961 |
cacaaggttctggtgtaccacaataatcttgtggtattcttgttg |
31027917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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